View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2664_low_3 (Length: 643)
Name: NF2664_low_3
Description: NF2664
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2664_low_3 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 518; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 518; E-Value: 0
Query Start/End: Original strand, 1 - 580
Target Start/End: Original strand, 19197680 - 19198256
Alignment:
| Q |
1 |
ttttatcatttcagacttattgttcatactagactgctaattgttttacagatagcatctactcatgtttttgaactttgaaaaagttatgaataagaca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| || |
|
|
| T |
19197680 |
ttttatcatttcagacttattgttcatactagactgctaattgttttacagatagcatctactcatgttttttaactttgaaaaagttatgaataaggca |
19197779 |
T |
|
| Q |
101 |
caaatttaacaagacctagaacattatctaattttaggtaaggaagcatttcatgacctgcttaaagaaagcaaaaatgaattagatctatgaaacctaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19197780 |
caaatttaacaagacctagaacattatctaattttaggtaaggaagcatttcatgacctgcttaaagaaagcaaaaatgaattagatctatgaaacctaa |
19197879 |
T |
|
| Q |
201 |
taaagagtgtctgagagaaacctgttgcttcattagctcgcgtttggcttttatcttcttcttgtcttcccaggaatctatcaactctttagacttctca |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19197880 |
taaagagtgtctgagagaaacctgttgcttcattagctcgcgtttggcttttatcttcttcttgtcttcccaggaatctatcaactctttagacttctca |
19197979 |
T |
|
| Q |
301 |
taccagctgacaatgtttttcattagtatataaactgcatgtaatgcttgattctagagatgataatatttattctagttatgtttgagagtgttttctt |
400 |
Q |
| |
|
||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19197980 |
tac---ctgacaatatttttcattagtatataaactgcatgtaatgcttgattctagagatgataatatttattctagttatgtttgagagtgttttctt |
19198076 |
T |
|
| Q |
401 |
tgttagaaattcaatgtaatcctgcttccaagtacctttgtttgatcttgtcgggctcagttctctcctgtatatttgcccattgtttgatcttgtcgat |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| |||||||| ||||||||||||||| |
|
|
| T |
19198077 |
tgttagaaattcaatgtaatcctgcttccaagtacctttggttgatcttgtcgggctcagttctctcctgtttatctgcccattatttgatcttgtcgat |
19198176 |
T |
|
| Q |
501 |
caaagtttcatccaatacatatgcacttgtctccccattgtttgatcctgttgtagtctctctttgagggtcaggtttcc |
580 |
Q |
| |
|
|| ||||| ||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19198177 |
cacagttttctcccatacatctgcacttgtctccccattgtttgatcctgttgtagtctctctttgagggtcaggtttcc |
19198256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 1 - 468
Target Start/End: Original strand, 19201660 - 19202128
Alignment:
| Q |
1 |
ttttatcatttcagacttattgttcatactagactgctaattgttttacagatagca---tctactc--atgtttttgaactttgaaaaagttatgaata |
95 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||| |||||||||||| || |||||| ||||||| ||||||| ||||| ||||||||||||||||| |
|
|
| T |
19201660 |
ttttatcattccagacttattgttcatactagacagctaattgttttgcacatagcaccatctactctcatgtttt-gaactgtgaaaaagttatgaata |
19201758 |
T |
|
| Q |
96 |
agacacaaatttaacaagacctagaacattatctaattttaggtaaggaagcatttcatgacctgcttaaagaaagcaaaaatgaattagatctatgaaa |
195 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||| ||||||||||||| ||||| || |||||||| ||| |
|
|
| T |
19201759 |
agacacaaatttaacaagacctagaacattatctgattttacctaaggaagcatttcatgacatgcttaaagaaagattaaatgcataagatctattaaa |
19201858 |
T |
|
| Q |
196 |
cctaataaagagtgtctgagagaaacctgttgcttcattagctcgcgtttggcttttatcttcttcttgtcttcccaggaatctatcaactctttagact |
295 |
Q |
| |
|
||||||||||||||||||||| |||||| |||||||||||||| |||||| ||||| ||| ||||||||||||||||||||||||||||| |||| ||| |
|
|
| T |
19201859 |
cctaataaagagtgtctgagaaaaacctcttgcttcattagcttgcgttttgctttcatcctcttcttgtcttcccaggaatctatcaacactttcaact |
19201958 |
T |
|
| Q |
296 |
tctcataccagctgacaatgtttttcattagtatataaactgcatgtaatgcttgattctagagatgataatatttattctagttatgtttgagagtgtt |
395 |
Q |
| |
|
|||||||| |||| |||||||||||||| ||||||||||| | |||||||||||||| |||||||||| |||||||||||||| ||||||||| |||| |
|
|
| T |
19201959 |
tctcatac---ctgagaatgtttttcattaatatataaactgaacgtaatgcttgattcaagagatgatattatttattctagttctgtttgagactgtt |
19202055 |
T |
|
| Q |
396 |
ttctttgttagaaattcaatgtaatcctgcttccaagtacctttgtttgatcttgtcgggctcagttctctcc |
468 |
Q |
| |
|
|||||||||| | ||||||||||||||| ||||||||||||||||||||||||| ||| |||||||||||||| |
|
|
| T |
19202056 |
ttctttgttacagattcaatgtaatcctacttccaagtacctttgtttgatcttctcgagctcagttctctcc |
19202128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 522 - 589
Target Start/End: Original strand, 19202140 - 19202207
Alignment:
| Q |
522 |
tgcacttgtctccccattgtttgatcctgttgtagtctctctttgagggtcaggtttccctgtagtct |
589 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||| |||| ||||| |||||||| ||| ||||| |
|
|
| T |
19202140 |
tgcatttgtctccccattgtttgatcctgttgtagtctgtcttagagggccaggtttctctgaagtct |
19202207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University