View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2666_high_2 (Length: 864)

Name: NF2666_high_2
Description: NF2666
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2666_high_2
NF2666_high_2
[»] chr1 (2 HSPs)
chr1 (30-861)||(51108672-51109493)
chr1 (367-452)||(51116634-51116719)


Alignment Details
Target: chr1 (Bit Score: 773; Significance: 0; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 773; E-Value: 0
Query Start/End: Original strand, 30 - 861
Target Start/End: Complemental strand, 51109493 - 51108672
Alignment:
Q  30 cactataggtgttgtaaagaattattttgctggtaaacaaagaaaagaaagtacttgtaatttcaatattgatcacaagtgaaaaagaaggttggacaca 129  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51109493 cactataggtgttgtaaagaattattttgctcgtaaacaaagaaaagaaagtacttgtaatttcaatattgatcacaagtgaaaaagaaggttggacaca 51109394  T
Q  130 gtcacagacgcaagccaaaaaagaaggctggaaagtggaaacattcacactcactaatgtgtatttttagaagttgcacaactaactaataaacaaacac 229  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51109393 gtcacagacgcaagccaaaaaagaaggctggaaagtggaaacattcacactcactaatgtgtatttttagaagttgcacaactaactaataaacaaacac 51109294  T
Q  230 caaacctcagttacggttaattcaaccgttgaggttatgtcatttctgcatcgaatcggaaactttaggctgaataccgagaggacatttcaatttcgca 329  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  51109293 caaacctcagttacggttaattcaaccgttgaggttatgtcatttctgcatcgaatctgaaactttaggctgaataccgagaggacatttcaatttcgca 51109194  T
Q  330 gatgttacactcacctgcttcatgcttctttctcaaattctattcccaaacctaaaactctccctactgttatgccatattcgcattcgcttttccataa 429  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51109193 gatgttacactcacctgcttcatgcttctttctcaaattctattcccgaacctaaaactctccctactgttatgccatattcgcattcgcttttccataa 51109094  T
Q  430 tactagacccataaatgtttctccaattgttttaaacagcgtgaggtgttatgctgcacccgttcaggtaatttacaaacttctagtagttgtaactagg 529  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51109093 tactagacccataaatgtttctccaattgttttaaacagcgtgaggtgttatgctgcacccgttcaggtaatttacaaacttctagtagttgtaactagg 51108994  T
Q  530 gcttaattatgaacaaagaaaccttaatgcatgaatgttccttagaaacaatctcttttcaacactatcaaaattgtcatctttgctattgggaatatgt 629  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||          |||||||||||||||||||||||||||||||||||||||||    
T  51108993 gcttaattatgaacaaagaaaccttaatgcatgaatgttccttagaaac----------caacactatcaaaattgtcatctttgctattgggaatatgt 51108904  T
Q  630 tccatggtgattttggtattgtgacaatctgcgtctcttggttttattcatgtcgcgcattttgtgtttgtgccttcagtaagcttgagcattatccttc 729  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51108903 tgcatggtgattttggtattgtgacaatctgcgtctcttggttttattcatgtcgcgcattttgtgtttgtgccttcagtaagcttgagcattatccttc 51108804  T
Q  730 acgttatgtgtttggtagctttgctatgtattggtggtgttggttgatgatgtttttctgtgttttctctttcatttcagtttcaaccaaagcccaagaa 829  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  51108803 acgttatgtgtttggtagctttgctatgtattggtggtgttggttgatgatgtttttctgtgttttctctttcatttcagtttcaaccaaagcacaagaa 51108704  T
Q  830 tgaggatcatgacacagaggagccacagttga 861  Q
    |||||||||||||||||| |||||||||||||    
T  51108703 tgaggatcatgacacagacgagccacagttga 51108672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 367 - 452
Target Start/End: Complemental strand, 51116719 - 51116634
Alignment:
Q  367 ttctattcccaaacctaaaactctccctactgttatgccatattcgcattcgcttttccataatactagacccataaatgtttctc 452  Q
    ||||| |||||| ||||||||||||||||| |||||||||||||| |||||||||||||||| |||||||||||||||||||||||    
T  51116719 ttctactcccaagcctaaaactctccctacggttatgccatattcacattcgcttttccatagtactagacccataaatgtttctc 51116634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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