View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2664_low_1 (Length: 815)

Name: NF2664_low_1
Description: NF2664
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2664_low_1
NF2664_low_1
[»] chr4 (10 HSPs)
chr4 (18-744)||(20426318-20427044)
chr4 (18-408)||(20455406-20455796)
chr4 (154-439)||(20452920-20453207)
chr4 (310-379)||(48741994-48742063)
chr4 (318-426)||(9569198-9569306)
chr4 (18-69)||(4877557-4877608)
chr4 (318-391)||(54295079-54295152)
chr4 (323-424)||(9581948-9582049)
chr4 (323-424)||(9587643-9587744)
chr4 (318-379)||(37897951-37898012)
[»] chr8 (5 HSPs)
chr8 (36-625)||(15337909-15338504)
chr8 (36-625)||(15426974-15427569)
chr8 (36-625)||(15518278-15518873)
chr8 (323-391)||(12652271-12652339)
chr8 (324-391)||(26607069-26607136)
[»] chr1 (4 HSPs)
chr1 (147-506)||(51869830-51870192)
chr1 (315-394)||(368798-368877)
chr1 (318-394)||(361883-361959)
chr1 (160-190)||(22535391-22535421)
[»] chr2 (7 HSPs)
chr2 (147-420)||(44937765-44938041)
chr2 (283-439)||(44918435-44918594)
chr2 (527-643)||(44912263-44912379)
chr2 (324-392)||(44912517-44912585)
chr2 (322-376)||(44141455-44141509)
chr2 (529-589)||(44918282-44918342)
chr2 (33-71)||(44912810-44912848)
[»] scaffold0054 (2 HSPs)
scaffold0054 (318-426)||(39782-39890)
scaffold0054 (318-379)||(33478-33539)
[»] chr6 (7 HSPs)
chr6 (315-395)||(32740709-32740789)
chr6 (315-426)||(29131311-29131422)
chr6 (318-430)||(32960693-32960805)
chr6 (318-391)||(29012838-29012911)
chr6 (321-389)||(34258255-34258323)
chr6 (318-392)||(29145302-29145376)
chr6 (318-379)||(29300084-29300145)
[»] chr5 (3 HSPs)
chr5 (315-379)||(42637359-42637423)
chr5 (279-391)||(30651529-30651641)
chr5 (325-387)||(40549282-40549344)
[»] chr7 (1 HSPs)
chr7 (279-379)||(25628154-25628254)
[»] scaffold0129 (1 HSPs)
scaffold0129 (318-391)||(17152-17225)
[»] chr3 (1 HSPs)
chr3 (318-379)||(44550492-44550553)


Alignment Details
Target: chr4 (Bit Score: 671; Significance: 0; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 671; E-Value: 0
Query Start/End: Original strand, 18 - 744
Target Start/End: Original strand, 20426318 - 20427044
Alignment:
Q  18 atttatagtgtaggatgtaactcttggaggaaacttgatttcaatatgcctaattgctggagtggtagttcaaatgagcgattgtacttgaatggaatat 117  Q
    |||||||| ||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20426318 atttatagcgtaagatgtaactcttggagaaaacttgatttcaatatgcctaattgctggagtggtagttcaaatgagcgattgtacttgaatggaatat 20426417  T
Q  118 gtcattggtggcatgtgactgaagatcaggatggacattttttggtgtcatttgactttagcaatgagatgttttttacaacagagatacccttagacat 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20426418 gtcattggtggcatgtgactgaagatcaggatggacattttttggtgtcatttgactttagcaatgagatgttttttacaacagagatacccttagacat 20426517  T
Q  218 accttcagacatagataccaatttgagtgttagattaacaaagagacatttggtggtattgaatggatccattgcttcgatctcatggtatttagataca 317  Q
    ||||| |||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20426518 acctttagacataggtaccaatttgagttttagattaacaaagagacatttggtggtattgaatggatccattgcttcgatctcatggtatttagataca 20426617  T
Q  318 actacttttcacatatcaattttaagtgaactcggcgtgaaggaatcgtggaccaaactctttgttgttggaccattgctctacattgagcgtcttattg 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20426618 actacttttcacatatcaattttaagtgaactcggcgtgaaggaatcgtggaccaaactctttgttgttggaccattgctctacattgagcgtcttattg 20426717  T
Q  418 gagtggggaagaacggtgatattttcctaaaacaaaaagatggtcagctagtctgttttgatttacatacccaggagactgaaaaacttgggtgttatgg 517  Q
    ||||||||| |||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20426718 gagtggggatgaacggtgatattttcctaatataaaaagatggtcagctagtctgttttgatttacatacccaggagactgaaaaacttgggtgttatgg 20426817  T
Q  518 gaggcgttttaatattgcaatttacaagaaaagccttgtttcgattggaggaataaatcagtaattggtttttcatgtttctaccttcgaaatttatgat 617  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  20426818 gaggcgtttttatattgcaatttacaagaaaagccttgtttcgattggaggaataaatcagtaattggtttttcatgtttttaccttcgaaatttatgat 20426917  T
