View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2666_low_5 (Length: 357)
Name: NF2666_low_5
Description: NF2666
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2666_low_5 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 1 - 314
Target Start/End: Complemental strand, 42387358 - 42387045
Alignment:
| Q |
1 |
atgaaaagcataactctagaaagagctttcccacacttaacaataacacttcttctccacccacccaaatgagcataatcctcttgttcatcttcacgat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42387358 |
atgaaaagcataactctagaaagagctttcccacacttaacaataacacttcttctccacccacccaaatgagcataatcctcttgttcatcttcacgat |
42387259 |
T |
|
| Q |
101 |
taggaattttaaacagtgtacaaaccctacaaaccacataataaacaaccaaaaccgttacagcaagagtcactctaatcggaagaagagtcacaagcgc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
42387258 |
taggaattttaaacagtgtacaaaccctacaaaccacataataaacaaccaaaaccgttacagcaagaatcactctaatcggaagaagagtcacaagcgc |
42387159 |
T |
|
| Q |
201 |
gaaaccaaggaaaagcttctccttggctcctaactctcctcttcccatcgtcccgtacacatcgttgcgaacatatgcggcgaatttcttctctaggtct |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42387158 |
gaaaccaaggaaaagcttctccttggctcctaactctcctcttcccatcgtcccgtacacatcgttgcgaacatatgcggcgaatttcttctctaggtct |
42387059 |
T |
|
| Q |
301 |
tgtagctcctccgc |
314 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
42387058 |
tgtagctcctccgc |
42387045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 4 - 152
Target Start/End: Complemental strand, 6744011 - 6743863
Alignment:
| Q |
4 |
aaaagcataactctagaaagagctttcccacacttaacaataacacttcttctccacccacccaaatgagcataatcctcttgttcatcttcacgattag |
103 |
Q |
| |
|
||||||| || ||||||||| ||||||||||| |||||||||| |||||||| ||| | | ||||||||||||||||||||||||||| | ||||| |
|
|
| T |
6744011 |
aaaagcacaattctagaaagcattttcccacactgaacaataacaacccttctccaaccaacaacatgagcataatcctcttgttcatcttccctattag |
6743912 |
T |
|
| Q |
104 |
gaattttaaacagtgtacaaaccctacaaaccacataataaacaaccaa |
152 |
Q |
| |
|
||| ||| | |||||||||||||||| || |||||| | |||||| |
|
|
| T |
6743911 |
gaacagaaaaaaccgtacaaaccctacaaatcaaataatacaaaaccaa |
6743863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University