View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2665_high_2 (Length: 238)
Name: NF2665_high_2
Description: NF2665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2665_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 144; Significance: 7e-76; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 51743220 - 51742999
Alignment:
| Q |
1 |
cccaactcattgaaagcaacaggagtcattatcaattgaggaatgttagcaagannnnnnngtcaacacnnnnnnnagcattcattattaaaatgtaaac |
100 |
Q |
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| T |
51743220 |
cccaactcattgaaagcaacaggagtcattatcaattgaggaatgttagcaagatttctttttcaacactttttttagcattcattattaaaatgtaaac |
51743121 |
T |
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| Q |
101 |
ttgcaataatttaaaataataaaataatgagtattaaagagggtgttgnnnnnnntgttgttaaccttgctcttcctaattttgtgtatgtaaccgtgac |
200 |
Q |
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| T |
51743120 |
ttgcaataatttaaaacaataaaataatgagtattaaagagggtgtt-aaaaaaatgttgttaaccttgctcttcctaattttgtgtatgtaaccgtgac |
51743022 |
T |
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| Q |
201 |
acatgtatccaccactataggtg |
223 |
Q |
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| T |
51743021 |
acatgtatccaccactataggtg |
51742999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 88 - 147
Target Start/End: Original strand, 138862 - 138921
Alignment:
| Q |
88 |
ttaaaatgtaaacttgcaataatttaaaataataaaataatgagtattaaagagggtgtt |
147 |
Q |
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||||||||||||||| |||| ||||||| ||||||| | | |||||||||||||||||| |
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| T |
138862 |
ttaaaatgtaaacttacaatgatttaaatcaataaaagagtaagtattaaagagggtgtt |
138921 |
T |
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