Q  618 tgtgtttagtaggattttacatttgtttatcaccctgatcataaatattatcaatgacatgaaaaataaagaatgtatttgataatgatgaataatgctg 717  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20426918 cgtgtttagtaggattttacatttgtttatcaccctgatcataaatattatcaatgacatgaaaaataaagaatgtatttgataatgatgaataatgctg 20427017  T
Q  718 tattattatcaattttactgtagtatt 744  Q
    |||||||||||||||||  ||||||||    
T  20427018 tattattatcaattttatagtagtatt 20427044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 18 - 408
Target Start/End: Complemental strand, 20455796 - 20455406
Alignment:
Q  18 atttatagtgtaggatgtaactcttggaggaaacttgatttcaatatgcctaattgctggagtggtagttcaaatgagcgattgtacttgaatggaatat 117  Q
    |||||||||||| |||||||||||||||||| || |||||||||||||||||| || ||||  | |||||||||||| ||||||||| || |||||||||    
T  20455796 atttatagtgtaagatgtaactcttggaggacacatgatttcaatatgcctaaatgttggaccgatagttcaaatgatcgattgtacatggatggaatat 20455697  T
Q  118 gtcattggtggcatgtgactgaagatcaggatggacattttttggtgtcatttgactttagcaatgaga-tgttttttacaacagagatacccttagaca 216  Q
    ||||||||||| |||| |||||||||| || || ||||||||||||||| ||| ||| | ||||||||| | |||||||||||| | |||||||||||||    
T  20455696 gtcattggtggtatgtaactgaagatcggggtgaacattttttggtgtcgttttactat-gcaatgagagttttttttacaacacatatacccttagaca 20455598  T
Q  217 taccttcagacatagataccaatttgagtgttagattaacaaagagacatttggtggtattgaatggatccattgcttcgatctcatggtatttagatac 316  Q
    || |||| |||||| || |||||||   |  ||||||    | |||||| |||||||| || ||||| || |||| ||||||||||||| || ||         
T  20455597 taacttcggacatatatcccaattttctttctagatttgtgacgagacacttggtggtgtttaatggttcaattggttcgatctcatggcatatatcaga 20455498  T
Q  317 aactacttttcacatatcaattttaagtgaactcggcgtgaaggaatcgtggaccaaactctttgttgttggaccattgctctacattgagc 408  Q
     | ||||| |||||||||| ||||   ||||||||||||| | ||||| | ||| |||||||| ||||||||| |||| |  ||||||||||    
T  20455497 gattacttatcacatatcatttttggatgaactcggcgtgcaagaatcatagacaaaactcttagttgttggatcatttccatacattgagc 20455406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 154 - 439
Target Start/End: Original strand, 20452920 - 20453207
Alignment:
Q  154 attttttggtgtcatttgactttagcaatgagatgttttttacaacagagatacccttagacataccttcagacatagataccaatttgagtgttagatt 253  Q
    ||||||||||||||||| |||| ||||||||  ||||||| |||||| | |||||||||| |||||||||| |  | ||| |||||||   | |||| ||    
T  20452920 attttttggtgtcatttaacttaagcaatgaagtgtttttaacaaca-acatacccttagtcataccttcaaat-tggatcccaattttctttttagttt 20453017  T
Q  254 aacaaagagacatttggtggtattgaatggatccattgcttcgatctcatggtatttag---atacaactacttttcacatatcaattttaagtgaactc 350  Q
      | |||||||| |||||| |  | ||| |||| ||||||||||||||||||||||||    ||| || || || |||||||||||||||| ||||  ||    
T  20453018 tgcgaagagacacttggtgctgcttaatagatcaattgcttcgatctcatggtatttaataaataaaattatttatcacatatcaattttaggtgagttc 20453117  T
Q  351 ggcgtgaaggaatcgtggaccaaactctttgttg-ttggaccattgctctacattgagcgtcttattggagtggggaagaacggtgatat 439  Q
    |||||||||||||| || || ||| ||||||||| ||| ||||||   |||| ||||||||| |||||||| ||| ||||||||||||||    
T  20453118 ggcgtgaaggaatcatgtactaaattctttgttgtttgaaccattttcctacgttgagcgtcatattggagcgggaaagaacggtgatat 20453207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 310 - 379
Target Start/End: Complemental strand, 48742063 - 48741994
Alignment:
Q  310 tagatacaactacttttcacatatcaattttaagtgaactcggcgtgaaggaatcgtggaccaaactctt 379  Q
    |||| |||||||| |||  ||||||||||||| |||||||||| ||||||||||| ||||| ||||||||    
T  48742063 tagagacaactaccttttgcatatcaattttaggtgaactcggtgtgaaggaatcttggactaaactctt 48741994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 318 - 426
Target Start/End: Original strand, 9569198 - 9569306
Alignment:
Q  318 actacttttcacatatcaattttaagtgaactcggcgtgaaggaatcgtggaccaaactctttgttgttggaccattgctctacattgagcgtcttattg 417  Q
    |||| |||||||||||| |||||  |||||   ||| | |||||||||||||||||||||||  |||||||||| |||   | ||||||||||| ||| |    
T  9569198 actaattttcacatatcgattttgggtgaatatggcattaaggaatcgtggaccaaactcttccttgttggaccgttgtcttgcattgagcgtcctatcg 9569297  T
