View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2668_low_18 (Length: 251)

Name: NF2668_low_18
Description: NF2668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2668_low_18
NF2668_low_18
[»] chr7 (6 HSPs)
chr7 (31-251)||(2333919-2334139)
chr7 (76-184)||(41482419-41482528)
chr7 (30-172)||(23318950-23319089)
chr7 (30-172)||(39644868-39645007)
chr7 (99-197)||(24429720-24429821)
chr7 (76-176)||(39594642-39594742)
[»] chr1 (7 HSPs)
chr1 (30-187)||(26793721-26793876)
chr1 (76-172)||(50004908-50005004)
chr1 (37-176)||(19806764-19806902)
chr1 (37-165)||(4076365-4076490)
chr1 (76-187)||(9383223-9383335)
chr1 (65-188)||(6768258-6768382)
chr1 (76-176)||(49236174-49236274)
[»] chr4 (9 HSPs)
chr4 (31-188)||(45413765-45413920)
chr4 (76-186)||(36625533-36625644)
chr4 (76-184)||(2183302-2183411)
chr4 (76-176)||(19181421-19181521)
chr4 (76-187)||(43481302-43481412)
chr4 (78-177)||(44126013-44126112)
chr4 (99-187)||(34666439-34666528)
chr4 (78-184)||(26635260-26635367)
chr4 (99-165)||(24155198-24155264)
[»] chr2 (4 HSPs)
chr2 (30-187)||(40626433-40626588)
chr2 (77-172)||(6452471-6452566)
chr2 (31-171)||(6457563-6457700)
chr2 (76-172)||(18665167-18665263)
[»] chr6 (4 HSPs)
chr6 (77-176)||(8547443-8547542)
chr6 (99-176)||(8573796-8573873)
chr6 (29-196)||(18596615-18596780)
chr6 (100-176)||(129107-129183)
[»] chr8 (5 HSPs)
chr8 (76-165)||(31734323-31734412)
chr8 (98-172)||(11066512-11066586)
chr8 (76-176)||(9028642-9028742)
chr8 (67-176)||(22573133-22573242)
chr8 (99-176)||(556809-556888)
[»] chr3 (2 HSPs)
chr3 (98-176)||(38457766-38457844)
chr3 (78-186)||(7038613-7038722)
[»] chr5 (2 HSPs)
chr5 (99-172)||(13109739-13109812)
chr5 (76-176)||(34731276-34731376)


Alignment Details
Target: chr7 (Bit Score: 169; Significance: 1e-90; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 31 - 251
Target Start/End: Complemental strand, 2334139 - 2333919
Alignment:
Q  31 agacatgatatgataacactatcatatcttgaatattcaatcaggtgtttggtgcaccaataagattggataacttaaacctatttcgaatcctatccta 130  Q
    |||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||  ||||||||||||    
T  2334139 agacatgatatgataacactatcatatcctgaatattcaatccggtgtttggtgcaccaataggattggataacttaaacctatttttaatcctatccta 2334040  T
Q  131 ttcacattttgttatttttatccttggtttttggttggttagcaactgatagcataactatcaaacaagcgtattctatattcctcaaaaacctccttcg 230  Q
    ||||| ||||||||||||||||  |||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| |||||||    
T  2334039 ttcaccttttgttatttttatctctggtttttggttggttagcaaccgatagcataactatcaaacacgcgtattctatattcctcaaaaacttccttcg 2333940  T
Q  231 actcctattgcttctagtttt 251  Q
    ||||  |||||||||||||||    
T  2333939 actctcattgcttctagtttt 2333919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 76 - 184
Target Start/End: Complemental strand, 41482528 - 41482419
Alignment:
Q  76 tgtttggtgcaccaataagattggataacttaaacctatttcgaatcctatcctattcacattttgttatttttatccttggtttttggttggttagcaa 175  Q
    ||||||||||||||| | ||  |||||||||||||||||||  |||| ||||||| ||||  |||||||||||||||||| ||||||||| |||||||||    
T  41482528 tgtttggtgcaccaacaggaaaggataacttaaacctatttttaatcatatcctactcaccctttgttatttttatccttagtttttggtgggttagcaa 41482429  T
Q  176 -ctgatagca 184  Q
     |||||||||    
T  41482428 cctgatagca 41482419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 30 - 172
Target Start/End: Complemental strand, 23319089 - 23318950
Alignment:
Q  30 aagacatgatatgataacactatcatatcttgaatattcaatcaggtgtttggtgcaccaataagattggataacttaaacctatttcgaatcctatcct 129  Q
    |||||| |||||||||||||||||||||| ||| ||   |||| | |||||||| |||||| | ||  |||||| ||||||||||||  |||||||||||    
T  23319089 aagacaggatatgataacactatcatatcctgatta---aatctgttgtttggtccaccaacatgaaaggataatttaaacctatttttaatcctatcct 23318993  T
Q  130 attcacattttgttatttttatccttggtttttggttggttag 172  Q
    ||| |   ||||| |||||||||||||||||||| | ||||||    
T  23318992 attgagcctttgtaatttttatccttggtttttgatgggttag 23318950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 30 - 172
Target Start/End: Original strand, 39644868 - 39645007
Alignment:
Q  30 aagacatgatatgataacactatcatatcttgaatattcaatcaggtgtttggtgcaccaataagattggataacttaaacctatttcgaatcctatcct 129  Q
    |||||| |||||||||| ||||||||||| |  || ||||||  | |||||||||| ||||||  |  |||||||||||||| ||||  |||||||||||    
T  39644868 aagacaggatatgataaaactatcatatcat--at-ttcaatttgttgtttggtgcgccaatagaaaaggataacttaaacccatttataatcctatcct 39644964  T
Q  130 attcacattttgttatttttatccttggtttttggttggttag 172  Q
    | |||   |||||||||||||||||| ||||||||| ||||||    
T  39644965 actcatcctttgttatttttatccttagtttttggtgggttag 39645007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 99 - 197
Target Start/End: Original strand, 24429720 - 24429821
Alignment:
Q  99 gataacttaaacctatttcgaatcctatcctattcacattttgttatttttatccttggtttttggttggttagcaa-ctgatagcataa--ctatcaaa 195  Q
    ||||| ||||| ||||||  ||||||||| || ||||  |||||||||||||||||| ||||||||| ||||||||| ||||||||||||  ||||||||    
T  24429720 gataatttaaaactatttataatcctatcttactcaccctttgttatttttatccttagtttttggtgggttagcaacctgatagcataaagctatcaaa 24429819  T
Q  196 ca 197  Q
    ||    
T  24429820 ca 24429821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 76 - 176
Target Start/End: Original strand, 39594642 - 39594742
Alignment:
Q  76 tgtttggtgcaccaataagattggataacttaaacctatttcgaatcctatcctattcacattttgttatttttatccttggtttttggttggttagcaa 175  Q
    |||||||||||||||||||||  | ||| ||||||||||| | |||| |||| ||||||   ||||| |||||||||||| ||||||| | |||||||||    
T  39594642 tgtttggtgcaccaataagatatgctaaattaaacctattactaatcttatcatattcatcctttgtaatttttatccttagtttttgatgggttagcaa 39594741  T
Q  176 c 176  Q
    |    
T  39594742 c 39594742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 65; Significance: 1e-28; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 30 - 187
Target Start/End: Original strand, 26793721 - 26793876
Alignment:
Q  30 aagacatgatatgataacactatcatatcttgaatattcaatcaggtgtttggtgcaccaataagattggataacttaaacctatttcgaatcctatcct 129  Q
    ||||||||||||||||  ||||||||||| |||   ||||||| | |||||||||||||||||  |  ||||||||||||| |||||| |||||||||||    
T  26793721 aagacatgatatgatagaactatcatatcctga---ttcaatccgttgtttggtgcaccaatagaaaaggataacttaaacttatttctaatcctatcct 26793817  T
Q  130 attcacattttgttatttttatccttggtttttggttggttagcaa-ctgatagcataa 187  Q
    | |||   |||||||||||||| ||| ||||||||| ||||||||| ||||||||||||    
T  26793818 aatcaacctttgttatttttattcttagtttttggtgggttagcaacctgatagcataa 26793876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 76 - 172
Target Start/End: Complemental strand, 50005004 - 50004908
Alignment:
Q  76 tgtttggtgcaccaataagattggataacttaaacctatttcgaatcctatcctattcacattttgttatttttatccttggtttttggttggttag 172  Q
    |||||||||||||||||| |  |||||| ||||||||||||| |||||||||||| ||||  |||||||||||||||||| ||||||||| ||||||    
