View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2668_high_3 (Length: 393)

Name: NF2668_high_3
Description: NF2668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2668_high_3
NF2668_high_3
[»] chr7 (4 HSPs)
chr7 (54-381)||(3753953-3754280)
chr7 (54-376)||(4045963-4046285)
chr7 (120-245)||(46383278-46383404)
chr7 (117-183)||(46383849-46383914)
[»] chr6 (18 HSPs)
chr6 (99-223)||(6457257-6457381)
chr6 (93-245)||(6465195-6465347)
chr6 (93-245)||(6473207-6473359)
chr6 (83-223)||(1831943-1832083)
chr6 (93-193)||(6526286-6526386)
chr6 (117-185)||(6516295-6516363)
chr6 (93-164)||(13035906-13035977)
chr6 (93-244)||(6505343-6505494)
chr6 (113-243)||(6520757-6520887)
chr6 (93-193)||(1839050-1839148)
chr6 (104-241)||(6528059-6528196)
chr6 (105-181)||(6461997-6462073)
chr6 (144-245)||(6523254-6523355)
chr6 (93-141)||(1822310-1822358)
chr6 (105-181)||(6496599-6496675)
chr6 (137-223)||(1827215-1827301)
chr6 (93-142)||(1827157-1827206)
chr6 (275-379)||(6457101-6457205)


Alignment Details
Target: chr7 (Bit Score: 308; Significance: 1e-173; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 54 - 381
Target Start/End: Original strand, 3753953 - 3754280
Alignment:
Q  54 tggggtggattagttactcaacaaggtgttaataattcaggtgttgattttggttttggaatttataatgatcatcattatcatttagggtattttcttt 153  Q
    |||||||||||||||||| ||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  3753953 tggggtggattagttactaaacaaggggttaataattcagttgttgattttggttttggaatttataatgatcatcattatcatttaggttattttcttt 3754052  T
Q  154 atggaattgcagttcttgcaaagattgatccattttggggacaaaagtataaaccacaagcttattcacttttgcaagattttatgaacttgggccaaag 253  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3754053 atggaattgctgttcttgcaaagattgatccattttggggacaaaagtataaaccacaagcttattcacttttgcaagattttatgaacttgggccaaag 3754152  T
Q  254 ggataacaaaaactatccaactttaaggtgttttgattttttcaagttgcattcttgggctgcaggagtgactgaatatgaaaatggaaggaatcaagaa 353  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3754153 ggataacaaaaactatccaactttaaggtgttttgattttttcaagttgcattcttgggctgcaggagtgactgaatatgaaaatggaaggaatcaagaa 3754252  T
Q  354 agttcaagtgaagcagtgaatgcatatt 381  Q
    ||||||||||||||||||||||||||||    
T  3754253 agttcaagtgaagcagtgaatgcatatt 3754280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 54 - 376
Target Start/End: Complemental strand, 4046285 - 4045963
Alignment:
Q  54 tggggtggattagttactcaacaaggtgttaataattcaggtgttgattttggttttggaatttataatgatcatcattatcatttagggtattttcttt 153  Q
    ||||||||||||||||||||||||||  ||||| ||||| ||| |||||||||||||||||| |||||||||||||||||||||||||| ||||||||||    
T  4046285 tggggtggattagttactcaacaagggattaatgattcaagtgctgattttggttttggaatgtataatgatcatcattatcatttaggttattttcttt 4046186  T
Q  154 atggaattgcagttcttgcaaagattgatccattttggggacaaaagtataaaccacaagcttattcacttttgcaagattttatgaacttgggccaaag 253  Q
    ||||||||| |||||||||||| |||||||| | |||||||||||||||||||||||||| |||||||||| || |||||||||||||||||||||||||    
T  4046185 atggaattggagttcttgcaaaaattgatccttcttggggacaaaagtataaaccacaagtttattcacttgtgaaagattttatgaacttgggccaaag 4046086  T
Q  254 ggataacaaaaactatccaactttaaggtgttttgattttttcaagttgcattcttgggctgcaggagtgactgaatatgaaaatggaaggaatcaagaa 353  Q
    |||||||||||| ||||||||||||||||||||||||   | ||||||||||||||||||| | ||  |||| |||| |||| ||||||| |||||||||    
T  4046085 ggataacaaaaattatccaactttaaggtgttttgatccatacaagttgcattcttgggcttcgggtttgaccgaatttgaacatggaagaaatcaagaa 4045986  T
Q  354 agttcaagtgaagcagtgaatgc 376  Q
    ||||| |||||||| ||||||||    
T  4045985 agttctagtgaagctgtgaatgc 4045963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 120 - 245