Q  418 gagtgggga 426  Q
    |||||||||    
T  9569298 gagtgggga 9569306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 18 - 69
Target Start/End: Original strand, 4877557 - 4877608
Alignment:
Q  18 atttatagtgtaggatgtaactcttggaggaaacttgatttcaatatgccta 69  Q
    ||||||||| || || |||||||||||| |||||||||||||||||||||||    
T  4877557 atttatagtctaagaagtaactcttggaagaaacttgatttcaatatgccta 4877608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 318 - 391
Target Start/End: Complemental strand, 54295152 - 54295079
Alignment:
Q  318 actacttttcacatatcaattttaagtgaactcggcgtgaaggaatcgtggaccaaactctttgttgttggacc 391  Q
    |||| ||||||||||||||||||  ||||| |||| ||||  ||||||||||||||||| ||  ||||||||||    
T  54295152 actaattttcacatatcaattttgggtgaattcggtgtgatagaatcgtggaccaaacttttcattgttggacc 54295079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 323 - 424
Target Start/End: Complemental strand, 9582049 - 9581948
Alignment:
Q  323 ttttcacatatcaattttaagtgaactcggcgtgaaggaatcgtggaccaaactctttgttgttggaccattgctctacattgagcgtcttattggagtg 422  Q
    ||||||||||||||||||  |||||  |||  | ||||| || ||||||||||||||  | |||||||| |||   | ||||||||||| ||||||||||    
T  9582049 ttttcacatatcaattttgggtgaatacggtataaaggagtcatggaccaaactcttcatggttggaccgttgtcttgcattgagcgtcctattggagtg 9581950  T
Q  423 gg 424  Q
    ||    
T  9581949 gg 9581948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 323 - 424
Target Start/End: Complemental strand, 9587744 - 9587643
Alignment:
Q  323 ttttcacatatcaattttaagtgaactcggcgtgaaggaatcgtggaccaaactctttgttgttggaccattgctctacattgagcgtcttattggagtg 422  Q
    ||||||||||||||||||  |||||  |||  | ||||| || ||||||||||||||  | |||||||| |||   | ||||||||||| ||||||||||    
T  9587744 ttttcacatatcaattttgggtgaatacggtataaaggagtcatggaccaaactcttcatggttggaccgttgtcttgcattgagcgtcctattggagtg 9587645  T
Q  423 gg 424  Q
    ||    
T  9587644 gg 9587643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 318 - 379
Target Start/End: Original strand, 37897951 - 37898012
Alignment:
Q  318 actacttttcacatatcaattttaagtgaactcggcgtgaaggaatcgtggaccaaactctt 379  Q
    |||||||||||| ||||| ||||  | ||||| ||  |||||||||||||||||||||||||    
T  37897951 actacttttcacgtatcagttttgggcgaacttggtatgaaggaatcgtggaccaaactctt 37898012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 117; Significance: 4e-59; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 117; E-Value: 4e-59
Query Start/End: Original strand, 36 - 625
Target Start/End: Complemental strand, 15338504 - 15337909
Alignment:
Q  36 aactcttggaggaaacttgatttcaatatgcctaattgctggagtggtagttcaaatgagcgattgtacttgaatggaatatgtcattggtggcatgtga 135  Q
    |||||||||| ||||| |||| | |||||||||||  | ||| || || ||||| |||| | ||||||| |  ||||| | | ||||||||||  ||| |    
T  15338504 aactcttggaagaaacatgatgttaatatgcctaagcgttggtgtagtggttcatatgaaccattgtacattgatggattgtctcattggtggtctgtaa 15338405  T
Q  136 ctgaagatcaggatggacattttttggtgtcatttgactttagcaatgagatgttttttacaacagagatacccttagacataccttcagacatagatac 235  Q
     |||| ||   |||| |||| |||| || |||||||| || ||||| |||||||||||||| |||   |||||  |||||||||| | ||||||||||||    
T  15338404 gtgaaaattgtgatgaacatcttttagtttcatttgatttgagcaacgagatgttttttacgacaaccatacctatagacataccgttagacatagatac 15338305  T
Q  236 caatttgagtgttagattaacaaagagacatttggtggtattgaatggatccattgcttcgatctcatggtattta---gatacaactacttttcacata 332  Q
     |||||   | || | ||     | ||||  ||||||||  | ||| |||||||||||||||||||||||||||||   |||| ||||| |||| |||||    
T  15338304 aaattttcatcttggttttgtgtatagacgattggtggtgcttaatagatccattgcttcgatctcatggtatttattagataaaactattttttacata 15338205  T
Q  333 tcaattttaagtgaactcggcgtgaaggaatcgtggaccaaactctttgttgttggaccattgctctacattgagcgtcttattggagtggggaagaacg 432  Q
    ||||||||  |||||||||||||||| ||||| ||||| ||||| ||||||||||||||| | |  |||||||| ||||||||||||| ||| ||||| |    
T  15338204 tcaattttgggtgaactcggcgtgaaagaatcatggactaaactatttgttgttggaccacttccttacattgatcgtcttattggagcgggaaagaatg 15338105  T
