View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2666_high_14 (Length: 222)
Name: NF2666_high_14
Description: NF2666
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2666_high_14 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 184; Significance: 1e-100; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 184; E-Value: 1e-100
Query Start/End: Original strand, 7 - 217
Target Start/End: Original strand, 5357908 - 5358115
Alignment:
| Q |
7 |
atatctcaagcattcataaagtcgaagggtaataaactttacacacatagatgaaaagtaataatttaataaactcattcagagagaaaatcataataca |
106 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5357908 |
atatctcaagcattcataaagtcgaagggtaataaactttacacaca--gatgaaaagtaataatttaataaactcattcagagagaaaatcataataca |
5358005 |
T |
|
| Q |
107 |
ataattgccatttatatctcttctcatctctaatagaagagaaattagctaatcgcgatgttttacagaaacataaatgagcaatgtaaaaattacacgt |
206 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||| |
|
|
| T |
5358006 |
ataattgccatttatttctcttctcatctctaatagaagagaaattagctaatcgcgatgttttacag-aacataaatgagcattgtaaaaattacacgt |
5358104 |
T |
|
| Q |
207 |
aaaaatctgtg |
217 |
Q |
| |
|
||||||||||| |
|
|
| T |
5358105 |
aaaaatctgtg |
5358115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University