Target Start/End: Complemental strand, 46383404 - 46383278
Alignment:
Q  120 aatgatcatcattatcatttagggtattttctttatggaattgcagttcttgcaaagattgatccattttggggacaaaagtataaaccac-aagcttat 218  Q
    ||||||||||||||||||||||| |||| ||| ||||||||| |||| || || |||||||||||  |||||||    ||||||||  | | ||||||||    
T  46383404 aatgatcatcattatcatttaggatattctctctatggaattacagtgctcgccaagattgatcctatttggggtaggaagtataagtctcaaagcttat 46383305  T
Q  219 tcacttttgcaagattttatgaacttg 245  Q
    |||||  || ||||| |||||||||||    
T  46383304 tcactcatggaagatattatgaacttg 46383278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 117 - 183
Target Start/End: Complemental strand, 46383914 - 46383849
Alignment:
Q  117 tataatgatcatcattatcatttagggtattttctttatggaattgcagttcttgcaaagattgatc 183  Q
    ||||||||||||||| |||||||||| |||||||| ||||||||||| || ||||| ||||||||||    
T  46383914 tataatgatcatcatcatcatttaggatattttctctatggaattgc-gtgcttgctaagattgatc 46383849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 77; Significance: 1e-35; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 99 - 223
Target Start/End: Complemental strand, 6457381 - 6457257
Alignment:
Q  99 gattttggttttggaatttataatgatcatcattatcatttagggtattttctttatggaattgcagttcttgcaaagattgatccattttggggacaaa 198  Q
    |||||||| || || ||||||||||||||||||||||||||||| || ||||| |||||||||||||| ||||||||||||||||||  |||||||  ||    
T  6457381 gattttgggttcggtatttataatgatcatcattatcatttaggatactttctctatggaattgcagtgcttgcaaagattgatccagcttggggaagaa 6457282  T
Q  199 agtataaaccacaagcttattcact 223  Q
    |||||||||| ||||||||||||||    
T  6457281 agtataaacctcaagcttattcact 6457257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 93 - 245
Target Start/End: Complemental strand, 6465347 - 6465195
Alignment:
Q  93 ggtgttgattttggttttggaatttataatgatcatcattatcatttagggtattttctttatggaattgcagttcttgcaaagattgatccattttggg 192  Q
    |||| ||||||||| || ||| |||||||||||||||||||||||||||| || ||||| ||||||||||| || |||||||||||||||||| ||||||    
T  6465347 ggtgctgattttggattcggagtttataatgatcatcattatcatttaggatactttctctatggaattgctgtgcttgcaaagattgatccaatttggg 6465248  T
Q  193 gacaaaagtataaaccacaagcttattcacttttgcaagattttatgaacttg 245  Q
    |    |||||||| || ||||||||||||||  ||   |||||||||||||||    
T  6465247 gtaggaagtataagcctcaagcttattcactcatggctgattttatgaacttg 6465195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 93 - 245
Target Start/End: Original strand, 6473207 - 6473359
Alignment:
Q  93 ggtgttgattttggttttggaatttataatgatcatcattatcatttagggtattttctttatggaattgcagttcttgcaaagattgatccattttggg 192  Q
    |||| |||||| || || |||||||||||||||||||||||||||||||| || ||||| |||||||||||||| ||||| |||||||||||| ||||||    
T  6473207 ggtgctgatttcgggttcggaatttataatgatcatcattatcatttaggttactttctctatggaattgcagtgcttgctaagattgatccagtttggg 6473306  T
Q  193 gacaaaagtataaaccacaagcttattcacttttgcaagattttatgaacttg 245  Q
    |  | || ||||| || ||||| ||| ||||  || |||||||||||| ||||    
T  6473307 gtaagaaatataagcctcaagcctatgcactcatggaagattttatgaccttg 6473359  T

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Target: chr6; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 83 - 223
Target Start/End: Original strand, 1831943 - 1832083
Alignment:
Q  83 taataattcaggtgttgattttggttttggaatttataatgatcatcattatcatttagggtattttctttatggaattgcagttcttgcaaagattgat 182  Q
    ||||||| | ||||||||||| || ||||||||| |||| || ||||||||||||||||| || ||||| | |||||||||||| |||||||||||||||    
T  1831943 taataatactggtgttgatttcgggtttggaattaataacgaccatcattatcatttaggatactttctctttggaattgcagtgcttgcaaagattgat 1832042  T