Q  433 gtgatattttcctaaaacaaaaagatggtcagctagtctgttttgatttacatacccaggagactgaaaaacttgggtgttatgggag-gcgttt---ta 528  Q
    ||||||| ||| |  || ||||||||||| |||||||||||||   ||||  ||| ||| |||||||| ||||| |||||||  |||| || |||   |     
T  15338104 gtgatatattcttccaaaaaaaagatggtaagctagtctgtttcagtttaagtactcagaagactgaagaactt-ggtgttaaaggagcgcatttttatg 15338006  T
Q  529 atattgcaatttacaagaaaagccttgtttcgattggaggaataaatcagtaattggtttttcatgtttctaccttcgaaatttatgattgtgttta 625  Q
    || |||||||||||||||||||  || | || ||||| ||||||||||| |||||||||||||||||||   |||| || |||||||||||||||||    
T  15338005 atcttgcaatttacaagaaaagttttctctcaattggtggaataaatcattaattggtttttcatgtttaccccttagagatttatgattgtgttta 15337909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 117; E-Value: 4e-59
Query Start/End: Original strand, 36 - 625
Target Start/End: Complemental strand, 15427569 - 15426974
Alignment:
Q  36 aactcttggaggaaacttgatttcaatatgcctaattgctggagtggtagttcaaatgagcgattgtacttgaatggaatatgtcattggtggcatgtga 135  Q
    |||||||||| ||||| |||| | |||||||||||  | ||| || || ||||| |||| | ||||||| |  ||||| | | ||||||||||  ||| |    
T  15427569 aactcttggaagaaacatgatgttaatatgcctaagcgttggtgtagtggttcatatgaaccattgtacattgatggattgtctcattggtggtctgtaa 15427470  T
Q  136 ctgaagatcaggatggacattttttggtgtcatttgactttagcaatgagatgttttttacaacagagatacccttagacataccttcagacatagatac 235  Q
     |||| ||   |||| |||| |||| || |||||||| || ||||| |||||||||||||| |||   |||||  |||||||||| | ||||||||||||    
T  15427469 gtgaaaattgtgatgaacatcttttagtttcatttgatttgagcaacgagatgttttttacgacaaccatacctatagacataccgttagacatagatac 15427370  T
Q  236 caatttgagtgttagattaacaaagagacatttggtggtattgaatggatccattgcttcgatctcatggtattta---gatacaactacttttcacata 332  Q
     |||||   | || | ||     | ||||  ||||||||  | ||| |||||||||||||||||||||||||||||   |||| ||||| |||| |||||    
T  15427369 aaattttcatcttggttttgtgtatagacgattggtggtgcttaatagatccattgcttcgatctcatggtatttattagataaaactattttttacata 15427270  T
Q  333 tcaattttaagtgaactcggcgtgaaggaatcgtggaccaaactctttgttgttggaccattgctctacattgagcgtcttattggagtggggaagaacg 432  Q
    ||||||||  |||||||||||||||| ||||| ||||| ||||| ||||||||||||||| | |  |||||||| ||||||||||||| ||| ||||| |    
T  15427269 tcaattttgggtgaactcggcgtgaaagaatcatggactaaactatttgttgttggaccacttccttacattgatcgtcttattggagcgggaaagaatg 15427170  T
Q  433 gtgatattttcctaaaacaaaaagatggtcagctagtctgttttgatttacatacccaggagactgaaaaacttgggtgttatgggag-gcgttt---ta 528  Q
    ||||||| ||| |  || ||||||||||| |||||||||||||   ||||  ||| ||| |||||||| ||||| |||||||  |||| || |||   |     
T  15427169 gtgatatattcttccaaaaaaaagatggtaagctagtctgtttcagtttaagtactcagaagactgaagaactt-ggtgttaaaggagcgcatttttatg 15427071  T
Q  529 atattgcaatttacaagaaaagccttgtttcgattggaggaataaatcagtaattggtttttcatgtttctaccttcgaaatttatgattgtgttta 625  Q
    || |||||||||||||||||||  || | || ||||| ||||||||||| |||||||||||||||||||   |||| || |||||||||||||||||    
T  15427070 atcttgcaatttacaagaaaagttttctctcaattggtggaataaatcattaattggtttttcatgtttaccccttagagatttatgattgtgttta 15426974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 117; E-Value: 4e-59
Query Start/End: Original strand, 36 - 625
Target Start/End: Complemental strand, 15518873 - 15518278
Alignment:
Q  36 aactcttggaggaaacttgatttcaatatgcctaattgctggagtggtagttcaaatgagcgattgtacttgaatggaatatgtcattggtggcatgtga 135  Q
    |||||||||| ||||| |||| | |||||||||||  | ||| || || ||||| |||| | ||||||| |  ||||| | | ||||||||||  ||| |    
T  15518873 aactcttggaagaaacatgatgttaatatgcctaagcgttggtgtagtggttcatatgaaccattgtacattgatggattgtctcattggtggtctgtaa 15518774  T
Q  136 ctgaagatcaggatggacattttttggtgtcatttgactttagcaatgagatgttttttacaacagagatacccttagacataccttcagacatagatac 235  Q
     |||| ||   |||| |||| |||| || |||||||| || ||||| |||||||||||||| |||   |||||  |||||||||| | ||||||||||||    
T  15518773 gtgaaaattgtgatgaacatcttttagtttcatttgatttgagcaacgagatgttttttacgacaaccatacctatagacataccgttagacatagatac 15518674  T
Q  236 caatttgagtgttagattaacaaagagacatttggtggtattgaatggatccattgcttcgatctcatggtattta---gatacaactacttttcacata 332  Q
