View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2666_high_1 (Length: 866)

Name: NF2666_high_1
Description: NF2666
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2666_high_1
NF2666_high_1
[»] chr7 (5 HSPs)
chr7 (19-856)||(1715680-1716510)
chr7 (642-824)||(18446568-18446743)
chr7 (648-823)||(2576970-2577148)
chr7 (648-824)||(26389164-26389324)
chr7 (745-821)||(1773526-1773601)
[»] chr5 (3 HSPs)
chr5 (648-823)||(4215223-4215401)
chr5 (739-823)||(37498203-37498286)
chr5 (741-823)||(18587363-18587443)
[»] chr8 (9 HSPs)
chr8 (648-823)||(19472483-19472660)
chr8 (648-823)||(19543408-19543585)
chr8 (648-823)||(19589111-19589288)
chr8 (742-823)||(3788500-3788580)
chr8 (643-825)||(3479030-3479214)
chr8 (648-811)||(3785802-3785968)
chr8 (643-809)||(31909113-31909282)
chr8 (786-823)||(12062900-12062937)
chr8 (742-823)||(35416089-35416168)
[»] chr6 (3 HSPs)
chr6 (670-824)||(33638777-33638934)
chr6 (742-823)||(21146819-21146899)
chr6 (742-816)||(9664639-9664711)
[»] chr4 (2 HSPs)
chr4 (649-820)||(46432433-46432606)
chr4 (742-817)||(55849425-55849499)
[»] chr1 (4 HSPs)
chr1 (708-823)||(12685139-12685256)
chr1 (651-820)||(16385556-16385728)
chr1 (740-824)||(27356018-27356101)
chr1 (648-686)||(12685090-12685129)
[»] scaffold0016 (1 HSPs)
scaffold0016 (648-825)||(48379-48562)
[»] chr3 (4 HSPs)
chr3 (740-823)||(51306418-51306499)
chr3 (742-823)||(51308882-51308961)
chr3 (751-823)||(20868777-20868847)
chr3 (742-816)||(27462198-27462270)
[»] chr2 (2 HSPs)
chr2 (742-824)||(26608007-26608086)
chr2 (649-824)||(20509106-20509283)


Alignment Details
Target: chr7 (Bit Score: 613; Significance: 0; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 613; E-Value: 0
Query Start/End: Original strand, 19 - 856
Target Start/End: Complemental strand, 1716510 - 1715680
Alignment:
Q  19 attctcgcatccaattataacataatctaacaattcattaactacgtgtgtgagctgtgttaccattgaannnnnnn-gtatacaaattgatattcaaat 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        || |||||||||||||||||||    
T  1716510 attctcgcatccaattataacataatctaacaattcattaactacgtgtgtgagctgtgttaccattgaattttttttgtgtacaaattgatattcaaat 1716411  T
Q  118 aagatttctgattatatt-aattgcagttttcttttctacggttnnnnnnng-gggggagaaatgtttcatttcaatgcaactatacaaagtctaactct 215  Q
    |||||||||||||||||| |||||||||||||||||||||||||         |||||||||||||||||||||||||||||||||||||||||||||||    
T  1716410 aagatttctgattatatttaattgcagttttcttttctacggttaaaaaaaaagggggagaaatgtttcatttcaatgcaactatacaaagtctaactct 1716311  T
Q  216 cacactcttttatacctccattgttgtgttta--caagaacaatatataaatggattaattattgagctactattggacccacacaacaacctttacatt 313  Q
    |||||||||||||||||||||||||||| |||  |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  1716310 cacactcttttatacctccattgttgtgattatacaagaacaatatataaatggcttaattattgagctactattggacccacacaacaacctttacatt 1716211  T
Q  314 gacaagtgggtgattattagcagcatgtgtttaatcatgctcaaagtgtcgacaaacaacttgtgatgatgaagcatccactcataagtcatgacataca 413  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1716210 gacaagtgggtgattattagcagcatgtgtttaatcatgctcaaagtgtcgacaaacaacttgtgatgatgaagcatccactcataagtcatgacataca 1716111  T
Q  414 agattgtctgtttcatggttaaattcattctttctcagagtaatttgttggtgtgattcatatttaagattgttttccacgtgacatagacatattaaaa 513  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1716110 agattgtctgtttcatggttaaattcattctttctcagagtaatttgttggtgtgattcatatttaagattgttttccacgtgacatagacatattaaaa 1716011  T