T  50005004 tgtttggtgcaccaataaaaaaggataatttaaacctatttctaatcctatcctaatcaccctttgttatttttatccttagtttttggtgggttag 50004908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 37 - 176
Target Start/End: Complemental strand, 19806902 - 19806764
Alignment:
Q  37 gatatgataacactatcatatcttgaatattcaatcaggtgtttggt--gcaccaataagattggataacttaaacctatttcgaatcctatcctattca 134  Q
    ||||||||||||||||| |||| |   ||||||||| ||||||||||  ||| ||||| ||  |||||| ||||||||||||| ||||||||||||||||    
T  19806902 gatatgataacactatcctatcct---tattcaatctggtgtttggtttgcatcaataggaaaggataaattaaacctatttctaatcctatcctattca 19806806  T
Q  135 cattttgttatttttatccttggtttttggttggttagcaac 176  Q
    |  |||||| || | |||||| ||||||||| ||||| ||||    
T  19806805 ctctttgtttttctaatccttagtttttggtgggttaacaac 19806764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 37 - 165
Target Start/End: Complemental strand, 4076490 - 4076365
Alignment:
Q  37 gatatgataacactatcatatcttgaatattcaatcaggtgtttggtgcaccaataagattggataacttaaacctatttcgaatcctatcctattcaca 136  Q
    |||||||||||||||||||| | |   |||| |||| ||||||||||||| ||||| ||  |||||| ||||||||||| | |||||||||||||||||     
T  4076490 gatatgataacactatcataccct---tatttaatctggtgtttggtgcatcaataggaaaggataaattaaacctattactaatcctatcctattcact 4076394  T
Q  137 ttttgttatttttatccttggtttttggt 165  Q
     |||||| || | |||||| |||||||||    
T  4076393 ctttgtttttctaatccttagtttttggt 4076365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 76 - 187
Target Start/End: Complemental strand, 9383335 - 9383223
Alignment:
Q  76 tgtttggtgcaccaataagattggataacttaaacctatttcgaatcctatcctattcacattttgttatttttatccttggtttttggttggttagcaa 175  Q
    ||||||||||||||||| ||  |||||| ||||||| ||||| |||| ||||||| ||||  ||||||||||| ||||||  |||||| | |||||||||    
T  9383335 tgtttggtgcaccaataggaacggataaattaaaccaatttctaatcttatcctactcaccctttgttattttcatccttaatttttgatgggttagcaa 9383236  T
Q  176 -ctgatagcataa 187  Q
     ||||||||||||    
T  9383235 cctgatagcataa 9383223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 65 - 188
Target Start/End: Original strand, 6768258 - 6768382
Alignment:
Q  65 attcaatcaggtgtttggtgcaccaataagattggataacttaaacctatttcgaatcctatcctattcacattttgttatttttatccttggtttttgg 164  Q
    |||||||| | ||||||||| |||||||  |   ||||| |||||| ||||||  ||||||| |||| ||   ||||||||||||||||||  |||||||    
T  6768258 attcaatctgttgtttggtgtaccaatagaaaatgataaattaaacttatttcctatcctattctatccaacctttgttatttttatccttaatttttgg 6768357  T
Q  165 ttggttagcaa-ctgatagcataac 188  Q
    | |||||| || |||||||||||||    
T  6768358 tgggttaggaacctgatagcataac 6768382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 176
Target Start/End: Original strand, 49236174 - 49236274
Alignment:
Q  76 tgtttggtgcaccaataagattggataacttaaacctatttcgaatcctatcctattcacattttgttatttttatccttggtttttggttggttagcaa 175  Q
    |||||||||||||||||  |  |||||| |||||| ||||||   ||||||||||  ||   ||| |||||  ||||||||||||||||| |||||||||    
T  49236174 tgtttggtgcaccaatagaaaaggataaattaaacatatttcatttcctatcctacccaacctttcttattcatatccttggtttttggtgggttagcaa 49236273  T
Q  176 c 176  Q
    |    
T  49236274 c 49236274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 61; Significance: 3e-26; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 31 - 188
Target Start/End: Complemental strand, 45413920 - 45413765
Alignment:
Q  31 agacatgatatgataacactatcatatcttgaatattcaatcaggtgtttggtgcaccaataagattggataacttaaacctatttcgaatcctatccta 130  Q