     |||||   | || | ||     | ||||  ||||||||  | ||| |||||||||||||||||||||||||||||   |||| ||||| |||| |||||    
T  15518673 aaattttcatcttggttttgtgtatagacgattggtggtgcttaatagatccattgcttcgatctcatggtatttattagataaaactattttttacata 15518574  T
Q  333 tcaattttaagtgaactcggcgtgaaggaatcgtggaccaaactctttgttgttggaccattgctctacattgagcgtcttattggagtggggaagaacg 432  Q
    ||||||||  |||||||||||||||| ||||| ||||| ||||| ||||||||||||||| | |  |||||||| ||||||||||||| ||| ||||| |    
T  15518573 tcaattttgggtgaactcggcgtgaaagaatcatggactaaactatttgttgttggaccacttccttacattgatcgtcttattggagcgggaaagaatg 15518474  T
Q  433 gtgatattttcctaaaacaaaaagatggtcagctagtctgttttgatttacatacccaggagactgaaaaacttgggtgttatgggag-gcgttt---ta 528  Q
    ||||||| ||| |  || ||||||||||| |||||||||||||   ||||  ||| ||| |||||||| ||||| |||||||  |||| || |||   |     
T  15518473 gtgatatattcttccaaaaaaaagatggtaagctagtctgtttcagtttaagtactcagaagactgaagaactt-ggtgttaaaggagcgcatttttatg 15518375  T
Q  529 atattgcaatttacaagaaaagccttgtttcgattggaggaataaatcagtaattggtttttcatgtttctaccttcgaaatttatgattgtgttta 625  Q
    || |||||||||||||||||||  || | || ||||| ||||||||||| |||||||||||||||||||   |||| || |||||||||||||||||    
T  15518374 atcttgcaatttacaagaaaagttttctctcaattggtggaataaatcattaattggtttttcatgtttaccccttagagatttatgattgtgttta 15518278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 323 - 391
Target Start/End: Original strand, 12652271 - 12652339
Alignment:
Q  323 ttttcacatatcaattttaagtgaactcggcgtgaaggaatcgtggaccaaactctttgttgttggacc 391  Q
    |||||||||||| |||||  ||||| | || ||  ||||||||||||| ||||||||||||||||||||    
T  12652271 ttttcacatatcgattttgggtgaaattggtgttgaggaatcgtggactaaactctttgttgttggacc 12652339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 324 - 391
Target Start/End: Original strand, 26607069 - 26607136
Alignment:
Q  324 tttcacatatcaattttaagtgaactcggcgtgaaggaatcgtggaccaaactctttgttgttggacc 391  Q
    ||||| |||||| ||||| | |||||||| ||||| ||||| ||||  ||||||||||||||||||||    
T  26607069 tttcatatatcagttttaggcgaactcggtgtgaaagaatcatggattaaactctttgttgttggacc 26607136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 93; Significance: 7e-45; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 93; E-Value: 7e-45
Query Start/End: Original strand, 147 - 506
Target Start/End: Original strand, 51869830 - 51870192
Alignment:
Q  147 gatggacattttttggtgtcatttgactttagcaatgagatgttttttacaacagagatacccttagacataccttcagacatagataccaatttgagtg 246  Q
    |||| |||||| |||||||||||| |||| ||||||||| ||||||| ||||||   |||||||||||||| |||||||| ||  || ||||||| | |     
T  51869830 gatgaacatttcttggtgtcatttaacttgagcaatgagttgtttttaacaacaatcatacccttagacatgccttcagatatgtatcccaattttattt 51869929  T
Q  247 ttagattaacaaagagacatttggtggtattgaatggatccattgcttcgatctcatggtattta---gatacaactacttttcacatatcaattttaag 343  Q
     ||| ||    || ||||| |||||||| || |||||||| |||| | |||| ||||||||||||   |||| |||||||| |||||||||||||||| |    
T  51869930 atagttttgtgaatagacacttggtggtgtttaatggatcaattgttacgatatcatggtatttatcagataaaactacttatcacatatcaattttagg 51870029  T
Q  344 tgaactcggcgtgaaggaatcgtggaccaaactctttgttgttggaccattgctctacattgagcgtcttattggagtggggaagaacggtgatattttc 443  Q
    ||||||||||||||||||||  | ||| ||||||||| |||||||  ||||   ||||||||| |||||||||||||  || |||||| ||||||| ||     
T  51870030 tgaactcggcgtgaaggaattatagactaaactctttattgttgggtcattttcctacattgatcgtcttattggagcaggaaagaactgtgatatattg 51870129  T
Q  444 ctaaaacaaaaagatggtcagctagtctgttttgatttacatacccaggagactgaaaaactt 506  Q
     |  || ||| ||||||||| ||||| | ||||||||||  ||||||  |||||||| |||||    
T  51870130 ttccaaaaaatagatggtcaactagtgtattttgatttaagtacccaaaagactgaagaactt 51870192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 315 - 394
Target Start/End: Original strand, 368798 - 368877
Alignment:
Q  315 acaactacttttcacatatcaattttaagtgaactcggcgtgaaggaatcgtggaccaaactctttgttgttggaccatt 394  Q
    |||||||||||||||||||||||| |  ||||| | || ||||||||||| |||| |||||||||  |||||||||||||    