Q  514 tatgatgcaaataaagtgacagcttagatggtaaatttgaacctatttgattttacaggtgacacaaatataatgcagaaaattataaccctcaaatgaa 613  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1716010 tatgatgcaaataaagtgacagcttagatggtaaatttgaacctatttgattttacaggtgacacaaatataatgcagaaaattataaccctcaaatgaa 1715911  T
Q  614 ctgaaattctannnnnnnnaaaagaactaatgtagaaatatagttagttatactcatttagagttagttagtgcattagttcggtcactatatgagtcac 713  Q
    |||||||||||        |||||||||||||| |||||||||||||||||||||||||||||||||| ||||| |   ||| |||||||||| ||| ||    
T  1715910 ctgaaattcta-tttttttaaaagaactaatgttgaaatatagttagttatactcatttagagttagtcagtgcgt---ttcagtcactatataagttac 1715815  T
Q  714 tagttgactcttttgtatctgtctt----cttttgtatcatttcaactattatcaatacaataactttctaaagctttttctctccattttcatggatgc 809  Q
    |||||||||||||||||||| ||||    ||||| ||||||||||||||||||||||||||||||            ||||||||||||||||||||||     
T  1715814 tagttgactcttttgtatctctcttttcacttttatatcatttcaactattatcaatacaataac------------tttctctccattttcatggatgt 1715727  T
Q  810 catgtttctcaacaactaacaaaaatataaacatgaattagcctatg 856  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||    
T  1715726 catgtttctcaacaactaacaaaaatataaacatgaattagcttatg 1715680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 90; E-Value: 5e-43
Query Start/End: Original strand, 642 - 824
Target Start/End: Original strand, 18446568 - 18446743
Alignment:
Q  642 aatgtagaaatatagttagttatactcattt-agagttagttagtgcattagttcggtcactatatgagtcactagttgactcttttgtatctgtctt-- 738  Q
    ||||| ||||||||||||||||||||||||| |||||||||||||||| |||||| |||||||||| ||||||||||||| || ||||||||| ||||      
T  18446568 aatgttgaaatatagttagttatactcattttagagttagttagtgcactagttcagtcactatataagtcactagttgattc-tttgtatctttctttc 18446666  T
Q  739 -cttttgtatcatttcaactattatcaatacaataactttctaaagctttttctctccattttcatggatgccatgtttctcaacaa 824  Q
     |||||||||||||||||||||||||||||||||          ||||||||||||| ||||||||||||||||||||| |||||||    
T  18446667 acttttgtatcatttcaactattatcaatacaat----------agctttttctctctattttcatggatgccatgtttttcaacaa 18446743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 648 - 823
Target Start/End: Original strand, 2576970 - 2577148
Alignment:
Q  648 gaaatatagttagttatactcattt-agagttagttagtgcattagttcggtcactatatgagtcactagttgactcttttgtatctgtcttc---tttt 743  Q
    ||||||||| |||| |||||||||| |||||||||||| | | ||||   |||||||||| |||||| ||||||||| ||||||||  | ||    | ||    
T  2576970 gaaatatagatagtgatactcattttagagttagttagggtactagtatagtcactatataagtcacaagttgactcatttgtatcactttttcattctt 2577069  T
Q  744 gtatcatttcaactattatcaatacaataactttctaaagctttttctctccattttcatggatgccatgtttctcaaca 823  Q
    |||||||||||||||||||||||||||||| ||||| |||||| ||||||| ||||||||||||||||||||||||||||    
T  2577070 gtatcatttcaactattatcaatacaataattttct-aagcttcttctctctattttcatggatgccatgtttctcaaca 2577148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 648 - 824
Target Start/End: Original strand, 26389164 - 26389324
Alignment:
Q  648 gaaatatagttagttatactcattt-agagttagttagtgcattagttcggtcactatatgagtcactagttgactcttttgtatctgtcttcttttgta 746  Q
    ||||||||| ||||||||||||||| |||||||||||||| | |||||  |||||||||| |||||| ||||||||||||||||||| |               
T  26389164 gaaatataggtagttatactcattttagagttagttagtgtactagtttagtcactatataagtcacaagttgactcttttgtatctct----------- 26389252  T
Q  747 tcatttcaactattatcaatacaataactttctaaagctttttctctccattttcatggatgccatgtttctcaacaa 824  Q
         |||||||||||||||||||||| ||||||| | |||||||||| |||||||||||||||||||||||||||||    