    ||||| |||| ||||  |||||||||||||||   ||||||| | ||||||||||||||||| ||  |||||| |||||||||||||  |||||||||||    
T  45413920 agacaggataggatagaactatcatatcttga---ttcaatcggttgtttggtgcaccaataggaaaggataaattaaacctatttcctatcctatccta 45413824  T
Q  131 ttcacattttgttatttttatccttggtttttggttggttagcaa-ctgatagcataac 188  Q
    |  |   |||||||||||||||||| ||||||||| ||||||||| |||||||||||||    
T  45413823 tctaacctttgttatttttatccttagtttttggtgggttagcaacctgatagcataac 45413765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 76 - 186
Target Start/End: Complemental strand, 36625644 - 36625533
Alignment:
Q  76 tgtttggtgcaccaataagattggataacttaaacctatttcgaatcctatcctattcacattttgttatttttatccttggtttttggttggttagcaa 175  Q
    |||||||||||| |||| |||  ||||| ||||||||||| |||||||||||||||||||  ||||| ||| | ||||||  |||||| | |||||||||    
T  36625644 tgtttggtgcactaataggatatgataaattaaacctattacgaatcctatcctattcaccctttgtaattctaatccttactttttgttgggttagcaa 36625545  T
Q  176 c-tgatagcata 186  Q
    | ||||||||||    
T  36625544 catgatagcata 36625533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 76 - 184
Target Start/End: Original strand, 2183302 - 2183411
Alignment:
Q  76 tgtttggtgcaccaataagattggataacttaaacctatttcgaatcctatcctattcacattttgttatttttatccttggtttttggttggttagcaa 175  Q
    |||||||||||||||||  |  |||||| ||||||  ||||| ||||||||||||| ||   ||||||||||||||||||  |||||||| |||||||||    
T  2183302 tgtttggtgcaccaatagaaaaggataaattaaactcatttccaatcctatcctatccaacctttgttatttttatccttaatttttggtgggttagcaa 2183401  T
Q  176 -ctgatagca 184  Q
     |||||||||    
T  2183402 cctgatagca 2183411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 76 - 176
Target Start/End: Complemental strand, 19181521 - 19181421
Alignment:
Q  76 tgtttggtgcaccaataagattggataacttaaacctatttcgaatcctatcctattcacattttgttatttttatccttggtttttggttggttagcaa 175  Q
    ||||||||||||||| | |||  ||||| ||||||||||||| |||||||||||| |||   ||| |||||||| ||||| ||||||||| | |||||||    
T  19181521 tgtttggtgcaccaacatgatatgataaattaaacctatttctaatcctatcctactcatcctttattatttttgtccttagtttttggtggattagcaa 19181422  T
Q  176 c 176  Q
    |    
T  19181421 c 19181421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 76 - 187
Target Start/End: Complemental strand, 43481412 - 43481302
Alignment:
Q  76 tgtttggtgcaccaataagattggataacttaaacctatttcgaatcctatcctattcacattttgttatttttatccttggtttttggttggttagcaa 175  Q
    ||||||||||||||||||||  |||||| ||||||  ||||| ||||| ||| ||||||| |||| |||||||||||| | ||||||| | | |||||||    
T  43481412 tgtttggtgcaccaataagaaaggataaattaaactcatttctaatcc-atcttattcaccttttattatttttatcc-tagtttttgttggattagcaa 43481315  T
Q  176 -ctgatagcataa 187  Q
     ||||||||||||    
T  43481314 cctgatagcataa 43481302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 78 - 177
Target Start/End: Original strand, 44126013 - 44126112
Alignment:
Q  78 tttggtgcaccaataagattggataacttaaacctatttcgaatcctatcctattcacattttgttatttttatccttggtttttggttggttagcaact 177  Q
    ||||||||| ||||| ||   ||||| |||||| |||||| ||||||||||||||||| ||||||| || | || ||| ||||||| | |||||||||||    
T  44126013 tttggtgcagcaataggaaatgataaattaaacttatttctaatcctatcctattcaccttttgtttttctaattctttgtttttgatgggttagcaact 44126112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 99 - 187
Target Start/End: Original strand, 34666439 - 34666528
Alignment:
Q  99 gataacttaaacctatttcgaatcctatcctattcacattttgttatttttatccttggtttttggttggttagcaa-ctgatagcataa 187  Q