T  368798 acaactacttttcacatatcaattcttggtgaaattggtgtgaaggaatcatggatcaaactcttcattgttggaccatt 368877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 318 - 394
Target Start/End: Original strand, 361883 - 361959
Alignment:
Q  318 actacttttcacatatcaattttaagtgaactcggcgtgaaggaatcgtggaccaaactctttgttgttggaccatt 394  Q
    ||||||||||||||||||||| |  ||||| |||| ||||||||||| ||||  || |||||  |||||||||||||    
T  361883 actacttttcacatatcaattcttggtgaaatcggtgtgaaggaatcatggataaagctcttcattgttggaccatt 361959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 160 - 190
Target Start/End: Complemental strand, 22535421 - 22535391
Alignment:
Q  160 tggtgtcatttgactttagcaatgagatgtt 190  Q
    |||||||||||||||||||||||||||||||    
T  22535421 tggtgtcatttgactttagcaatgagatgtt 22535391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 87; Significance: 3e-41; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 147 - 420
Target Start/End: Complemental strand, 44938041 - 44937765
Alignment:
Q  147 gatggacattttttggtgtcatttgactttagcaatgagatgttttttacaacagagatacccttagacataccttcagacatagataccaatttgagtg 246  Q
    |||| |||||| || || |||||||| || | ||||||||||||||||||||||   |||||| |||||||||||| |||||||||||| || ||   |     
T  44938041 gatgaacatttattagtttcatttgatttgaacaatgagatgttttttacaacatccatacccatagacatacctttagacatagatacaaacttttatc 44937942  T
Q  247 ttagattaacaaagagacatttggtggtattgaatggatccattgcttcgatctcatggtattta---gatacaactacttttcacatatcaattttaag 343  Q
    || | ||       ||||  ||||||||  | ||| ||| ||||||||||||||| |||||||||   |||||||||||||||||||||||||||||  |    
T  44937941 ttggttttgtgtgtagacgattggtggtgcttaatagattcattgcttcgatctcgtggtatttattagatacaactacttttcacatatcaattttggg 44937842  T
Q  344 tgaactcggcgtgaaggaatcgtggaccaaactctttgttgttggaccattgctctacattgagcgtcttattggag 420  Q
    ||||||||||||||| ||||| ||||| ||||||||||||||||||||| | | |||||| ||||||||||||||||    
T  44937841 tgaactcggcgtgaaagaatcatggactaaactctttgttgttggaccactaccctacatggagcgtcttattggag 44937765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 283 - 439
Target Start/End: Complemental strand, 44918594 - 44918435
Alignment:
Q  283 gatccattgcttcgatctcatggtattt---agatacaactacttttcacatatcaattttaagtgaactcggcgtgaaggaatcgtggaccaaactctt 379  Q
    ||||| || ||||||||||||||||||    ||||||| ||| ||||||||||||||||||| ||||||| || | ||| ||||||||||| ||||||||    
T  44918594 gatccgtttcttcgatctcatggtattattcagatacacctatttttcacatatcaattttaggtgaacttggtgggaaagaatcgtggactaaactctt 44918495  T
Q  380 tgttgttggaccattgctctacattgagcgtcttattggagtggggaagaacggtgatat 439  Q
    ||||||||||||| ||| ||| ||| || || |||| ||||  ||||| || ||||||||    
T  44918494 tgttgttggaccactgccctatattaagtgttttatcggagcagggaaaaatggtgatat 44918435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 527 - 643
Target Start/End: Complemental strand, 44912379 - 44912263
Alignment:
Q  527 taatattgcaatttacaagaaaagccttgtttcgattggaggaataaatcagtaattggtttttcatgtttctaccttcgaaat-ttatgattgtgttta 625  Q
    |||||||||||||||||||||| | ||| | ||| |||| ||||||||| ||||||||| ||||| |||||  ||||| ||||| ||| |||||||||||    
T  44912379 taatattgcaatttacaagaaaggtcttctctcgcttggcggaataaataagtaattggattttcgtgtttgcacctt-gaaatattaggattgtgttta 44912281  T
Q  626 gtaggattttacatttgt 643  Q
     ||| ||||||| |||||    
T  44912280 ttagaattttacttttgt 44912263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 324 - 392
Target Start/End: Complemental strand, 44912585 - 44912517
Alignment:
Q  324 tttcacatatcaattttaagtgaactcggcgtgaaggaatcgtggaccaaactctttgttgttggacca 392  Q
    ||||||||||| |||||  ||||||| || |||||||||||||| || |||||||||||||||||||||    
T  44912585 tttcacatatcgattttgggtgaacttggtgtgaaggaatcgtgaactaaactctttgttgttggacca 44912517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 322 - 376
Target Start/End: Complemental strand, 44141509 - 44141455
Alignment:
Q  322 cttttcacatatcaattttaagtgaactcggcgtgaaggaatcgtggaccaaact 376  Q