T  26389253 -----tcaactattatcaatacaataattttctaa-gttttttctctctattttcatggatgccatgtttctcaacaa 26389324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 745 - 821
Target Start/End: Complemental strand, 1773601 - 1773526
Alignment:
Q  745 tatcatttcaactattatcaatacaataactttctaaagctttttctctccattttcatggatgccatgtttctcaa 821  Q
    ||||||||| ||||||||||||||||||||||| | |||||||| ||||| ||||| ||||||| ||||||||||||    
T  1773601 tatcatttctactattatcaatacaataactttgt-aagcttttactctctatttttatggatgtcatgtttctcaa 1773526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 127; Significance: 4e-65; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 127; E-Value: 4e-65
Query Start/End: Original strand, 648 - 823
Target Start/End: Original strand, 4215223 - 4215401
Alignment:
Q  648 gaaatatagttagttatactcatttagagttagttagtgcattagttcggtcactatatgagtcactagttgactcttttgtatctgtctt----ctttt 743  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||  |||||||||| ||||| |||||||||||||||||||| ||||    |||||    
T  4215223 gaaatatagttagttatactcatttagagttagttagtgcactagttgagtcactatataagtcattagttgactcttttgtatctctcttttcactttt 4215322  T
Q  744 gtatcatttcaactattatcaatacaataactttctaaagctttttctctccattttcatggatgccatgtttctcaaca 823  Q
     ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  4215323 atatcatttcaactattatcaatacaataactttct-aagctttttctctccattttcatggatgccatgtttctcaaca 4215401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 739 - 823
Target Start/End: Complemental strand, 37498286 - 37498203
Alignment:
Q  739 cttttgtatcatttcaactattatcaatacaataactttctaaagctttttctctccattttcatggatgccatgtttctcaaca 823  Q
    ||||| ||||||||||||||| |||||||||||||  |||||| | |||||||||||||||||||||||||||| ||||||||||    
T  37498286 cttttatatcatttcaactatcatcaatacaataatcttctaa-gttttttctctccattttcatggatgccatatttctcaaca 37498203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 741 - 823
Target Start/End: Complemental strand, 18587443 - 18587363
Alignment:
Q  741 tttgtatcatttcaactattatcaatacaataactttctaaagctttttctctccattttcatggatgccatgtttctcaaca 823  Q
    |||||||||||| |||||| ||||||| || |  ||||||| | |||||||||| |||| |||||||||||||||||||||||    
T  18587443 tttgtatcattttaactatcatcaatataa-atttttctaa-gttttttctctctatttccatggatgccatgtttctcaaca 18587363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 75; Significance: 4e-34; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 648 - 823
Target Start/End: Complemental strand, 19472660 - 19472483
Alignment:
Q  648 gaaatatagttagttatactcattt-agagttagtta-gtgcattagttcggtcactatatgagtcactagttgactcttttgtatctgtctt-cttttg 744  Q
    ||||||||| |||| |||||||||| ||||||||||| | | | ||||   |||||||||| |||||| |||||||||||||||| || | |  ||||||    
T  19472660 gaaatatagatagtaatactcattttagagttagttaagggtactagtgtagtcactatatcagtcacaagttgactcttttgtaactctttcacttttg 19472561  T
Q  745 tatcatttcaactattatcaatacaataactttctaaagctttttctctccattttcatggatgccatgtttctcaaca 823  Q
    |||||||||||||||| |||||| ||||| ||||| |||||||||||||| ||||||||||||||||||||||||||||    
T  19472560 tatcatttcaactattttcaatataataa-tttcttaagctttttctctctattttcatggatgccatgtttctcaaca 19472483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 648 - 823
Target Start/End: Complemental strand, 19543585 - 19543408
Alignment:
Q  648 gaaatatagttagttatactcattt-agagttagtta-gtgcattagttcggtcactatatgagtcactagttgactcttttgtatctgtctt-cttttg 744  Q
    ||||||||| |||| |||||||||| ||||||||||| | | | ||||   |||||||||| |||||| |||||||||||||||| || | |  ||||||    
T  19543585 gaaatatagatagtaatactcattttagagttagttaagggtactagtgtagtcactatatcagtcacaagttgactcttttgtaactctttcacttttg 19543486  T
