View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2664_low_7 (Length: 383)
Name: NF2664_low_7
Description: NF2664
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2664_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 1 - 377
Target Start/End: Original strand, 27309879 - 27310254
Alignment:
| Q |
1 |
aagtcaaagtcgatacatgtttgctttggatgaaatgaataatgttaggatactgccctgtttggcatcaatatactaaattacnnnnnnnnn----cac |
96 |
Q |
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| T |
27309879 |
aagtcaaagtcgatacatgtttgctttggatgaa-----taatgttaggatactaccctatttggcatcaatatactatattactttctttttttttcac |
27309973 |
T |
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| Q |
97 |
tcttttttggaaaagaaggtcaaaagaagaaaatattcaatatcaatgtcaaatcaaacgtttactaatatcttatattacatcaacaaaagtcaaccca |
196 |
Q |
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| T |
27309974 |
tcttttttgaaaaagaaggtcaaaagaagaaaacattcaatatcaatgtcaaatcaaacgtttactaatatcttatattacatcaacaaaagtcaaccca |
27310073 |
T |
|
| Q |
197 |
agaaagaaagtagttacacaaatttaaaacacaaaagttcataaaatatcactatgcaaacttggaaacacaatagtaggatttaaaataaaaatctaca |
296 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27310074 |
agaaagaaagtagttacacaaatttaaaactcaaaagttcataaaatatcactatgcaaacttggaaacacaatagtaggatttaaaataaaaatctaca |
27310173 |
T |
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| Q |
297 |
tcaatattctaaaatttatgtcttcttttcttcttcttaatctccaatgtagatggaatacttatgagcaagtattatcta |
377 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27310174 |
tcaatattctaaaatttatgtcttcttttcttcttcttaatctccaatgtagatggaatacttatgagcaagtattatcta |
27310254 |
T |
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