View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2666_high_3 (Length: 850)
Name: NF2666_high_3
Description: NF2666
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2666_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 393; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 197 - 833
Target Start/End: Complemental strand, 31768674 - 31768039
Alignment:
| Q |
197 |
caaaataaacattgtattaaactagccaattgtcagactgtacaaaatggaaaataatttcaagttaaaaatacgtcaaggggaactggattgggtaatc |
296 |
Q |
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| T |
31768674 |
caaaataaacattgtattaaacaagccaattgtc-gattctacaaaatggaaaataatttcaagtttaaagtacgtcaagggcgactggattgggtaatc |
31768576 |
T |
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| Q |
297 |
accaacaacaggtcctcaagttctttcttagttgatactgctaactcatagtcagcctgaagattccttagagttttcgcagtctgattcacctcgtcac |
396 |
Q |
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| T |
31768575 |
accaacaagagatcctcaagttctttcctagtcaacactgctaactcgtagtcagactgaagattccttagagttttcaccgtctgattcacctcatcac |
31768476 |
T |
|
| Q |
397 |
gaagggcattgatgctgtcgacacgcttcttctccaaattgataaagacatcaataccagtgttggcttcagctaattccgcctcagctaaggtcaattg |
496 |
Q |
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| T |
31768475 |
gaagggcattgatgctgtcgacgcgctttttctctgaattgataaagacagcaatacctgtgttggcttcagctagttccacctcagctaaggccaattg |
31768376 |
T |
|
| Q |
497 |
cttcttgagttggtcaactttctcttcagccttgaccttaattgtctcttgctgttttttgtttactgcaatcttttctttttgttctttgagaggaagg |
596 |
Q |
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| T |
31768375 |
cttcttgagttgctcaactttctcttcagccttgaccttaactgcctcatgctgctttttatttaccgcaatattttctttttgttctttgagaggaagg |
31768276 |
T |
|
| Q |
597 |
agcttcttcaccaagtcgtctttggaattcaccgcttgcttgtaaacaggaagggtagctgttaagagagcattctttgaggcatgaagggatagaaaat |
696 |
Q |
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| T |
31768275 |
agcttctttaccaagtcctctttggaattcaccgcttgctcgtaaacaggaagggtggctgttaagaaagcattcttggaggcatgaagggatagaaagt |
31768176 |
T |
|
| Q |
697 |
tgttgatctgctgaagagtaatttggcttgagagaggcagttggtgctttagaggcttgagttctccaactagcctcctcatctgattgaatgcaaaggt |
796 |
Q |
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| T |
31768175 |
tgttgacctgctcaagtgtactttggcctgagagaggcaaccgttgcttgagaggcttgagtttttcaactagcctcctcatctgatcgaatgcagaggt |
31768076 |
T |
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| Q |
797 |
gtcagcagaagcaacgtccaaaggcttcgacactagt |
833 |
Q |
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| T |
31768075 |
gtcagcagaagcgacatccaatggcttcgacactagt |
31768039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 37 - 100
Target Start/End: Complemental strand, 31768820 - 31768757
Alignment:
| Q |
37 |
gaaagacagtcagagatatcgaacacctgattatttgctgaaagtaaatcagtccatttaagaa |
100 |
Q |
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| T |
31768820 |
gaaagacagacagagacattgaacacctcattatttgctgaaaataaatcagtccatttaagaa |
31768757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 66 - 118
Target Start/End: Original strand, 30452291 - 30452343
Alignment:
| Q |
66 |
attatttgctgaaagtaaatcagtccatttaagaagtgattatactcgaaacc |
118 |
Q |
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| T |
30452291 |
attatttgttgaaagtaaatcagtccatataagtagagattatactagaaacc |
30452343 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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