Q  745 tatcatttcaactattatcaatacaataactttctaaagctttttctctccattttcatggatgccatgtttctcaaca 823  Q
    |||||||||||||||| |||||| ||||| ||||| |||||||||||||| ||||||||||||||||||||||||||||    
T  19543485 tatcatttcaactattttcaatataataa-tttcttaagctttttctctctattttcatggatgccatgtttctcaaca 19543408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 648 - 823
Target Start/End: Original strand, 19589111 - 19589288
Alignment:
Q  648 gaaatatagttagttatactcattt-agagttagtta-gtgcattagttcggtcactatatgagtcactagttgactcttttgtatctgtctt-cttttg 744  Q
    ||||||||| |||| |||||||||| ||||||||||| | | | ||||   |||||||||| |||||| |||||||||||||||| || | |  ||||||    
T  19589111 gaaatatagatagtaatactcattttagagttagttaagggtactagtgtagtcactatatcagtcacaagttgactcttttgtaactctttcacttttg 19589210  T
Q  745 tatcatttcaactattatcaatacaataactttctaaagctttttctctccattttcatggatgccatgtttctcaaca 823  Q
    |||||||||||||||| |||||| ||||| ||||| |||||||||||||| ||||||||||||||||||||||||||||    
T  19589211 tatcatttcaactattttcaatataataa-tttcttaagctttttctctctattttcatggatgccatgtttctcaaca 19589288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 742 - 823
Target Start/End: Complemental strand, 3788580 - 3788500
Alignment:
Q  742 ttgtatcatttcaactattatcaatacaataactttctaaagctttttctctccattttcatggatgccatgtttctcaaca 823  Q
    |||||||||||||||||||||||||||||||| |||||||| ||| ||||||| ||||||||||||||||||||||||||||    
T  3788580 ttgtatcatttcaactattatcaatacaataattttctaaa-cttcttctctctattttcatggatgccatgtttctcaaca 3788500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 643 - 825
Target Start/End: Original strand, 3479030 - 3479214
Alignment:
Q  643 atgtagaaatatagttagttatactcattt-agagttagttagtgcattagttcggtcactatatgagtcactagttgactcttttgtatctgtctt--- 738  Q
    |||| ||||||||| ||||||||||||||| |||||||||||| | |||||||  ||| ||| || |||||| ||||||||| |||||| |  ||||       
T  3479030 atgttgaaatatagatagttatactcattttagagttagttagggtattagtttagtccctacataagtcacaagttgactcatttgtaccgctctttca 3479129  T
Q  739 cttttgtatcatttcaactattatcaatacaataactttctaaagctttttctctccattttcatggatgccatgtttctcaacaac 825  Q
    || ||| ||| |||||||||||||||||||| ||| ||| |||   ||||| |||| ||||||||||||| ||||||||||||||||    
T  3479130 ctgttgcatcttttcaactattatcaatacagtaattttttaa--gtttttttctctattttcatggatgtcatgtttctcaacaac 3479214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 648 - 811
Target Start/End: Complemental strand, 3785968 - 3785802
Alignment:
Q  648 gaaatatagttagttatactcattt-agagttagttagtgcattagttcggtcactatatgagtcactagttgactcttttgtatc--tgtcttctt-tt 743  Q
    ||||||||| |||| |||||||||| |||||||||||| | | || |   |||||||||| |||||| ||||||||| ||||||||  | | || || ||    
T  3785968 gaaatatagatagtgatactcattttagagttagttagggtactactatagtcactatataagtcacaagttgactcatttgtatcacttttttattctt 3785869  T
Q  744 gtatcatttcaactattatcaatacaataactttctaaagctttttctctccattttcatggatgcca 811  Q
    |||||||||||||||||||||||||||||| ||||  |||||| ||||||| ||||||||||||||||    
T  3785868 gtatcatttcaactattatcaatacaataa-tttcctaagcttcttctctctattttcatggatgcca 3785802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 643 - 809
Target Start/End: Complemental strand, 31909282 - 31909113
Alignment:
Q  643 atgtagaaatatagttagttatactcattt-agagttagttagtgcattagttcggtcactatatgagtcactagttgactcttttgtatctgtct---t 738  Q
    |||| ||||||||| |||| |||||||||| ||||| |||||  | | |||||  |||||||||| |||||| ||||||||| |||||| || |||   |    
