View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2664_low_9 (Length: 298)
Name: NF2664_low_9
Description: NF2664
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2664_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 282
Target Start/End: Complemental strand, 42240227 - 42239949
Alignment:
| Q |
1 |
aaataaataaatcaattcaggattttatacaaataaacaaagtatcaatatttgtgtatgctattgggtttggttcagttagattttatgaaaggaatct |
100 |
Q |
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| T |
42240227 |
aaataaataaatcaattcagtattttatacaaataaacaaagtatcaatatttgtgtatgctattgggtttggttcagttagattttatgaaaggaatct |
42240128 |
T |
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| Q |
101 |
aaaattcgaactggttccagcaattgttacctaagcatatccgataaaatttgattttatgcaatttataattttttaattaaaaatgctaataagtagt |
200 |
Q |
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|||||||||||||||||||| ||| |||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| ||||||||| || |||| |
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| T |
42240127 |
aaaattcgaactggttccagtaatcgttacctaagcatatccgataaaattcgattttatgcaatttattattttttaattagaaatgctaacaaatagt |
42240028 |
T |
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| Q |
201 |
ctttaggtatttgataaaaagtttaaaataaaagtcgttttatcttacgatttttgtattcaatatattgacacgtcaaaaa |
282 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
42240027 |
ctttaggtatttgataaaaagtttaaaataaaa---gttttatcttacgatttttgtattcaatacattgacacgtcaaaaa |
42239949 |
T |
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