View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2664_low_12 (Length: 283)
Name: NF2664_low_12
Description: NF2664
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2664_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 248; Significance: 1e-138; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 1 - 276
Target Start/End: Complemental strand, 3076564 - 3076289
Alignment:
| Q |
1 |
actttgtaacatacacttgagtgtatttttagtaagaattcttgttccattttagagagtattttaggagatattgagagaaaattttgtcatttgtcct |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3076564 |
actttgtaacatacacttgagtgtatttttagtaagaattcttgttccattttagagagtattttaggagatattgagagaaaattttgtcatttgtcct |
3076465 |
T |
|
| Q |
101 |
catcactataagaggacttgttgtactattttcttttatatagtggaactttgctctcgatcgcccgtggttttttacttctcatattgaggagttttcc |
200 |
Q |
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|
||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |
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| T |
3076464 |
catcactataagaagacttgttgtactcttttcttttatatagtggaactttgctctcaatcgcccgtggttttttacttctcatatttaggagttttcc |
3076365 |
T |
|
| Q |
201 |
acgtaaatcttgtgtgttatttctcttgttattttacttacttctctttaattctcaatttcatcgatcctatgct |
276 |
Q |
| |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||| |
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| T |
3076364 |
atgtaaatcttgtgtgttatttctcttgttattttacttacttctctttaattctcaatttcattgatcctgtgct |
3076289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 269
Target Start/End: Original strand, 29470772 - 29471040
Alignment:
| Q |
1 |
actttgtaacatacacttgagtgtatttttagtaagaattcttgttccattttagagagtattttaggagatattgagagaaaattttgtcatttgtcct |
100 |
Q |
| |
|
|||||||||||||||||| ||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |
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|
| T |
29470772 |
actttgtaacatacacttaagtgtatttttggtgagaattcttgttccattttagagagtattttaggagatattgagagaaaatattgtcctttgtcct |
29470871 |
T |
|
| Q |
101 |
catcactataagaggacttgttgtactattttcttttatatagtggaactttgctctcgatcgcccgtggttttttacttctcatattgaggagttttcc |
200 |
Q |
| |
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||| |||||||||||||||| | |||| |||||||||| |||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||| |
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| T |
29470872 |
cattactataagaggacttgctatactcttttcttttacatagtggaactttgctcttgatcgcccgtggttttttagttctcatattgaggagttttcc |
29470971 |
T |
|
| Q |
201 |
acgtaaatcttgtgtgttatttctcttgttattttacttacttctctttaattctcaatttcatcgatc |
269 |
Q |
| |
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| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
29470972 |
atgtaaatcttgtgtgttttttctcttgttattttacttacttctctttaattctcaatttcatcgatc |
29471040 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 276
Target Start/End: Complemental strand, 3073039 - 3072776
Alignment:
| Q |
1 |
actttgtaacatacacttgagtgtatttttagtaagaattcttgttccattttagagagtattttaggagatattgagagaaaattttgtcatttgtcct |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
3073039 |
actttgtaacatacacttgagtgtatttttagtgagaattcttgttccattttcgagagtattttaggagatattgagagaaaattttgtcctttgtcct |
3072940 |
T |
|
| Q |
101 |
catcactataagaggacttgttgtactattttcttttatatagtggaactttgctctcgatcgcccgtggttttttacttctcatattgaggagttttcc |
200 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3072939 |
catcactataagaggacttgttgtactcttttcttttacatagtggaactttgctctcgatcgcccgtggttttttacttctcatattgaggagttttcc |
3072840 |
T |
|
| Q |
201 |
acgtaaatcttgtgtgttatttctcttgttattttacttacttctctttaattctcaatttcatcgatcctatgct |
276 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||| |||| |
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| T |
3072839 |
acgtaaatcttgtgtgtt------------attttacttacttctctttaattctcaatttcatagatcctgtgct |
3072776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 269
Target Start/End: Original strand, 15113962 - 15114224
Alignment:
| Q |
1 |
actttgtaacatacacttgagtgtatttttagtaagaattcttgttccattttagagagtattttaggagatattgagagaaaattttgtcatttgtcct |
100 |
Q |
| |
|
||||||||||||||||||||||||| |||| || |||||||||||||||||| ||||||||||||||||||||||| |||||||| ||||| |||||||| |