T  31909282 atgttgaaatatagatagtaatactcattttagagtaagttaaggtactagtttagtcactatataagtcacaagttgactcatttgtacctctctcttt 31909183  T
Q  739 c-ttttgtatcatttcaactattatcaatacaataactttctaaagctttttctctccattttcatggatgc 809  Q
    | ||||||||| |||||||||| |||||||||||| |||| | |||| ||||||||| ||||||||||||||    
T  31909182 cattttgtatcttttcaactatcatcaatacaatagctttgt-aagc-ttttctctctattttcatggatgc 31909113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 786 - 823
Target Start/End: Original strand, 12062900 - 12062937
Alignment:
Q  786 ttttctctccattttcatggatgccatgtttctcaaca 823  Q
    ||||||||| ||||||||||||||||||||||||||||    
T  12062900 ttttctctctattttcatggatgccatgtttctcaaca 12062937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 742 - 823
Target Start/End: Complemental strand, 35416168 - 35416089
Alignment:
Q  742 ttgtatcatttcaactattatcaatacaataactttctaaagctttttctctccattttcatggatgccatgtttctcaaca 823  Q
    |||||||||||||||||  || |||||||||  ||| | |||||||| ||||| ||||| ||||||||||||||||| ||||    
T  35416168 ttgtatcatttcaactaccattaatacaatagtttt-tcaagctttt-ctctctatttttatggatgccatgtttcttaaca 35416089  T

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Target: chr6 (Bit Score: 66; Significance: 1e-28; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 670 - 824
Target Start/End: Complemental strand, 33638934 - 33638777
Alignment:
Q  670 tttagagttagttagtgcattagttcggtcactatatgagtcactagttgactcttttgtatctgtctt----cttttgtatcatttcaactattatcaa 765  Q
    ||||||||||||||||| |||||||   ||  ||||| |||||  ||||||||||||||||||| ||||    ||||||||||  ||||| |||||||||    
T  33638934 tttagagttagttagtgtattagtttaatcgttatataagtcataagttgactcttttgtatctctcttttaacttttgtatctcttcaattattatcaa 33638835  T
Q  766 tacaataactttctaaagctttttctctccattttcatggatgccatgtttctcaacaa 824  Q
     ||||||| |||| |||| |||||||||| |||||||||||||||||||||||||||||    
T  33638834 gacaataattttc-aaagttttttctctctattttcatggatgccatgtttctcaacaa 33638777  T

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Target: chr6; HSP #2
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 742 - 823
Target Start/End: Complemental strand, 21146899 - 21146819
Alignment:
Q  742 ttgtatcatttcaactattatcaatacaataactttctaaagctttttctctccattttcatggatgccatgtttctcaaca 823  Q
    ||||||||||||||||||| |||||||||||| ||||| ||| |||||||||| ||||||||||||| ||||||||| ||||    
T  21146899 ttgtatcatttcaactattttcaatacaataattttct-aagttttttctctctattttcatggatgacatgtttcttaaca 21146819  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 742 - 816
Target Start/End: Complemental strand, 9664711 - 9664639
Alignment:
Q  742 ttgtatcatttcaactattatcaatacaataactttctaaagctttttctctccattttcatggatgccatgttt 816  Q
    |||||||||||||||||| ||||||||||| | ||| | |||| ||||||||| || | ||||||||||||||||    
T  9664711 ttgtatcatttcaactataatcaatacaat-agtttttcaagc-ttttctctctatatccatggatgccatgttt 9664639  T

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Target: chr4 (Bit Score: 66; Significance: 1e-28; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 649 - 820
Target Start/End: Original strand, 46432433 - 46432606
Alignment:
Q  649 aaatatagttagttatactcattt-agagttagttagtgcattagttcggtcactatatgagtcactagttgactcttttgtatctgtctt---cttttg 744  Q
    |||| ||||||||||||||||||| |||||||||||||||| || ||  |||||  ||  |||||||||||||||||||| ||||  ||||   ||||||    
T  46432433 aaatgtagttagttatactcattttagagttagttagtgcactaatttagtcaccgtaaaagtcactagttgactcttttatatccctctttcacttttg 46432532  T
Q  745 tatcatttcaactattatcaatacaataactttctaaagctttttctctccattttcatggatgccatgtttctca 820  Q
