View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2666_low_10 (Length: 268)
Name: NF2666_low_10
Description: NF2666
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2666_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 216; Significance: 1e-119; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 11 - 247
Target Start/End: Complemental strand, 5357885 - 5357647
Alignment:
| Q |
11 |
aagaatatatgcacattctcttgtagttgctagtgaggttttggaagaagcctccaagaaaattgaagaattatattatatggaaggcattccatataca |
110 |
Q |
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| T |
5357885 |
aagaatatatgcacattctcttgtagttgctagtgaggttttggaagaagcctccaagaaaattgaagaattatattatatggaaggcattgcatataca |
5357786 |
T |
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| Q |
111 |
agtgttctagcatctcttatgtgtgctatggtcggtacttgtcctgatatagcatatgcagtgagtttagtatccagatttac--aaaaccaactatatt |
208 |
Q |
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| T |
5357785 |
agtgttttagcatctcttatgtgtgctatggtcagtacttgtcctgatatagcatatgcagtgagtttagtatccagatttaccaaaaaccaactatatt |
5357686 |
T |
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| Q |
209 |
tttaaggtgcgtcaaagtatctgacccacgtcagtgtct |
247 |
Q |
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| T |
5357685 |
tttaaggtgcgtcaaagtatctgacccacgtcagtgtct |
5357647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 15 - 139
Target Start/End: Complemental strand, 5372614 - 5372487
Alignment:
| Q |
15 |
atatatgcacattctcttgtagttgctagtgaggttttggaagaagcctccaagaaaattgaaga---attatattatatggaaggcattccatatacaa |
111 |
Q |
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||||||||||||||||||||| ||||| |||||||||||||||||| |||||||||| |||||| || ||| ||||||||||| ||||||||||||| |
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| T |
5372614 |
atatatgcacattctcttgtaattgctggtgaggttttggaagaagaatccaagaaaaatgaagaactatgataatatatggaaggtattccatatacaa |
5372515 |
T |
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| Q |
112 |
gtgttctagcatctcttatgtgtgctat |
139 |
Q |
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| T |
5372514 |
gtgttttagcatctcttatgtatgctat |
5372487 |
T |
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