    ||||| ||||||||||| || |||||||||| ||||||||||| |||||||||||    
T  44141509 cttttaacatatcaattctaggtgaactcggtgtgaaggaatcatggaccaaact 44141455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 529 - 589
Target Start/End: Complemental strand, 44918342 - 44918282
Alignment:
Q  529 atattgcaatttacaagaaaagccttgtttcgattggaggaataaatcagtaattggtttt 589  Q
    |||||||||||||||||||||| ||| | ||| |||| ||||||||| ||||||| |||||    
T  44918342 atattgcaatttacaagaaaagtcttctctcggttggtggaataaataagtaattcgtttt 44918282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 33 - 71
Target Start/End: Complemental strand, 44912848 - 44912810
Alignment:
Q  33 tgtaactcttggaggaaacttgatttcaatatgcctaat 71  Q
    |||||||||||||| ||||||||| ||||||||||||||    
T  44912848 tgtaactcttggagtaaacttgatatcaatatgcctaat 44912810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 45; Significance: 3e-16; HSPs: 2)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 318 - 426
Target Start/End: Complemental strand, 39890 - 39782
Alignment:
Q  318 actacttttcacatatcaattttaagtgaactcggcgtgaaggaatcgtggaccaaactctttgttgttggaccattgctctacattgagcgtcttattg 417  Q
    ||||||||||||||| |||||||  ||||||||||| | ||||||||||||| ||||||||||  ||||||||| |||   | | ||||||||| ||| |    
T  39890 actacttttcacatagcaattttgggtgaactcggcattaaggaatcgtggatcaaactctttactgttggaccgttgtcttgcgttgagcgtcctatcg 39791  T
Q  418 gagtgggga 426  Q
    |||||||||    
T  39790 gagtgggga 39782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 318 - 379
Target Start/End: Complemental strand, 33539 - 33478
Alignment:
Q  318 actacttttcacatatcaattttaagtgaactcggcgtgaaggaatcgtggaccaaactctt 379  Q
    ||||||||| ||||| |||||||  ||||||||||| | |||||||||||||||||||||||    
T  33539 actacttttgacatagcaattttgggtgaactcggcattaaggaatcgtggaccaaactctt 33478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 3e-16; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 315 - 395
Target Start/End: Complemental strand, 32740789 - 32740709
Alignment:
Q  315 acaactacttttcacatatcaattttaagtgaactcggcgtgaaggaatcgtggaccaaactctttgttgttggaccattg 395  Q
    ||||||||||||| | ||||||||||  ||||| ||||| | |||||||||||||||||||||||  ||||||||||||||    
T  32740789 acaactacttttctcgtatcaattttgggtgaattcggcataaaggaatcgtggaccaaactcttcattgttggaccattg 32740709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 315 - 426
Target Start/End: Original strand, 29131311 - 29131422
Alignment:
Q  315 acaactacttttcacatatcaattttaagtgaactcggcgtgaaggaatcgtggaccaaactctttgttgttggaccattgctct-acattgagcgtctt 413  Q
    ||||||||||||||||||||||||||  ||||| | ||| | || ||||||||||||||  ||||  |||||||||||||| |||  | ||||||||| |    
T  29131311 acaactacttttcacatatcaattttgggtgaatttggcataaaagaatcgtggaccaagatcttcattgttggaccattg-tctggcgttgagcgtcct 29131409  T
Q  414 attggagtgggga 426  Q
    |||||||||||||    
T  29131410 attggagtgggga 29131422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 318 - 430
Target Start/End: Complemental strand, 32960805 - 32960693
Alignment:
Q  318 actacttttcacatatcaattttaagtgaactcggcgtgaaggaatcgtggaccaaactctttgttgttggaccattgctctacattgagcgtcttattg 417  Q
    |||||||||||  ||||||||||   |||| ||||  |||||||||| |||| |||||||||| ||||| |||||||||  |   ||||||||| ||| |    
T  32960805 actacttttcatgtatcaattttggatgaaatcggtatgaaggaatcttggatcaaactctttattgttagaccattgccttgtgttgagcgtcctatgg 32960706  T
Q  418 gagtggggaagaa 430  Q
    |||||||||||||    
T  32960705 gagtggggaagaa 32960693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 318 - 391
Target Start/End: Original strand, 29012838 - 29012911
Alignment:
Q  318 actacttttcacatatcaattttaagtgaactcggcgtgaaggaatcgtggaccaaactctttgttgttggacc 391  Q
    |||| ||||||||||||||||||  | ||  |||| ||||||||||| ||||||||||||||  ||||||||||    
T  29012838 actaattttcacatatcaattttgggggatttcggtgtgaaggaatcatggaccaaactcttcattgttggacc 29012911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 321 - 389
Target Start/End: Complemental strand, 34258323 - 34258255
Alignment:
