View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2664_low_5 (Length: 514)
Name: NF2664_low_5
Description: NF2664
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2664_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 451; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 451; E-Value: 0
Query Start/End: Original strand, 37 - 503
Target Start/End: Complemental strand, 41321981 - 41321515
Alignment:
| Q |
37 |
aatttatttccattggatatgtatatagtctgtcttaattatataatagttttagagtatatttttctaatatgttttagttttgttcatgaaaatataa |
136 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
41321981 |
aatttatttccattggatatgtatatagtctgtcttaattatataatagttttagagtatatttttctaatatgttttagttttgtacatgaaaatataa |
41321882 |
T |
|
| Q |
137 |
atcaggtacattggattaagaagcatgtgtttgtcaatgtttggcactcagagagagtgggaactctcttatatgtcatctttgcagaaatcactttttg |
236 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41321881 |
atcaggtacattggattaagaagcatgtgtttgtcaatgtttggcactcagagagagtgggaactctcttatatgtcatctttgcagaaatcactttttg |
41321782 |
T |
|
| Q |
237 |
gggagtggtagctggcgtgttgcacaagttaaaaatatactggaaactataagacaatatgatagagaagttaatgcattgatcaattgatgtatgcaag |
336 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41321781 |
gggagtggtagctggcgtgttgcacaagttaaaaatatactggaaactataagacaatatgatagagaagttaatgcattgatcaattgatgtatgcaag |
41321682 |
T |
|
| Q |
337 |
atcaactaagctcacagggacgaagtgaaagtatcttagtatgcacatatatgaataatggttaatttcatttcctataatataatttcttctcatttaa |
436 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
41321681 |
atcaactaagctcacagggacgaagtgaaagtatcttagtatgcacatatatgaataatggttaatttcatttcctataatataatttcttttcatttaa |
41321582 |
T |
|
| Q |
437 |
attcgtattagaacttgttccataaagtgcattttgagaataatagcattaaataatgtgcattcat |
503 |
Q |
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| T |
41321581 |
attcgtattagaacttgttccataaagtacattttgagaataatagcattaaataacgtgcattcat |
41321515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 100 - 282
Target Start/End: Complemental strand, 41307740 - 41307558
Alignment:
| Q |
100 |
tttctaatatgttttagttttgttcatgaaaatataaatcaggtacattggattaagaagcatgtgtttgtcaatgtttggcactcagagagagtgggaa |
199 |
Q |
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||||||||||||||| ||||| ||||||||||||||| ||||||| ||||| ||||||||||| ||| ||||||||||| |||||||||||||||||| |
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| T |
41307740 |
tttctaatatgttttcattttgcacatgaaaatataaattaggtacactggatcaagaagcatgtttttatcaatgtttggaactcagagagagtgggaa |
41307641 |
T |
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| Q |
200 |
ctctcttatatgtcatctttgcagaaatcactttttggggagtggtagctggcgtgttgcacaagttaaaaatatactggaaa |
282 |
Q |
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| T |
41307640 |
ctctcttatatgtcatctttgcagaaatcactttttggggagtggtagctggcgtgttacacaagttaaaaatatattggaaa |
41307558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 77; Significance: 2e-35; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 130 - 235
Target Start/End: Complemental strand, 34711080 - 34710971
Alignment:
| Q |
130 |
aatataaatcaggtacattggattaagaagcatgtgtttgtcaatgtttg----gcactcagagagagtgggaactctcttatatgtcatctttgcagaa |
225 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||| |||||||||||||| |||| |
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| T |
34711080 |
aatataaatcaggtacattggattaagaagcatgtgtttgtcaatgtttgacactcactcatagagagtgggaactctctaatatgtcatctttggagaa |
34710981 |
T |
|
| Q |
226 |
atcacttttt |
235 |
Q |
| |
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|||||||||| |
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| T |
34710980 |
atcacttttt |
34710971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 56 - 128
Target Start/End: Complemental strand, 34711302 - 34711230
Alignment:
| Q |
56 |
tgtatatagtctgtcttaattatataatagttttagagta--tatttttctaatatgttttagttttgttcatga |
128 |
Q |
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|||||||| |||||||||||||| ||| |||||||||| ||||||||||||||||||| |||||| ||||| |
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| T |
34711302 |
tgtatataatctgtcttaattatc--ataattttagagtacatatttttctaatatgtttttattttgtacatga |
34711230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 67; Significance: 2e-29; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 160 - 282
Target Start/End: Original strand, 27661128 - 27661250
Alignment:
| Q |
160 |
catgtgtttgtcaatgtttggcactcagagagagtgggaactctcttatatgtcatctttgcagaaatcactttttggggagtggtagctggcgtgttgc |
259 |
Q |
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|||||||| ||||||||||||||||||||| | |||||||| | ||||||||||||||||||||||||||||| |||||||| || |||||| | |||| |
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| T |
27661128 |
catgtgttcatcaatgtttggcactcagagaaattgggaactttgttatatgtcatctttgcagaaatcactttctggggagttgttgctggcatcttgc |
27661227 |
T |
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| Q |
260 |
acaagttaaaaatatactggaaa |
282 |
Q |
| |
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|||| |||| |||||| |||||| |
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| T |
27661228 |
acaaattaagaatatattggaaa |
27661250 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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