View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2664_high_2 (Length: 664)

Name: NF2664_high_2
Description: NF2664
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2664_high_2
NF2664_high_2
[»] chr2 (1 HSPs)
chr2 (10-644)||(5553733-5554376)


Alignment Details
Target: chr2 (Bit Score: 519; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 519; E-Value: 0
Query Start/End: Original strand, 10 - 644
Target Start/End: Complemental strand, 5554376 - 5553733
Alignment:
Q  10 ataatacttggtgaataaaattaagttctccttttaaaaatggtttctggataagccttcaaatcactctaataccccttatttgagtgggatgtggaat 109  Q
    |||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5554376 ataatatttggtgaataaaattaagttctccttttaaagatggtttctggataagccttcaaatcactctaataccccttatttgagtgggatgtggaat 5554277  T
Q  110 gtgtcttattatgtttatgtcgatatttatttgtggtgttggttaccactgttttgtctgtggttgtttattagtttacagtcagattatcattaattaa 209  Q
    ||||||||    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5554276 gtgtcttag---gtttatgtcgatatttatttgtggtgttggttaccactgttttgtctgtggttgtttattagtttacagtcagattatcattaattaa 5554180  T
Q  210 aacatgtttttgcacgttttggcttattatttgataaataaaattcatgaattaaacgtgagaaaccagaataggaaaagtaaacaaatattgacaaaca 309  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  5554179 aacatgtttttgcacattttggcttattatttgataaataaaattcatgaattaaacgtgagagaccagaataggaaaagtaaacaaatattgacaaaca 5554080  T
Q  310 tttcaatgtgtcttttccataatcttaggacacatatcagaaagcatttcat---aatagttacaggaaaatgtcttaaaatgtctacaaagccactaaa 406  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||    
T  5554079 tttcaatgtgtcttttccataatcttaggacacatatcagaaagcatttcataataatagttacaggaaaatgtcttaaaatgtctacaaagccactaaa 5553980  T
Q  407 tagtactcattagggcatacttacaaaccctgctcaatttttct--------nnnnnnnnnnnnntactcttagcactcatctgctatcatcataatcat 498  Q
    ||||||||||||||||||||||||||||||||||||||||||||                     |||||||||||||||||||||||||||||||||||    
T  5553979 tagtactcattagggcatacttacaaaccctgctcaatttttcttatatatatatatatatatattactcttagcactcatctgctatcatcataatcat 5553880  T
Q  499 cattatcataaccatatactaggaagcaaattacaggtctttcatacttctctcaagcacaaatatatcaactgcacaag-aaaaaattaaaacctagtt 597  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  5553879 cattatcataaccatatactaggaagcaaattacaggtctttcatacttctctcaagcacaaatatatcaactgcacaagaaaaaaattaaaacctagtt 5553780  T
Q  598 agtaggaagaagtagaatataaatatataaacatgttaatagtctaa 644  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||    
T  5553779 agtaggaagaagtagaatataaatatataatcatgttaatagtctaa 5553733  T

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