View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2664_high_12 (Length: 280)

Name: NF2664_high_12
Description: NF2664
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2664_high_12
NF2664_high_12
[»] chr7 (2 HSPs)
chr7 (1-267)||(3076862-3077128)
chr7 (49-172)||(19804286-19804411)
[»] chr8 (2 HSPs)
chr8 (48-172)||(5559644-5559768)
chr8 (64-161)||(34149682-34149779)
[»] chr1 (1 HSPs)
chr1 (48-170)||(22212383-22212508)
[»] chr2 (1 HSPs)
chr2 (48-161)||(2694204-2694317)
[»] chr6 (2 HSPs)
chr6 (65-161)||(5248150-5248246)
chr6 (108-172)||(28146770-28146834)
[»] chr3 (2 HSPs)
chr3 (49-172)||(19357427-19357550)
chr3 (49-147)||(14529020-14529122)
[»] chr5 (2 HSPs)
chr5 (49-172)||(41530279-41530402)
chr5 (62-172)||(37366666-37366776)
[»] scaffold0158 (1 HSPs)
scaffold0158 (49-165)||(12287-12405)
[»] chr4 (3 HSPs)
chr4 (49-165)||(1507904-1508020)
chr4 (48-172)||(5573506-5573631)
chr4 (51-165)||(4222379-4222492)


Alignment Details
Target: chr7 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 267
Target Start/End: Original strand, 3076862 - 3077128
Alignment:
Q  1 aggttgtatatctagaacttgaagtaatcagctagtttgcactcctcttgtaataccccatatgtaaaaattcaatataagttattctatccttgtaatt 100  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| |||||||||||| ||  ||||    
T  3076862 aggttgtatatctagaacttgaagtaatcagctagttttcactcctcttgtaattccccatatgtaaaaattcaatatcagttattctatctttaaaatt 3076961  T
Q  101 ttcaagagaagggcaaaatgataattgtgcataaaacttttcaggaccaaatcacattatttcaatggactacgaaaaatgtacttttgttcagcttaaa 200  Q
    |||||||||||||||||||| ||||||||||||| |||||||| || |||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  3076962 ttcaagagaagggcaaaatggtaattgtgcataagacttttcaagatcaaatcacattatttcaatggactacgaaaaatgtacttttgttcagcataaa 3077061  T
Q  201 actttcatggcaattttatcggatgctttgtttcgaagaagtgtaaaaaggacaaaatggtcatttt 267  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3077062 actttcatggcaattttatcggatgctttgtttcgaagaagtgtaaaaaggacaaaatggtcatttt 3077128  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 49 - 172
Target Start/End: Complemental strand, 19804411 - 19804286
Alignment:
Q  49 tgtaataccccatatgtaaaaattcaatataagttattctatccttgtaattttca--agagaagggcaaaatgataattgtgcataaaacttttcagga 146  Q
    |||||||||||  ||||||||||||| ||| ||||||| |||| ||| ||||||    || ||  | ||||||| ||||||||||||| |||||||||||    
T  19804411 tgtaataccccgcatgtaaaaattcagtatcagttattttatctttggaattttttttagggacagacaaaatggtaattgtgcataagacttttcagga 19804312  T
Q  147 ccaaatcacattatttcaatggacta 172  Q
    |  || || |||||||||| ||||||    
T  19804311 ctgaaacatattatttcaacggacta 19804286  T

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Target: chr8 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 48 - 172
Target Start/End: Complemental strand, 5559768 - 5559644
Alignment:
Q  48 ttgtaataccccatatgtaaaaattcaatataagttattctatccttgtaattttcaagagaagggcaaaatgataattgtgcataaaacttttcaggac 147  Q
    |||||||| |||  ||||||||||||| ||| ||||||| |||| ||| ||  || ||||||||| ||||||| ||| ||| || |||||||||||||||    
T  5559768 ttgtaataacccgcatgtaaaaattcagtatcagttattttatcattggaaaatttaagagaaggacaaaatggtaactgttcacaaaacttttcaggac 5559669  T
Q  148 caaatcacattatttcaatggacta 172  Q
    | ||||| |||||||||| ||||||    
T  5559668 cgaatcatattatttcaacggacta 5559644  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 64 - 161
Target Start/End: Original strand, 34149682 - 34149779
Alignment:
Q  64 gtaaaaattcaatataagttattctatccttgtaattttcaagagaagggcaaaatgataattgtgcataaaacttttcaggaccaaatcacattatt 161  Q
    |||||||||||| || |||||||||||| ||| |||||| | |||||  | | |||| ||||||||||||| | ||||||||| | ||||| ||||||    
T  34149682 gtaaaaattcaacattagttattctatctttggaatttttatgagaaatgtacaatggtaattgtgcataagaattttcaggatcgaatcatattatt 34149779  T