    ||||||||||||||||||| |||| |||||||||| |  ||| |||||||||||| |   |||| || ||||||||| ||||||||||||    
T  34666439 gataacttaaacctatttctaatcatatcctattccctctttcttatttttatccgtaactttttgtgggttagcaacctgatagcataa 34666528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 78 - 184
Target Start/End: Complemental strand, 26635367 - 26635260
Alignment:
Q  78 tttggtgcaccaataagattggataacttaaacctatttcgaatcctatcctattcacattttgttatttttatccttggtttttggttggttagcaa-c 176  Q
    ||||||||||||| | |||  ||||| || |||||||||| ||| |||||||| ||    ||| ||||| |||||||| ||||||||| ||||||||| |    
T  26635367 tttggtgcaccaacatgatatgataaatttaacctatttccaattctatcctactcctcctttattattcttatccttagtttttggtgggttagcaacc 26635268  T
Q  177 tgatagca 184  Q
    ||||||||    
T  26635267 tgatagca 26635260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 99 - 165
Target Start/End: Original strand, 24155198 - 24155264
Alignment:
Q  99 gataacttaaacctatttcgaatcctatcctattcacattttgttatttttatccttggtttttggt 165  Q
    ||||||||||| ||||||| |||||||||||| |||   |||| |||||| |||||| |||||||||    
T  24155198 gataacttaaagctatttctaatcctatcctactcagcatttgatattttcatccttagtttttggt 24155264  T

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Target: chr2 (Bit Score: 57; Significance: 7e-24; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 30 - 187
Target Start/End: Original strand, 40626433 - 40626588
Alignment:
Q  30 aagacatgatatgataacactatcatatcttgaatattcaatcaggtgtttggtgcaccaataagattggataacttaaacctatttcgaatcctatcct 129  Q
    |||||| |||||||||| |||||||||||||||   ||||||| | ||||||||||||||||| ||  |||||| |||||  |||||| |||||||||||    
T  40626433 aagacaggatatgataaaactatcatatcttga---ttcaatctgctgtttggtgcaccaataggaaaggataatttaaatatatttctaatcctatcct 40626529  T
Q  130 attcacattttgttatttttatccttggtttttggttggttagcaa-ctgatagcataa 187  Q
    | ||||  ||| ||||||||||||||   ||||||| ||||| ||| ||||||||||||    
T  40626530 actcaccctttattatttttatccttaaattttggtgggttaacaacctgatagcataa 40626588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 77 - 172
Target Start/End: Original strand, 6452471 - 6452566
Alignment:
Q  77 gtttggtgcaccaataagattggataacttaaacctatttcgaatcctatcctattcacattttgttatttttatccttggtttttggttggttag 172  Q
    ||||| ||||||||||||||  ||||| ||||||||||| | |||| ||||||||||||  ||||| ||| | |||||| ||||||| | ||||||    
T  6452471 gtttgatgcaccaataagatatgataaattaaacctattactaatcttatcctattcacgctttgtaattctaatccttagtttttgttgggttag 6452566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 31 - 171
Target Start/End: Original strand, 6457563 - 6457700
Alignment:
Q  31 agacatgatatgataacactatcatatcttgaatattcaatcaggtgtttggtgcaccaataagattggataacttaaacctatttcgaatcctatccta 130  Q
    ||||| |||||||||  ||||||||||| |||   ||||||| | |||||||||||||||||  |   ||||| ||||| | ||||| |||| |||| ||    
T  6457563 agacaggatatgatagaactatcatatcatga---ttcaatctgttgtttggtgcaccaatagaaaatgataaattaaatcaatttccaatcatatctta 6457659  T
Q  131 ttcacattttgttatttttatccttggtttttggttggtta 171  Q
    | |||  ||||||||||||||||||  |||||||| |||||    
T  6457660 tccaccctttgttatttttatccttaatttttggtgggtta 6457700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 76 - 172
Target Start/End: Original strand, 18665167 - 18665263
Alignment:
Q  76 tgtttggtgcaccaataagattggataacttaaacctatttcgaatcctatcctattcacattttgttatttttatccttggtttttggttggttag 172  Q