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|
| T |
15113962 |
actttgtaacatacacttgagtgtacttttggtgagaattcttgttccatttgagagagtattttaggagatattgggagaaaatattgtcctttgtcct |
15114061 |
T |
|
| Q |
101 |
catcactataagaggacttgttgtactattttcttttatatagtggaactttgctctcgatcgcccgtggttttttacttctcatattgaggagttttcc |
200 |
Q |
| |
|
||| ||||||||||||||||||||||| |||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| |
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| T |
15114062 |
cattactataagaggacttgttgtactcttttcttttacatagtggaactttgctcgtgatcgcccgtggttttttacttctcatattgag------tcc |
15114155 |
T |
|
| Q |
201 |
acgtaaatcttgtgtgttatttctcttgttattttacttacttctctttaattctcaatttcatcgatc |
269 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
15114156 |
acgtaaatcttgtgtgttatttctcttgttattttacttacttctctttaattctcaatagcatcgatc |
15114224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 276
Target Start/End: Complemental strand, 15241786 - 15241513
Alignment:
| Q |
1 |
actttgtaacatacacttgagtgtatttttagtaagaattcttgttccattttagagagtattttaggagatattgagagaaaattttgtcatttgtcct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| |||||||| |
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|
| T |
15241786 |
actttgtaacatacacttgagtgtattttttgtgagaattcttgttccattttagagagtattttaggagatattaagagaaaatattgtcctttgtcct |
15241687 |
T |
|
| Q |
101 |
catcactataagaggacttgttgtactattttcttttatatagtggaactttgctctcgatcgcccgtggttttttacttctcatattgaggagttttcc |
200 |
Q |
| |
|
||| |||| ||||||| || ||||||| |||||||||| ||||||||||||||||| || | ||| |||||||| ||||||||||||||||||||||| |
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|
| T |
15241686 |
cattactacaagaggatttattgtacttttttcttttacatagtggaactttgctcgtgaccacccatggttttt--cttctcatattgaggagttttcc |
15241589 |
T |
|
| Q |
201 |
acgtaaatcttgtgtgttatttctcttgttattttacttacttctctttaattctcaatttcatcgatcctatgct |
276 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| |||||||||| |||| |
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|
| T |
15241588 |
acgtaaatcttgtgtgttatttctcttattattttacttacttctctttgattctcaattgcatcgatcctgtgct |
15241513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 182; Significance: 2e-98; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 269
Target Start/End: Complemental strand, 8565095 - 8564826
Alignment:
| Q |
1 |
actttgtaacatacacttgagtgtatttttagtaagaattcttgttccattttagagagtattttaggagatattgagagaaaattttgtcatttgtcct |
100 |
Q |
| |
|
||||||||||||||||||| |||||||||| || ||||||||||||||||||||||||||||||||||| |||||||| |||||| || || |||||||| |
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|
| T |
8565095 |
actttgtaacatacacttgggtgtattttttgtgagaattcttgttccattttagagagtattttaggaaatattgagtgaaaatattatcctttgtcct |
8564996 |
T |
|
| Q |
101 |
catcactataagaggacttgttgtactattttcttttatatagtggaactttgctctcgatcgcccgtggttttttacttctcatattgaggagttttcc |
200 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||| ||||||||||||| || || || || |||||||||||||||||||||||||||||||| |
|
|
| T |
8564995 |
catcactataagaggacttgttgtactcttttcttttacatagtggaactttattcgtgaccgtccatggttttttacttctcatattgaggagttttca |
8564896 |
T |
|
| Q |
201 |
acgtaaatcttgtgtgtt-atttctcttgttattttacttacttctctttaattctcaatttcatcgatc |
269 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
8564895 |
acgtaaatcttgtgtgttaatttctcttgttattttacttacttctctttaattctcaatagcatcgatc |
8564826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 234 - 276
Target Start/End: Original strand, 23043804 - 23043846
Alignment:
| Q |
234 |
ttacttacttctctttaattctcaatttcatcgatcctatgct |
276 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||| |||| |
|
|
| T |
23043804 |
ttacttacttctctttaattctcaattgcatcgatcctgtgct |
23043846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 234 - 269
Target Start/End: Original strand, 23048159 - 23048194
Alignment:
| Q |
234 |
ttacttacttctctttaattctcaatttcatcgatc |
269 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||| |
|
|
| T |
23048159 |
ttacttacttctctttaattctcaattgcatcgatc |
23048194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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