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Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 48 - 170
Target Start/End: Complemental strand, 22212508 - 22212383
Alignment:
Q  48 ttgtaataccccatatgtaaaaattcaatataagttattctatccttgtaattttc---aagagaagggcaaaatgataattgtgcataaaacttttcag 144  Q
    ||||||||||||| ||||||||||| | |||||||| || |||| ||| ||||||    |||||||||| ||||||| |||||||||||| |||||||||    
T  22212508 ttgtaataccccacatgtaaaaatttagtataagttcttttatctttggaattttttttaagagaagggtaaaatgaaaattgtgcataagacttttcag 22212409  T
Q  145 gaccaaatcacattatttcaatggac 170  Q
    |||| || || |||||| ||| ||||    
T  22212408 gaccgaaacatattattccaacggac 22212383  T

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Target: chr2 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 48 - 161
Target Start/End: Original strand, 2694204 - 2694317
Alignment:
Q  48 ttgtaataccccatatgtaaaaattcaatataagttattctatccttgtaattttcaagagaagggcaaaatgataattgtgcataaaacttttcaggac 147  Q
    ||||||||||||  |||||||||||||  || ||||||| |||| ||| ||  || ||||||||| ||||||| ||||||| || |||||||||||||||    
T  2694204 ttgtaataccccgcatgtaaaaattcagcatcagttattttatcattggaaaatttaagagaaggacaaaatggtaattgttcacaaaacttttcaggac 2694303  T
Q  148 caaatcacattatt 161  Q
    | ||||| ||||||    
T  2694304 cgaatcatattatt 2694317  T

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Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 65 - 161
Target Start/End: Original strand, 5248150 - 5248246
Alignment:
Q  65 taaaaattcaatataagttattctatccttgtaattttcaagagaagggcaaaatgataattgtgcataaaacttttcaggaccaaatcacattatt 161  Q
    |||||||||| ||| |||||||| ||| ||| |||||| |||| ||||||| |||| ||||||||||||| ||| | ||||||||||||| ||||||    
T  5248150 taaaaattcagtatcagttattcaatcattggaatttttaagaaaagggcataatggtaattgtgcataagactgtgcaggaccaaatcatattatt 5248246  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 108 - 172
Target Start/End: Complemental strand, 28146834 - 28146770
Alignment:
Q  108 gaagggcaaaatgataattgtgcataaaacttttcaggaccaaatcacattatttcaatggacta 172  Q
    ||||| ||||||| ||||||||||||| ||||||||||||  || || |||||||||| ||||||    
T  28146834 gaaggacaaaatggtaattgtgcataagacttttcaggactgaaacatattatttcaacggacta 28146770  T

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Target: chr3 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 49 - 172
Target Start/End: Original strand, 19357427 - 19357550
Alignment:
Q  49 tgtaataccccatatgtaaaaattcaatataagttattctatccttgtaattttcaagagaagggcaaaatgataattgtgcataaaacttttcaggacc 148  Q
    ||||||| |||  ||||||||||||| ||| ||||||| |||| ||| ||  || ||||||||| ||||||| ||| ||| || ||||||||||||||||    
T  19357427 tgtaataacccgcatgtaaaaattcagtatcagttattttatcattggaaaatttaagagaaggacaaaatggtaactgttcacaaaacttttcaggacc 19357526  T
Q  149 aaatcacattatttcaatggacta 172  Q
     ||||| |||||| ||| ||||||    
T  19357527 gaatcatattattccaacggacta 19357550  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 49 - 147
Target Start/End: Original strand, 14529020 - 14529122
Alignment:
Q  49 tgtaataccccatatgtaaaaa-ttcaatataagttattctatccttgtaattttca---agagaagggcaaaatgataattgtgcataaaacttttcag 144  Q
    |||||||||||  ||||||||| |||||||| ||||||| |||| ||| ||||||     || ||||| ||||||| ||||||||||||| |||||||||    
T  14529020 tgtaataccccgcatgtaaaaaattcaatatcagttattttatctttggaatttttttttagggaaggacaaaatggtaattgtgcataagacttttcag 14529119  T
Q  145 gac 147  Q
    |||    
T  14529120 gac 14529122  T

