View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2664_low_14 (Length: 250)

Name: NF2664_low_14
Description: NF2664
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2664_low_14
NF2664_low_14
[»] chr1 (6 HSPs)
chr1 (1-247)||(42240676-42240922)
chr1 (134-179)||(11425787-11425832)
chr1 (132-177)||(46536487-46536532)
chr1 (134-177)||(16040224-16040267)
chr1 (135-177)||(5040494-5040536)
chr1 (133-177)||(4466071-4466115)
[»] chr8 (2 HSPs)
chr8 (134-177)||(7042901-7042944)
chr8 (196-237)||(18003138-18003179)
[»] chr4 (1 HSPs)
chr4 (134-177)||(22872303-22872346)
[»] chr2 (3 HSPs)
chr2 (134-177)||(45464132-45464175)
chr2 (133-177)||(37528987-37529031)
chr2 (134-177)||(28527111-28527154)
[»] chr5 (4 HSPs)
chr5 (134-174)||(26330393-26330433)
chr5 (134-177)||(42211476-42211519)
chr5 (134-176)||(33012502-33012544)
chr5 (133-177)||(19817237-19817281)
[»] chr3 (3 HSPs)
chr3 (133-177)||(17776910-17776954)
chr3 (133-177)||(19078211-19078255)
chr3 (132-168)||(39329928-39329964)
[»] scaffold0028 (1 HSPs)
scaffold0028 (137-182)||(26757-26802)
[»] chr7 (2 HSPs)
chr7 (133-177)||(6579813-6579857)
chr7 (133-177)||(11616708-11616752)


Alignment Details
Target: chr1 (Bit Score: 215; Significance: 1e-118; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 42240676 - 42240922
Alignment:
Q  1 atgactttttgtttcacggccaataaaaaatgcacacaaacattactatgaacgagacaccacttatcgtttgatattttcctaatcacaaacctcacca 100  Q
    ||||||||||||||||||||| |||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  42240676 atgactttttgtttcacggccgataaaaaaggcacacaaacattactatgaacgaaacaccacttatcgtttgatattttcctaatcacaaacctcacca 42240775  T
Q  101 tttctagttacattaactaatgtttgtgttgcttactccctccgtcccaaattaaatgagtcatttgctcatttcacgtataattaattgagattgttgt 200  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  42240776 tttctagttccattaactaatgtttgtgttgcttactccctccgtcctaaattaaatgagtcatttgctcatttcacgtataattaattgaggttgttgt 42240875  T
Q  201 tgatccacacgtttaactcttttatgtcgtcgttcctatgcttctcc 247  Q
    ||||||||||||||||||||||||||||||||||||| || ||||||    
T  42240876 tgatccacacgtttaactcttttatgtcgtcgttcctctggttctcc 42240922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 134 - 179
Target Start/End: Original strand, 11425787 - 11425832
Alignment:
Q  134 tactccctccgtcccaaattaaatgagtcatttgctcatttcacgt 179  Q
    ||||||||||||||||| |||| |||| ||||||||||||||||||    
T  11425787 tactccctccgtcccaatttaattgagccatttgctcatttcacgt 11425832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 132 - 177
Target Start/End: Complemental strand, 46536532 - 46536487
Alignment:
Q  132 cttactccctccgtcccaaattaaatgagtcatttgctcatttcac 177  Q
    ||||||||||||||||| |||||| |||||||||||||| ||||||    
T  46536532 cttactccctccgtcccgaattaactgagtcatttgctcgtttcac 46536487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 134 - 177
Target Start/End: Complemental strand, 16040267 - 16040224
Alignment:
Q  134 tactccctccgtcccaaattaaatgagtcatttgctcatttcac 177  Q
    |||||||||||||| || |||| |||||||||||||||||||||    
T  16040267 tactccctccgtccaaatttaattgagtcatttgctcatttcac 16040224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 177
Target Start/End: Original strand, 5040494 - 5040536
Alignment:
Q  135 actccctccgtcccaaattaaatgagtcatttgctcatttcac 177  Q
    ||||||||||||||| ||||| |||||| ||||||||||||||    
T  5040494 actccctccgtcccagattaagtgagtcctttgctcatttcac 5040536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 177
Target Start/End: Original strand, 4466071 - 4466115
Alignment:
Q  133 ttactccctccgtcccaaattaaatgagtcatttgctcatttcac 177  Q
    |||||||||||||||||| |||| |||| |||||| |||||||||    
T  4466071 ttactccctccgtcccaatttaattgagccatttgttcatttcac 4466115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 134 - 177
Target Start/End: Complemental strand, 7042944 - 7042901
Alignment:
Q  134 tactccctccgtcccaaattaaatgagtcatttgctcatttcac 177  Q
    |||||||||||||||||||||||||||||||||  |||||||||    
T  7042944 tactccctccgtcccaaattaaatgagtcatttattcatttcac 7042901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 196 - 237
Target Start/End: Original strand, 18003138 - 18003179
Alignment:
Q  196 gttgttgatccacacgtttaactcttttatgtcgtcgttcct 237  Q
    ||||||||||||||||||||||||||||  |||| |||||||    
T  18003138 gttgttgatccacacgtttaactcttttccgtcgccgttcct 18003179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 134 - 177