Q  183 ccattttggggacaaaagtataaaccacaagcttattcact 223  Q
    ||| |||||||   | ||||||| || ||||| ||||||||    
T  1832043 ccaatttggggtagagagtataagcctcaagcctattcact 1832083  T

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Target: chr6; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 93 - 193
Target Start/End: Complemental strand, 6526386 - 6526286
Alignment:
Q  93 ggtgttgattttggttttggaatttataatgatcatcattatcatttagggtattttctttatggaattgcagttcttgcaaagattgatccattttggg 192  Q
    |||| ||||||||| || ||| |||||||||||||||||||||||||||| || ||||| |||||||||||||| ||||| |||||||||||  ||||||    
T  6526386 ggtgctgattttgggttcggagtttataatgatcatcattatcatttaggatactttctctatggaattgcagtgcttgctaagattgatcctatttggg 6526287  T
Q  193 g 193  Q
    |    
T  6526286 g 6526286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 117 - 185
Target Start/End: Original strand, 6516295 - 6516363
Alignment:
Q  117 tataatgatcatcattatcatttagggtattttctttatggaattgcagttcttgcaaagattgatcca 185  Q
    |||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||  ||||||||||||    
T  6516295 tataatgatcatcattatcaattaggatattttctttatggaattgcagtgcttgttaagattgatcca 6516363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 93 - 164
Target Start/End: Original strand, 13035906 - 13035977
Alignment:
Q  93 ggtgttgattttggttttggaatttataatgatcatcattatcatttagggtattttctttatggaattgca 164  Q
    |||| |||||| || ||||||||||||||||| ||||||||||||||||| || ||||| ||||||||||||    
T  13035906 ggtgctgatttcgggtttggaatttataatgaccatcattatcatttaggttactttctctatggaattgca 13035977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 93 - 244
Target Start/End: Complemental strand, 6505494 - 6505343
Alignment:
Q  93 ggtgttgattttggttttggaatttataatgatcatcattatcatttagggtattttctttatggaattgcagttcttgcaaagattgatccattttggg 192  Q
    |||| |||||| ||||| |||||||| ||||||||||| | ||| ||||| ||||||||||| | ||| ||||| |||| |||||| ||||||   ||||    
T  6505494 ggtggtgatttcggtttcggaatttacaatgatcatcactttcacttaggatattttctttacgcaatagcagtgcttgtaaagatcgatccaacatggg 6505395  T
Q  193 gacaaaagtataaaccacaagcttattcacttttgcaagattttatgaactt 244  Q
    |    || |||||  | ||||| ||||||||| || ||||||||||||||||    
T  6505394 gtaggaaatataaggctcaagcctattcacttgtggaagattttatgaactt 6505343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 113 - 243
Target Start/End: Original strand, 6520757 - 6520887
Alignment:
Q  113 aatttataatgatcatcattatcatttagggtattttctttatggaattgcagttcttgcaaagattgatccattttggggacaaaagtataaaccacaa 212  Q
    ||||||||||| ||| | | |||||||||| ||||| |||||||| ||||| |||||||| ||  |||||||   |||||||  ||||||||| || |||    
T  6520757 aatttataatgctcagcttaatcatttaggatatttcctttatggtattgctgttcttgctaaacttgatcccgattggggaagaaagtataagcctcaa 6520856  T
Q  213 gcttattcacttttgcaagattttatgaact 243  Q
    |||||| ||||  || ||||||| |||||||    
T  6520857 gcttatgcactcatggaagatttcatgaact 6520887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 93 - 193
Target Start/End: Original strand, 1839050 - 1839148
Alignment:
Q  93 ggtgttgattttggttttggaatttataatgatcatcattatcatttagggtattttctttatggaattgcagttcttgcaaagattgatccattttggg 192  Q
    |||| |||||| || |||||||||||| |||| ||||||||||||||||| || ||||| ||  |||||||||| |   |||||||||||||| ||||||    
T  1839050 ggtgctgatttcgggtttggaatttatgatgagcatcattatcatttaggatagtttctctaatgaattgcagtgc--acaaagattgatccaatttggg 1839147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 104 - 241
Target Start/End: Complemental strand, 6528196 - 6528059
Alignment:
Q  104 tggttttggaatttataatgatcatcattatcatttagggtattttctttatggaattgcagttcttgcaaagattgatccattttggggacaaaagtat 203  Q
    ||||||||||||||||||| ||||||||  |  ||| || |||||| |||||| |||||| || ||||| ||||||||||||  ||||||    ||||||    
T  6528196 tggttttggaatttataataatcatcatggtactttgggatattttgtttatgcaattgctgtgcttgctaagattgatccagcttggggtaggaagtat 6528097  T
Q  204 aaaccacaagcttattcacttttgcaagattttatgaa 241  Q
    ||  | ||||| |||||| | ||| |||||||||||||    
T  6528096 aaggctcaagcatattcattattggaagattttatgaa 6528059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 105 - 181
Target Start/End: Original strand, 6461997 - 6462073
Alignment:
Q  105 ggttttggaatttataatgatcatcattatcatttagggtattttctttatggaattgcagttcttgcaaagattga 181  Q
    ||||| |||||||||| |||||| | | |||| || || || |||||||||||||||||||||||| ||||||||||    
T  6461997 ggtttcggaatttatagtgatcaccctgatcacttgggatactttctttatggaattgcagttcttacaaagattga 6462073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 144 - 245
Target Start/End: Complemental strand, 6523355 - 6523254
Alignment:
Q  144 tattttctttatggaattgcagttcttgcaaagattgatccattttggggacaaaagtataaaccacaagcttattcacttttgcaagattttatgaact 243  Q
    ||||| |||||||| ||| | ||||||| || ||||||||||| ||||||  | |||||||| |  |||| |||||||||  || |||||||||||||||    
T  6523355 tatttcctttatggtatttctgttcttgtaatgattgatccatattggggtgagaagtataagcttcaagtttattcactcatggaagattttatgaact 6523256  T
Q  244 tg 245  Q
    ||    
T  6523255 tg 6523254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 93 - 141
Target Start/End: Original strand, 1822310 - 1822358
Alignment:
Q  93 ggtgttgattttggttttggaatttataatgatcatcattatcatttag 141  Q
    |||| ||||||||| ||| ||||||||||||| ||||||||||||||||    
T  1822310 ggtgctgattttgggttttgaatttataatgaccatcattatcatttag 1822358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 105 - 181
Target Start/End: Complemental strand, 6496675 - 6496599
Alignment:
Q  105 ggttttggaatttataatgatcatcattatcatttagggtattttctttatggaattgcagttcttgcaaagattga 181  Q
    ||||| ||||| ||||||||||||  | |||| ||||| || ||||||||||||||||| |||||| | ||||||||    
T  6496675 ggtttcggaatctataatgatcatgctgatcacttaggatactttctttatggaattgctgttcttactaagattga 6496599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 137 - 223
Target Start/End: Original strand, 1827215 - 1827301
Alignment:
Q  137 tttagggtattttctttatggaattgcagttcttgcaaagattgatccattttggggacaaaagtataaaccacaagcttattcact 223  Q
    |||||| || ||||| ||| |||||||||| ||||||||||||||| || |||||||   ||| ||||| || ||||| ||||||||    
T  1827215 tttaggatactttctctatcgaattgcagtgcttgcaaagattgattcaatttggggtagaaaatataagcctcaagcctattcact 1827301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 93 - 142
Target Start/End: Original strand, 1827157 - 1827206
Alignment:
Q  93 ggtgttgattttggttttggaatttataatgatcatcattatcatttagg 142  Q
    |||| |||||| || |||||||||||||| || |||||||||||||||||    
T  1827157 ggtgctgatttcgggtttggaatttataacgaccatcattatcatttagg 1827206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 275 - 379
Target Start/End: Complemental strand, 6457205 - 6457101
Alignment:
Q  275 tttaaggtgttttgattttttcaagttgcattcttgggctgcaggagtgactgaatatgaaaatggaaggaatcaagaaagttcaagtgaagcagtgaat 374  Q
    |||||||||||| ||| |||  || || ||||||||||||| |||| | |  |||| || | ||||||| |||||||| ||| | |||||||| ||||||    
T  6457205 tttaaggtgtttcgatctttataaatttcattcttgggctggaggactaatcgaatttgcagatggaagaaatcaagagagtactagtgaagctgtgaat 6457106  T
Q  375 gcata 379  Q
    |||||    
T  6457105 gcata 6457101  T

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