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Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 49 - 172
Target Start/End: Complemental strand, 41530402 - 41530279
Alignment:
Q  49 tgtaataccccatatgtaaaaattcaatataagttattctatccttgtaattttcaagagaagggcaaaatgataattgtgcataaaacttttcaggacc 148  Q
    ||||||| |||  ||||||||||||| ||| | ||||| |||| ||| ||  || ||||||||| ||||||| ||| ||| || ||||||||||||||||    
T  41530402 tgtaataacccgcatgtaaaaattcagtatcaattattttatcattggaaaatttaagagaaggacaaaatggtaactgttcacaaaacttttcaggacc 41530303  T
Q  149 aaatcacattatttcaatggacta 172  Q
     ||||| |||||| ||| ||||||    
T  41530302 gaatcatattattccaacggacta 41530279  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 62 - 172
Target Start/End: Original strand, 37366666 - 37366776
Alignment:
Q  62 atgtaaaaattcaatataagttattctatccttgtaattttcaagagaagggcaaaatgataattgtgcataaaacttttcaggaccaaatcacattatt 161  Q
    |||||| |||||| ||| ||||||| |||| ||| ||  || ||||||| | ||||||| ||||||| || |||||||||||||| | ||||| ||||||    
T  37366666 atgtaagaattcagtatcagttattttatcattggaaaatttaagagaaagacaaaatggtaattgttcacaaaacttttcaggatcgaatcatattatt 37366765  T
Q  162 tcaatggacta 172  Q
     ||| ||||||    
T  37366766 ccaacggacta 37366776  T

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Target: scaffold0158 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0158
Description:

Target: scaffold0158; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 49 - 165
Target Start/End: Original strand, 12287 - 12405
Alignment:
Q  49 tgtaataccccatatgtaaaaattcaatataagttattctatccttgtaa--ttttcaagagaagggcaaaatgataattgtgcataaaacttttcagga 146  Q
    ||||||||||| |||||||||||||| ||| ||||||| |||| ||| ||  ||||   | || || ||||||| ||||||||||||| |||||||||||    
T  12287 tgtaataccccgtatgtaaaaattcagtatcagttattttatctttggaatttttttttgggacggacaaaatggtaattgtgcataagacttttcagga 12386  T
Q  147 ccaaatcacattatttcaa 165  Q
    |  || || ||||||||||    
T  12387 ctgaaacatattatttcaa 12405  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 49 - 165
Target Start/End: Complemental strand, 1508020 - 1507904
Alignment:
Q  49 tgtaataccccatatgtaaaaattcaatataagttattctatccttgtaattttca-agagaagggcaaaatgataattgtgcataaaacttttcaggac 147  Q
    |||||||||||  ||||||||||||| ||||||||||| |||| ||| ||||||   || ||||| |||| || ||||||||||||| ||||||| ||||    
T  1508020 tgtaataccccgcatgtaaaaattcagtataagttattttatctttggaatttttttagggaaggacaaa-tggtaattgtgcataagacttttcgggac 1507922  T
Q  148 caaatcacattatttcaa 165  Q
      || || ||||||||||    
T  1507921 tgaaacatattatttcaa 1507904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 48 - 172
Target Start/End: Original strand, 5573506 - 5573631
Alignment:
Q  48 ttgtaataccccatatgtaaaaattcaatataagttattctatccttgtaattttca-agagaagggcaaaatgataattgtgcataaaacttttcagga 146  Q
    ||||||||||||  |||||||| |||||||| ||||||| |||| ||  ||||||   || ||||| ||||||| |||||||||| || |||||||||||    
T  5573506 ttgtaataccccgcatgtaaaagttcaatatcagttattttatcttttgaatttttttagggaaggacaaaatggtaattgtgcacaagacttttcagga 5573605  T
Q  147 ccaaatcacattatttcaatggacta 172  Q
       || || |||||||||| ||||||    
T  5573606 ttgaaacatattatttcaacggacta 5573631  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 51 - 165
Target Start/End: Complemental strand, 4222492 - 4222379
Alignment:
Q  51 taataccccatatgtaaaaattcaatataagttattctatccttgtaattttcaagagaagggcaaaatgataattgtgcataaaacttttcaggaccaa 150  Q
    |||||||||  ||||||||||| | ||||||||||| |||| ||| ||||||  || ||||| | ||||| |||||||| |||| ||||||| ||||  |    
T  4222492 taataccccgcatgtaaaaatttagtataagttattttatctttggaattttttagggaaggac-aaatggtaattgtgaataagacttttcgggactga 4222394  T
Q  151 atcacattatttcaa 165  Q
    | || ||||||||||    
T  4222393 aacatattatttcaa 4222379  T

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