    ||||||||  ||||||||||||||||||| ||| | |||||||| ||||| ||||||||||||| |||||||||||    
T  46432533 tatcatttttactattatcaatacaataattttgt-aagcttttcctctctattttcatggatg-catgtttctca 46432606  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 742 - 817
Target Start/End: Complemental strand, 55849499 - 55849425
Alignment:
Q  742 ttgtatcatttcaactattatcaatacaataactttctaaagctttttctctccattttcatggatgccatgtttc 817  Q
    |||||||||||||||||| ||||||||||||  ||||  |||| ||||||||| || | |||||||||||||||||    
T  55849499 ttgtatcatttcaactatcatcaatacaatagttttcccaagc-ttttctctctatatccatggatgccatgtttc 55849425  T

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Target: chr1 (Bit Score: 61; Significance: 1e-25; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 708 - 823
Target Start/End: Original strand, 12685139 - 12685256
Alignment:
Q  708 agtcactagttgactcttttgtatctgtctt---cttttgtatcatttcaactattatcaatacaataactttctaaagctttttctctccattttcatg 804  Q
    |||||||||||||||||||||||||| ||||   ||||| ||||||||  ||||||||||||| ||||||||||| |||| ||| ||||| ||||| |||    
T  12685139 agtcactagttgactcttttgtatctctctttaacttttatatcattttcactattatcaatataataactttct-aagcctttcctctctatttttatg 12685237  T
Q  805 gatgccatgtttctcaaca 823  Q
    |||||||||||||||||||    
T  12685238 gatgccatgtttctcaaca 12685256  T

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Target: chr1; HSP #2
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 651 - 820
Target Start/End: Original strand, 16385556 - 16385728
Alignment:
Q  651 atatagttagttatactcattt-agagttagttagtgcattagttcggtcactatatgagtcactagttgactcttttgtatctgtcttc---ttttgta 746  Q
    |||||| ||||||||||||||| |||||||||||| | | |||||  |||||| ||| |||||| ||||||||| ||||||  | ||||    |||||||    
T  16385556 atatagatagttatactcattttagagttagttagggtactagtttagtcactgtataagtcacaagttgactcatttgtacatctctttcatttttgta 16385655  T
Q  747 tcatttcaactattatcaatacaataactttctaaagctttttctctccattttcatggatgccatgtttctca 820  Q
    ||||||   |||| ||||||||||||||||| ||| ||||||||| || |||||||||||||||||||||||||    
T  16385656 tcattttccctataatcaatacaataactttgtaa-gctttttctttctattttcatggatgccatgtttctca 16385728  T

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Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 740 - 824
Target Start/End: Complemental strand, 27356101 - 27356018
Alignment:
Q  740 ttttgtatcatttcaactattatcaatacaataactttctaaagctttttctctccattttcatggatgccatgtttctcaacaa 824  Q
    |||||||||||||  ||||| |||||||||||||| || ||| | ||||||||||  ||||||||| | ||||||||||||||||    
T  27356101 ttttgtatcattttcactatcatcaatacaataaccttttaa-gttttttctctcttttttcatgggtaccatgtttctcaacaa 27356018  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 648 - 686
Target Start/End: Original strand, 12685090 - 12685129
Alignment:
Q  648 gaaatatagttagttatactca-tttagagttagttagtg 686  Q
    |||||||||||||||||||||| |||||||||||||||||    
T  12685090 gaaatatagttagttatactcattttagagttagttagtg 12685129  T

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Target: scaffold0016 (Bit Score: 56; Significance: 9e-23; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 648 - 825
Target Start/End: Original strand, 48379 - 48562
Alignment:
Q  648 gaaatatagttagttatactcattt-agagttagtta-gtgcattagttcggtcactatatgagtcactagttgactcttttgtatctgtcttct----t 741  Q
    ||||||||| ||||||||||||||| ||||||||||| | | ||||||    ||||||||| |||||| |||||| ||||||||| || |||| |    |    
T  48379 gaaatataggtagttatactcattttagagttagttaagggtattagtgtattcactatataagtcacaagttgattcttttgtaactatcttttcaatt 48478  T