Target Start/End: Original strand, 22872303 - 22872346
Alignment:
Q  134 tactccctccgtcccaaattaaatgagtcatttgctcatttcac 177  Q
    |||||||||||||||||||||| |||| ||||||||||||||||    
T  22872303 tactccctccgtcccaaattaagtgagccatttgctcatttcac 22872346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 134 - 177
Target Start/End: Original strand, 45464132 - 45464175
Alignment:
Q  134 tactccctccgtcccaaattaaatgagtcatttgctcatttcac 177  Q
    ||||| |||||||||||||||| |||||||||||||||||||||    
T  45464132 tactctctccgtcccaaattaagtgagtcatttgctcatttcac 45464175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 133 - 177
Target Start/End: Original strand, 37528987 - 37529031
Alignment:
Q  133 ttactccctccgtcccaaattaaatgagtcatttgctcatttcac 177  Q
    |||||||||||||||||| |||| ||||||||||| |||||||||    
T  37528987 ttactccctccgtcccaatttaactgagtcatttgttcatttcac 37529031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 134 - 177
Target Start/End: Complemental strand, 28527154 - 28527111
Alignment:
Q  134 tactccctccgtcccaaattaaatgagtcatttgctcatttcac 177  Q
    |||||| |||||||| |||||| |||||||||||||||||||||    
T  28527154 tactccatccgtcccgaattaactgagtcatttgctcatttcac 28527111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 134 - 174
Target Start/End: Complemental strand, 26330433 - 26330393
Alignment:
Q  134 tactccctccgtcccaaattaaatgagtcatttgctcattt 174  Q
    |||||| ||||||||||||||| ||||||||||||||||||    
T  26330433 tactccttccgtcccaaattaagtgagtcatttgctcattt 26330393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 134 - 177
Target Start/End: Complemental strand, 42211519 - 42211476
Alignment:
Q  134 tactccctccgtcccaaattaaatgagtcatttgctcatttcac 177  Q
    ||||||||| ||||||||||||  ||||||||||||||||||||    
T  42211519 tactccctctgtcccaaattaaccgagtcatttgctcatttcac 42211476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 134 - 176
Target Start/End: Complemental strand, 33012544 - 33012502
Alignment:
Q  134 tactccctccgtcccaaattaaatgagtcatttgctcatttca 176  Q
    |||||||||||||||  ||||| ||||||||||||||||||||    
T  33012544 tactccctccgtcccggattaactgagtcatttgctcatttca 33012502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 177
Target Start/End: Complemental strand, 19817281 - 19817237
Alignment:
Q  133 ttactccctccgtcccaaattaaatgagtcatttgctcatttcac 177  Q
    ||||||||||||||||||||||| |||| |||||| | |||||||    
T  19817281 ttactccctccgtcccaaattaagtgagccatttgattatttcac 19817237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 133 - 177
Target Start/End: Original strand, 17776910 - 17776954
Alignment:
Q  133 ttactccctccgtcccaaattaaatgagtcatttgctcatttcac 177  Q
    ||||| ||||||||||| ||||| |||||||||||||||||||||    
T  17776910 ttacttcctccgtcccagattaactgagtcatttgctcatttcac 17776954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 133 - 177
Target Start/End: Original strand, 19078211 - 19078255
Alignment:
Q  133 ttactccctccgtcccaaattaaatgagtcatttgctcatttcac 177  Q
    ||||| ||||||||||| ||||| |||||||||||||||||||||    
T  19078211 ttacttcctccgtcccagattaactgagtcatttgctcatttcac 19078255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 168
Target Start/End: Complemental strand, 39329964 - 39329928
Alignment:
Q  132 cttactccctccgtcccaaattaaatgagtcatttgc 168  Q
    |||||||||||||||||| | ||||||||||||||||    
T  39329964 cttactccctccgtcccataataaatgagtcatttgc 39329928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 137 - 182
Target Start/End: Complemental strand, 26802 - 26757
Alignment:
Q  137 tccctccgtcccaaattaaatgagtcatttgctcatttcacgtata 182  Q
    ||||||||||||| ||||| |||||||||||||||  |||||||||    
T  26802 tccctccgtcccagattaactgagtcatttgctcaaatcacgtata 26757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 177
Target Start/End: Complemental strand, 6579857 - 6579813
Alignment:
Q  133 ttactccctccgtcccaaattaaatgagtcatttgctcatttcac 177  Q
    |||||||||||||  |||||||| ||| |||||||||||||||||    
T  6579857 ttactccctccgtttcaaattaagtgaatcatttgctcatttcac 6579813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 177
Target Start/End: Complemental strand, 11616752 - 11616708
Alignment:
Q  133 ttactccctccgtcccaaattaaatgagtcatttgctcatttcac 177  Q
    ||||||||||||||||  ||||| |||| ||||||||||||||||    
T  11616752 ttactccctccgtcccggattaactgagccatttgctcatttcac 11616708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University