View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2666_low_8 (Length: 303)
Name: NF2666_low_8
Description: NF2666
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2666_low_8 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 219; Significance: 1e-120; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 18 - 288
Target Start/End: Complemental strand, 28492548 - 28492278
Alignment:
| Q |
18 |
gcgtgaactgtaatttatagggaaataagtatgcatacaatcttatcatttgaatatataaaagtcaacggcatattttccattgtagctatctatctta |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28492548 |
gcgtgaactgtaatttatagggaaataagtatgcatacaaccttgtcatttgagtatataaaagtcaacggcatattttccattgtagctatctatctta |
28492449 |
T |
|
| Q |
118 |
ttccaccatggatgaagaaaagccacttcacatagtaatgtttccatggctagcctttggtcacatgattccatatcttgaattagccaaacttatagca |
217 |
Q |
| |
|
|| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| | ||||||||||||||| |
|
|
| T |
28492448 |
tttcaccatggatgaagaaaaggcacttcacatagtaatgtttccatggctagcctttggtcacatgatcccataccttgaagtggccaaacttatagca |
28492349 |
T |
|
| Q |
218 |
caaaagggtcaccaagtaagttatgtttctacaccaagaaacatacaacgcctccctaaactaccaccaaa |
288 |
Q |
| |
|
||||||||||||||||| || ||||||||||| |||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
28492348 |
caaaagggtcaccaagttagctatgtttctaccccaagaaacatacaacgcctccctcaactaccaccaaa |
28492278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 128 - 289
Target Start/End: Complemental strand, 28495757 - 28495596
Alignment:
| Q |
128 |
gatgaagaaaagccacttcacatagtaatgtttccatggctagcctttggtcacatgattccatatcttgaattagccaaacttatagcacaaaagggtc |
227 |
Q |
| |
|
|||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| |
|
|
| T |
28495757 |
gatgaagaaaaggcacttcatatagtaatgtttccatggctagcctttggtcacatgattccatatcttgaactagccaagcttatagcacaaaagggtc |
28495658 |
T |
|
| Q |
228 |
accaagtaagttatgtttctacaccaagaaacatacaacgcctccctaaactaccaccaaat |
289 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28495657 |
accaagtaagttatgtttctacaccaagaaacatacaacgcctccctaaactaccaccaaat |
28495596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 128 - 289
Target Start/End: Complemental strand, 28508300 - 28508139
Alignment:
| Q |
128 |
gatgaagaaaagccacttcacatagtaatgtttccatggctagcctttggtcacatgattccatatcttgaattagccaaacttatagcacaaaagggtc |
227 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| |
|
|
| T |
28508300 |
gatgaagaaaaggcacttcacatagtaatgtttccatggctagcctttggtcacatgattccatatcttgaactagccaagcttatagcacaaaagggtc |
28508201 |
T |
|
| Q |
228 |
accaagtaagttatgtttctacaccaagaaacatacaacgcctccctaaactaccaccaaat |
289 |
Q |
| |
|
|| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28508200 |
acaaagttagttatgtttctacaccaagaaacatacaacgcctccctaaactaccaccaaat |
28508139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University