View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2664_low_8 (Length: 334)
Name: NF2664_low_8
Description: NF2664
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2664_low_8 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 149; Significance: 1e-78; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 17 - 238
Target Start/End: Original strand, 42240238 - 42240459
Alignment:
| Q |
17 |
gaaataacaataaacattaaaaactcacacatataaatgggggagtcgtggttcaaaccccggtcacaacatttgtcttaacagtttcaacatttttatt |
116 |
Q |
| |
|
||||||||||||||||||||||| | ||||||||| ||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
42240238 |
gaaataacaataaacattaaaaaatt-cacatataagtgggggagtcgaggttcaaaccccggtcacaatatttgtcttaacagtttcaacatttttatt |
42240336 |
T |
|
| Q |
117 |
agttgagttaagactcgtagacattacattgatatgttatttgttgannnnnnnnnaataatacttattagttaaatttaatccaacatttttactaatt |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
42240337 |
agttgagttaagactcgtagacattacattgatatgttatttgttga-ttttttttaataatacttattagttaaatttaatccaacatttttgctaatt |
42240435 |
T |
|
| Q |
217 |
c--atgtttcaaatataaataatt |
238 |
Q |
| |
|
| ||||||||||||||||||||| |
|
|
| T |
42240436 |
catatgtttcaaatataaataatt |
42240459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 31 - 126
Target Start/End: Original strand, 10600265 - 10600360
Alignment:
| Q |
31 |
cattaaaaactcacacatataaatgggggagtcgtggttcaaaccccggtcacaacatttgtcttaacagtttcaacatttttattagttgagtta |
126 |
Q |
| |
|
||||| ||||||||||||| || | | ||| ||| |||| ||||||||||||| | |||| | ||||| ||| ||||||||||||||||||||| |
|
|
| T |
10600265 |
cattagaaactcacacatacaagtagaggaatcggggtttgaaccccggtcacagcgtttggcctaacaattttgacatttttattagttgagtta |
10600360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 101 - 135
Target Start/End: Complemental strand, 30022132 - 30022098
Alignment:
| Q |
101 |
tttcaacatttttattagttgagttaagactcgta |
135 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||| |
|
|
| T |
30022132 |
tttcaacatatttattagttgagttaagactcgta |
30022098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University