View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2668_low_1 (Length: 545)

Name: NF2668_low_1
Description: NF2668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2668_low_1
NF2668_low_1
[»] scaffold0197 (2 HSPs)
scaffold0197 (54-516)||(30353-30820)
scaffold0197 (14-56)||(28321-28363)
[»] chr7 (4 HSPs)
chr7 (206-516)||(21317073-21317382)
chr7 (14-176)||(21316821-21316983)
chr7 (14-137)||(21314036-21314159)
chr7 (454-516)||(3930281-3930343)
[»] chr2 (1 HSPs)
chr2 (450-516)||(13576090-13576156)
[»] chr5 (3 HSPs)
chr5 (455-501)||(12531239-12531285)
chr5 (455-501)||(12547334-12547380)
chr5 (456-501)||(9866993-9867038)
[»] chr8 (3 HSPs)
chr8 (455-495)||(38799242-38799282)
chr8 (455-495)||(38822235-38822275)
chr8 (453-516)||(43479994-43480057)


Alignment Details
Target: scaffold0197 (Bit Score: 333; Significance: 0; HSPs: 2)
Name: scaffold0197
Description:

Target: scaffold0197; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 54 - 516
Target Start/End: Original strand, 30353 - 30820
Alignment:
Q  54 taaatgaatgaggtgaggacaagtgaagtagttaacagtatcatgaaagttta-----cgatattgcgcttgagtcttattgaaaagaatcatatgcaaa 148  Q
    ||||||||||||||||||||||||||||||||||||||||||||  |   |||     | ||||||||||||||||||||||||||||||||||||||||    
T  30353 taaatgaatgaggtgaggacaagtgaagtagttaacagtatcattcattcttatcaccccatattgcgcttgagtcttattgaaaagaatcatatgcaaa 30452  T
Q  149 tgtcgtaatgcaattccgagatatctatnnnnnnnnnnnnnnnnn-ttagagataccttattggttggtttcacatgccacggatcccgatcctatcacc 247  Q
    ||||||||||||||||||||||||||||                  ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30453 tgtcgtaatgcaattccgagatatctataaaaaaaaaaaaaaaaaattagagataccttattggttggtttcacatgccacggatcccgatcctatcacc 30552  T
Q  248 cttcctgcaaagacgcacaaccgttgataactattcccatcaacggtcaccatctccccctttcaccttctcaaattttcccaattcccgcannnnnnnc 347  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |    
T  30553 cttcctgcaaagacgcacaaccgttgataactatttccatcaacggtcaccatctccccctttcaccttctcaaattttcccaattcccgcatttttttc 30652  T
Q  348 ttcaatcttctccgccctataaaacacccaaaacacttcttccaccatccatcatcccaataacatctcaaaatattttctttctcttcaatttcttttc 447  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  30653 ttcaatcttctccgccctataaaacacccaaaacacttcttccaccatccatcatcccaataacatctc-aaatattttctttctcttcaatttcttttc 30751  T
Q  448 aatcaaaatggcacgtaccaaacaaacagcacgcaaatccaccggcggaaaagccccacgcaaacaact 516  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30752 aatcaaaatggcacgtaccaaacaaacagcacgcaaatccaccggcggaaaagccccacgcaaacaact 30820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0197; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 14 - 56
Target Start/End: Original strand, 28321 - 28363
Alignment:
Q  14 agacaaacctagggatgtcaaagtgaatggaaaagataagtaa 56  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  28321 agacaaacctagggatgtcaaagtgaatggaaaagataagtaa 28363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 262; Significance: 1e-146; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 206 - 516
Target Start/End: Original strand, 21317073 - 21317382
Alignment:
Q  206 tattggttggtttcacatgccacggatcccgatcctatcacccttcctgcaaagacgcacaaccgttgataactattcccatcaacggtcaccatctccc 305  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21317073 tattggttggtttcacatgccacggatcccgatcctatcacccttcctgcaaagacgcacaaccgttgataactattcccatcaacggtcaccatctccc 21317172  T
Q  306 cctttcaccttctcaaattttcccaattcccgcannnnnnncttcaatcttctccgccctataaaacacccaaaacacttcttccaccatccatcatccc 405  Q
    ||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  21317173 cctttcaccttctcaaattttcccaattcccgcatttttttcttcaatcttctccgccctataaaacacccaaaacacttcttccaacatccatcatccc 21317272  T
Q  406 aataacatctcaaaatattttctttctcttcaatttcttttcaatcaaaatggcacgtaccaaacaaacagcacgcaaatccaccggcggaaaagcccca 505  Q
    ||||||||||| |||||||||||||||||    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21317273 aataacatctc-aaatattttctttctctcagttttcttttcaatcaaaatggcacgtaccaaacaaacagcacgcaaatccaccggcggaaaagcccca 21317371  T
Q  506 cgcaaacaact 516  Q
    |||||||||||    