Q  321 acttttcacatatcaattttaagtgaactcggcgtgaaggaatcgtggaccaaactctttgttgttgga 389  Q
    |||||||||||||||||||| |  |||| ||||||||| ||||| ||||| |||||||| ||| |||||    
T  34258323 acttttcacatatcaattttgaacgaacacggcgtgaaagaatcatggacaaaactcttcgttattgga 34258255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 318 - 392
Target Start/End: Original strand, 29145302 - 29145376
Alignment:
Q  318 actacttttcacatatcaattttaagtgaactcggcgtgaaggaatcgtggaccaaactctttgttgttggacca 392  Q
    |||| ||||||||||||||||||  ||| | | ||  |||||||||| ||||||||||||||| || ||||||||    
T  29145302 actaattttcacatatcaattttgggtggattaggtatgaaggaatcatggaccaaactctttattcttggacca 29145376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 318 - 379
Target Start/End: Original strand, 29300084 - 29300145
Alignment:
Q  318 actacttttcacatatcaattttaagtgaactcggcgtgaaggaatcgtggaccaaactctt 379  Q
    |||||||||||||||||||||||  |||| ||| |  | ||||||||||||||||| |||||    
T  29300084 actacttttcacatatcaattttgggtgagctcagtataaaggaatcgtggaccaatctctt 29300145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 3e-16; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 315 - 379
Target Start/End: Complemental strand, 42637423 - 42637359
Alignment:
Q  315 acaactacttttcacatatcaattttaagtgaactcggcgtgaaggaatcgtggaccaaactctt 379  Q
    ||||||||||||||||||||||||||  ||||| |||| ||||||||||| ||||||||||||||    
T  42637423 acaactacttttcacatatcaattttgggtgaagtcggggtgaaggaatcatggaccaaactctt 42637359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 279 - 391
Target Start/End: Original strand, 30651529 - 30651641
Alignment:
Q  279 aatggatccattgcttcgatctcatggtatttagatacaactacttttcacatatcaattttaagtgaactcggcgtgaaggaatcgtggaccaaactct 378  Q
    ||||| |||||||||| |||||| ||||||  |||||| || || |||||||||||| ||||| ||||||| || ||||  ||||| ||||| |||||||    
T  30651529 aatggttccattgctttgatctcttggtatgaagatacgaccacctttcacatatcagttttaggtgaacttggtgtgagtgaatcatggactaaactct 30651628  T
Q  379 ttgttgttggacc 391  Q
    || || |||||||    
T  30651629 ttattattggacc 30651641  T

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Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 325 - 387
Target Start/End: Original strand, 40549282 - 40549344
Alignment:
Q  325 ttcacatatcaattttaagtgaactcggcgtgaaggaatcgtggaccaaactctttgttgttg 387  Q
    ||||||||||||||||  ||||| |||| ||||||||||| |||| |||||||||||||||||    
T  40549282 ttcacatatcaattttgggtgaagtcggtgtgaaggaatcatggatcaaactctttgttgttg 40549344  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 279 - 379
Target Start/End: Original strand, 25628154 - 25628254
Alignment:
Q  279 aatggatccattgcttcgatctcatggtatttagatacaactacttttcacatatcaattttaagtgaactcggcgtgaaggaatcgtggaccaaactct 378  Q
    ||||| |||||||||| |||||| ||||||  ||| || || || |||||||||||| ||||| ||||||| || ||||  ||||| ||||| |||||||    
T  25628154 aatggttccattgctttgatctcttggtatggagacacgaccacctttcacatatcagttttaggtgaacttggtgtgagtgaatcatggactaaactct 25628253  T
Q  379 t 379  Q
    |    
T  25628254 t 25628254  T

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Target: scaffold0129 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 318 - 391
Target Start/End: Complemental strand, 17225 - 17152
Alignment:
Q  318 actacttttcacatatcaattttaagtgaactcggcgtgaaggaatcgtggaccaaactctttgttgttggacc 391  Q
    |||||||||||||| || ||| |  |||||||||| |||||||| || ||||| |||||||| ||| |||||||    
T  17225 actacttttcacatttctattctgggtgaactcggtgtgaaggagtcttggactaaactcttcgttattggacc 17152  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 318 - 379
Target Start/End: Complemental strand, 44550553 - 44550492
Alignment:
Q  318 actacttttcacatatcaattttaagtgaactcggcgtgaaggaatcgtggaccaaactctt 379  Q
    ||||||||||| |||||||||||| ||||| |||| |||||| |||  ||||| ||||||||    
T  44550553 actacttttcaaatatcaattttaggtgaattcggtgtgaagaaattatggactaaactctt 44550492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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