View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2666_low_6 (Length: 354)
Name: NF2666_low_6
Description: NF2666
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2666_low_6 |
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| [»] chr5 (5 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 278; Significance: 1e-155; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 53 - 354
Target Start/End: Original strand, 6399396 - 6399697
Alignment:
| Q |
53 |
aatataatcacttaggcacatttcttgccatttatcatcattcttgtaaactcattcaaatcaataagaccatctccatcaccatcaacccctttcacca |
152 |
Q |
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||||| || ||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
6399396 |
aatatgataacttaggcacatttcttgccattcatcatcatccttgtaaactcattcaaatcaataagaccatctccatcactatcaacccctttcacca |
6399495 |
T |
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| Q |
153 |
ttttcttacaagcactaaggctacaactctctcctaacctcttaaatatttgagacaattcctcagcactaattttcccatcaccatttatatcaaatac |
252 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6399496 |
ttttcttacaagcactaaggctacaactctctcctaacctcttaaatatttgagacaattcctcagcactaattttcccatcaccatttatatcaaatac |
6399595 |
T |
|
| Q |
253 |
ttgaaaagcactcttaatatcttcttcttttatcttactaccctctccattgaacatttccataaactctttaaagtctatgaagccatctttgtcagag |
352 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6399596 |
ttgaaaagcactcttaatatcttcttcttttatcttactaccttctccattgaacatttccataaactctttaaagtctatgaagccatctttgtcagag |
6399695 |
T |
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| Q |
353 |
tc |
354 |
Q |
| |
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|| |
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| T |
6399696 |
tc |
6399697 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 53 - 354
Target Start/End: Complemental strand, 6413106 - 6412805
Alignment:
| Q |
53 |
aatataatcacttaggcacatttcttgccatttatcatcattcttgtaaactcattcaaatcaataagaccatctccatcaccatcaacccctttcacca |
152 |
Q |
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||||| || ||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
6413106 |
aatatgataacttaggcacatttcttgccattcatcatcatccttgtaaactcattcaaatcaataagaccatctccatcactatcaacccctttcacca |
6413007 |
T |
|
| Q |
153 |
ttttcttacaagcactaaggctacaactctctcctaacctcttaaatatttgagacaattcctcagcactaattttcccatcaccatttatatcaaatac |
252 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6413006 |
ttttcttacaagcactaaggctacaactctctcctaacctcttaaatatttgagacaattcctcagcactaattttcccatcaccatttatatcaaatac |
6412907 |
T |
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| Q |
253 |
ttgaaaagcactcttaatatcttcttcttttatcttactaccctctccattgaacatttccataaactctttaaagtctatgaagccatctttgtcagag |
352 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6412906 |
ttgaaaagcactcttaatatcttcttcttttatcttactaccttctccattgaacatttccataaactctttaaagtctatgaagccatctttgtcagag |
6412807 |
T |
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| Q |
353 |
tc |
354 |
Q |
| |
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|| |
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| T |
6412806 |
tc |
6412805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 22 - 354
Target Start/End: Complemental strand, 6410391 - 6410059
Alignment:
| Q |
22 |
taaaccagattattctcctctataccggaataatataatcacttaggcacatttcttgccatttatcatcattcttgtaaactcattcaaatcaataaga |
121 |
Q |
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||||||||||||| |||||| | ||||||| | ||| || ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
6410391 |
taaaccagattatgctcctccaaaccggaaaagtatgatgacttaggcacatttcttgccattcatcatcattcttgtaaactcattcaaatcaataaga |
6410292 |
T |
|
| Q |
122 |
ccatctccatcaccatcaacccctttcaccattttcttacaagcactaaggctacaactctctcctaacctcttaaatatttgagacaattcctcagcac |
221 |
Q |
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||||||||||||||||| || |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6410291 |
ccatctccatcaccatcgacacctttcaccattttcttacaagcactaaggctgcaactctctcctaacctcttaaatatttgagacaattcctcagcac |
6410192 |
T |
|
| Q |
222 |
taattttcccatcaccatttatatcaaatacttgaaaagcactcttaatatcttcttcttttatcttactaccctctccattgaacatttccataaactc |
321 |
Q |
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| ||||||||||| ||||||||||||||||||||||||||||||||||| || ||||||||||||||| | |||||||||||||||||||| ||||| |
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| T |
6410191 |
tgattttcccatctccatttatatcaaatacttgaaaagcactcttaatctcctcttcttttatcttattgttttctccattgaacatttccatgaactc |
6410092 |
T |
|
| Q |
322 |
tttaaagtctatgaagccatctttgtcagagtc |
354 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
6410091 |
tttaaagtctatgaagccatctttgtcagagtc |
6410059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 58 - 229
Target Start/End: Original strand, 6402916 - 6403072
Alignment:
| Q |
58 |
aatcacttaggcacatttcttgccatttatcatcattcttgtaaactcattcaaatcaataagaccatctccatcaccatcaacccctttcaccattttc |
157 |
Q |
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|||||||||| |||||||||||||| | |||||||| |||||||||||||||||||||||||||||||||||||||||||| || ||||||| |
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| T |
6402916 |
aatcacttagacacatttcttgccactcatcatcatccttgtaaactcattcaaatcaataagaccatctccatcaccatcgacacctttca-------- |
6403007 |
T |
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| Q |
158 |
ttacaagcactaaggctacaactctctcctaacctcttaaatatttgagacaattcctcagcactaattttc |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
6403008 |
-------aactaaggctacaactctctcctaacctcttaaatatttgagacaattcatcagcactaattttc |
6403072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 296 - 354
Target Start/End: Original strand, 6405258 - 6405316
Alignment:
| Q |
296 |
tctccattgaacatttccataaactctttaaagtctatgaagccatctttgtcagagtc |
354 |
Q |
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||||||||||||||||||||||||||| ||||||||||||| |||||||||||| |||| |
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| T |
6405258 |
tctccattgaacatttccataaactctctaaagtctatgaatccatctttgtcatagtc |
6405316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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