T  21317372 cgcaaacaact 21317382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 143; E-Value: 7e-75
Query Start/End: Original strand, 14 - 176
Target Start/End: Original strand, 21316821 - 21316983
Alignment:
Q  14 agacaaacctagggatgtcaaagtgaatggaaaagataagtaaatgaatgaggtgaggacaagtgaagtagttaacagtatcatgaaagtttacgatatt 113  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||    
T  21316821 agacaaacctagggatgtcaaagtgaatggaacagataagtaaatgaatgaggtgaggacaagtgaattagttaacagtatcatgaaagtttatgatatt 21316920  T
Q  114 gcgcttgagtcttattgaaaagaatcatatgcaaatgtcgtaatgcaattccgagatatctat 176  Q
    ||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  21316921 gcgctcgagtcttattgaaaagaatcatatacaaatgtcgtaatgcaattccgagatatctat 21316983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 14 - 137
Target Start/End: Original strand, 21314036 - 21314159
Alignment:
Q  14 agacaaacctagggatgtcaaagtgaatggaaaagataagtaaatgaatgaggtgaggacaagtgaagtagttaacagtatcatgaaagtttacgatatt 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  21314036 agacaaacctagggatgtcaaagtgaatggaaaagataagtaaatgaatgaggtgaggacaagtgaagtagttaacagtatcatgaaagtttatgatatt 21314135  T
Q  114 gcgcttgagtcttattgaaaagaa 137  Q
    ||||||||||||||||||||||||    
T  21314136 gcgcttgagtcttattgaaaagaa 21314159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 454 - 516
Target Start/End: Complemental strand, 3930343 - 3930281
Alignment:
Q  454 aatggcacgtaccaaacaaacagcacgcaaatccaccggcggaaaagccccacgcaaacaact 516  Q
    ||||||||||||||||||||||||||| ||||||||||| |||||||||||||| ||||||||    
T  3930343 aatggcacgtaccaaacaaacagcacgaaaatccaccggaggaaaagccccacggaaacaact 3930281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 59; Significance: 1e-24; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 450 - 516
Target Start/End: Original strand, 13576090 - 13576156
Alignment:
Q  450 tcaaaatggcacgtaccaaacaaacagcacgcaaatccaccggcggaaaagccccacgcaaacaact 516  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||    
T  13576090 tcaaaatggcacgtaccaaacaaacagcccgcaaatccaccggcggaaaagcaccacgcaaacaact 13576156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 455 - 501
Target Start/End: Original strand, 12531239 - 12531285
Alignment:
Q  455 atggcacgtaccaaacaaacagcacgcaaatccaccggcggaaaagc 501  Q
    ||||| |||||||| |||||||| |||||||||||||||||||||||    
T  12531239 atggctcgtaccaagcaaacagctcgcaaatccaccggcggaaaagc 12531285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 455 - 501
Target Start/End: Complemental strand, 12547380 - 12547334
Alignment:
Q  455 atggcacgtaccaaacaaacagcacgcaaatccaccggcggaaaagc 501  Q
    ||||| |||||||| |||||||| |||||||||||||||||||||||    
T  12547380 atggctcgtaccaagcaaacagctcgcaaatccaccggcggaaaagc 12547334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 456 - 501
Target Start/End: Complemental strand, 9867038 - 9866993
Alignment:
Q  456 tggcacgtaccaaacaaacagcacgcaaatccaccggcggaaaagc 501  Q
    ||||| ||||||||||||| || ||||||||||||||||| |||||    
T  9867038 tggcatgtaccaaacaaacggctcgcaaatccaccggcggtaaagc 9866993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 455 - 495
Target Start/End: Original strand, 38799242 - 38799282
Alignment:
Q  455 atggcacgtaccaaacaaacagcacgcaaatccaccggcgg 495  Q
    |||||||||||||| |||||||| |||||||||||||||||    
T  38799242 atggcacgtaccaagcaaacagctcgcaaatccaccggcgg 38799282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 455 - 495
Target Start/End: Complemental strand, 38822275 - 38822235
Alignment:
Q  455 atggcacgtaccaaacaaacagcacgcaaatccaccggcgg 495  Q
    |||||||||||||| |||||||| |||||||||||||||||    
T  38822275 atggcacgtaccaagcaaacagctcgcaaatccaccggcgg 38822235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 453 - 516
Target Start/End: Complemental strand, 43480057 - 43479994
Alignment:
Q  453 aaatggcacgtaccaaacaaacagcacgcaaatccaccggcggaaaagccccacgcaaacaact 516  Q
    ||||||| |||||||||||||| || |||||||||||||| || ||||| ||| | ||||||||    
T  43480057 aaatggctcgtaccaaacaaaccgctcgcaaatccaccggtggcaaagctccaaggaaacaact 43479994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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