Q  742 ttgtatcatttcaactattatcaatacaataactttctaaagcttt-ttctctccattttcatggatgccatgtttctcaacaac 825  Q
    |||||||  |||||| |||||||||||||||| ||||| ||||||| ||||||| | ||||||||||| ||||||||||||||||    
T  48479 ttgtatcccttcaacaattatcaatacaataattttct-aagctttcttctctctactttcatggatgtcatgtttctcaacaac 48562  T

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Target: chr3 (Bit Score: 56; Significance: 9e-23; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 740 - 823
Target Start/End: Original strand, 51306418 - 51306499
Alignment:
Q  740 ttttgtatcatttcaactattatcaatacaataactttctaaagctttttctctccattttcatggatgccatgtttctcaaca 823  Q
    ||||||||||||| |||||||||||||||||||| ||||||| |||||||||||| ||||||||||||| ||||||||||||||    
T  51306418 ttttgtatcattttaactattatcaatacaataa-tttctaa-gctttttctctctattttcatggatgtcatgtttctcaaca 51306499  T

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Target: chr3; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 742 - 823
Target Start/End: Original strand, 51308882 - 51308961
Alignment:
Q  742 ttgtatcatttcaactattatcaatacaataactttctaaagctttttctctccattttcatggatgccatgtttctcaaca 823  Q
    |||||||||||||||||||||||||||||||| ||| ||| |||||||||||| ||||||||||||| ||||||||||||||    
T  51308882 ttgtatcatttcaactattatcaatacaataa-tttataa-gctttttctctctattttcatggatgtcatgtttctcaaca 51308961  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 751 - 823
Target Start/End: Original strand, 20868777 - 20868847
Alignment:
Q  751 ttcaactattatcaatacaataactttctaaagctttttctctccattttcatggatgccatgtttctcaaca 823  Q
    ||||||||| ||||||||||||  ||||||| |||||| |||||  ||||||||||||||||||||| |||||    
T  20868777 ttcaactatcatcaatacaatagttttctaa-gctttt-ctctctcttttcatggatgccatgtttcccaaca 20868847  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 742 - 816
Target Start/End: Original strand, 27462198 - 27462270
Alignment:
Q  742 ttgtatcatttcaactattatcaatacaataactttctaaagctttttctctccattttcatggatgccatgttt 816  Q
    |||||||||||||||||| ||||||||||||  ||||  |||| ||||||||| || | ||||||||||||||||    
T  27462198 ttgtatcatttcaactataatcaatacaatagttttc-caagc-ttttctctctatatccatggatgccatgttt 27462270  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 742 - 824
Target Start/End: Complemental strand, 26608086 - 26608007
Alignment:
Q  742 ttgtatcattt-caactattatcaatacaataactttctaaagctttttctctccattttcatggatgccatgtttctcaacaa 824  Q
    ||||||||||| ||||||| ||||||||||||  ||||||| |||||| ||||| ||||||||||||| ||||||||| |||||    
T  26608086 ttgtatcattttcaactatcatcaatacaata--tttctaa-gctttt-ctctctattttcatggatgtcatgtttcttaacaa 26608007  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 649 - 824
Target Start/End: Complemental strand, 20509283 - 20509106
Alignment:
Q  649 aaatatagttagttatactcattt-agagttagttagtgc-attagttcggtcactatatgagtcactagttgactcttttgtatctgtcttc---tttt 743  Q
    |||||||  ||||||||||||||| |||||||||||| |  | |||||  |||| ||||| ||| || ||||||||| ||| ||||| ||||    ||||    
T  20509283 aaatataagtagttatactcattttagagttagttaggggtactagtttagtcaatatataagttacaagttgactcatttatatctctctttcattttt 20509184  T
Q  744 gtatcatttcaactattatcaatacaataactttctaaagctttttctctccattttcatggatgccatgtttctcaacaa 824  Q
    ||||  ||||||||| |||| ||| ||||| |||| |  | | |||||||| ||||||||||||| |||||||||||||||    
T  20509183 gtat--tttcaactagtatcgatataataattttcgac-gttgtttctctctattttcatggatgtcatgtttctcaacaa 20509106  T

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