View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2666_low_13 (Length: 235)
Name: NF2666_low_13
Description: NF2666
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2666_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 221; Significance: 1e-122; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 47811246 - 47811466
Alignment:
| Q |
1 |
cttatgtgacaaaaataacgatagaggcgactacataaccggtagtacctaccataacaacctcaaaatcgctttcatatacctcactttcaactcaaaa |
100 |
Q |
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| T |
47811246 |
cttatgtgacaaaaataacgatagaggcgactacataaccggtagtacctaccataacaacctcaaaatcgctttcatatacctcactttcaactcaaaa |
47811345 |
T |
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| Q |
101 |
gttaactacggtttctacaatacaaattacggccaaaacgaggacaaagtaaacctcattggaatatgtagaggagacattaatcctgaagattgtcgca |
200 |
Q |
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| T |
47811346 |
gttaactacggtttctacaatacaaattacggccaaaacgaggacaaagtaaacctcattggaatatgtagaggagacattaatcctgaagattgtcgca |
47811445 |
T |
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| Q |
201 |
aatgtctcgttagttcaaaat |
221 |
Q |
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| T |
47811446 |
aatgtctcgttagttcaaaat |
47811466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 16 - 204
Target Start/End: Original strand, 47781735 - 47781923
Alignment:
| Q |
16 |
taacgatagaggcgactacataaccggtagtacctaccataacaacctcaaaatcgctttcatatacctcactttcaactcaaaagttaactacggtttc |
115 |
Q |
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| T |
47781735 |
taacgatagaggtgactacataaccggtagtacctaccacaacaacctcaaaatcgcttttatctacctcactttcaactcaaaaattgactacggtttc |
47781834 |
T |
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| Q |
116 |
tacaatacaaattacggccaaaacgaggacaaagtaaacctcattggaatatgtagaggagacattaatcctgaagattgtcgcaaatg |
204 |
Q |
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| T |
47781835 |
tacaacaccaactatggccaaaacaatgacaaagtaaacgtcattggaatatgtagaggagacattaatcctcaagactgtcgcaaatg |
47781923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 12 - 204
Target Start/End: Original strand, 47787945 - 47788137
Alignment:
| Q |
12 |
aaaataacgatagaggcgactacataaccggtagtacctaccataacaacctcaaaatcgctttcatatacctcactttcaactcaaaagttaactacgg |
111 |
Q |
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|||||||||||||||| ||||||||||||||||| ||||| | |||||||||||| ||||| |||| ||||||||| |||||||||| || ||||||| |
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| T |
47787945 |
aaaataacgatagaggtaactacataaccggtagtgcctacgacaacaacctcaaattcgctatcatgcacctcacttacaactcaaaaattgactacgg |
47788044 |
T |
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| Q |
112 |
tttctacaatacaaattacggccaaaacgaggacaaagtaaacctcattggaatatgtagaggagacattaatcctgaagattgtcgcaaatg |
204 |
Q |
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| T |
47788045 |
tttctacaacaccaactatggccaaaacaatgacacagtaaacgccattggaatatgtagaggagacattaatcctcaagattgtcgcaaatg |
47788137 |
T |
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