    ||||| ||||||||| | ||  |||||||||||||||||||| |||  |||| || ||||  ||||||| ||||||||||  |||||||| ||||||    
T  18665167 tgtttcgtgcaccaaaaggaaaggataacttaaacctatttctaataatatcttactcaccctttgttaattttatccttaatttttggtgggttag 18665263  T

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Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 77 - 176
Target Start/End: Complemental strand, 8547542 - 8547443
Alignment:
Q  77 gtttggtgcaccaataagattggataacttaaacctatttcgaatcctatcctattcacattttgttatttttatccttggtttttggttggttagcaac 176  Q
    |||||| ||| ||||| ||  |||||||||||||||||||| |||| |||| |||||||  |||||||||||||| ||| ||||||||| ||||||||||    
T  8547542 gtttggagcatcaataggaaaggataacttaaacctatttctaatcttatcatattcaccctttgttatttttatacttagtttttggtgggttagcaac 8547443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 99 - 176
Target Start/End: Complemental strand, 8573873 - 8573796
Alignment:
Q  99 gataacttaaacctatttcgaatcctatcctattcacattttgttatttttatccttggtttttggttggttagcaac 176  Q
    ||||||||||||||||||| |||| |||| |||||||  |||||||||||||| ||| ||||||||| ||||||||||    
T  8573873 gataacttaaacctatttctaatcttatcatattcaccctttgttatttttatacttagtttttggtgggttagcaac 8573796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 29 - 196
Target Start/End: Complemental strand, 18596780 - 18596615
Alignment:
Q  29 aaagacatgatatgataacactatcatatcttgaatattcaatcaggtgtttggtgcaccaataagattggataacttaaacctatttcgaatcctatcc 128  Q
    |||||||||||||||||| ||||||||||||||   |||||||  | |||| | || || | |||||   ||||| ||||||||||||  |||||| ||     
T  18596780 aaagacatgatatgataaaactatcatatcttg---attcaatttgatgttcgatgtactagtaagaaatgataatttaaacctatttttaatcctttca 18596684  T
Q  129 tattcacattttgttatttttatccttggtttttggttggttagcaac-tgatagcataactatcaaac 196  Q
    ||   ||  ||| ||| |||||||||| ||||||||| |||||||||| | ||| ||||||||||||||    
T  18596683 taccaaccctttattacttttatccttagtttttggtgggttagcaacataatatcataactatcaaac 18596615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 100 - 176
Target Start/End: Complemental strand, 129183 - 129107
Alignment:
Q  100 ataacttaaacctatttcgaatcctatcctattcacattttgttatttttatccttggtttttggttggttagcaac 176  Q
    |||||||||||  ||||  ||||||||| |||||||  ||||||||||||||| || ||||||| | || |||||||    
T  129183 ataacttaaactcatttttaatcctatcatattcaccctttgttatttttatctttagtttttgatgggctagcaac 129107  T

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Target: chr8 (Bit Score: 46; Significance: 2e-17; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 76 - 165
Target Start/End: Original strand, 31734323 - 31734412
Alignment:
Q  76 tgtttggtgcaccaataagattggataacttaaacctatttcgaatcctatcctattcacattttgttatttttatccttggtttttggt 165  Q
    ||||||||||||||||||||   ||||| ||||||||||||| |||| ||||| || |||  |||||||||||||||||| |||||||||    
T  31734323 tgtttggtgcaccaataagaaatgataaattaaacctatttccaatcttatcccatccaccctttgttatttttatccttagtttttggt 31734412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 98 - 172
Target Start/End: Original strand, 11066512 - 11066586
Alignment:
Q  98 ggataacttaaacctatttcgaatcctatcctattcacattttgttatttttatccttggtttttggttggttag 172  Q
    |||||||||||||||||||| |||||||||||| |||   ||||||||||||||||||  |||||||| ||||||    
T  11066512 ggataacttaaacctatttctaatcctatcctactcagcctttgttatttttatccttaatttttggtaggttag 11066586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 76 - 176
Target Start/End: Complemental strand, 9028742 - 9028642
Alignment:
Q  76 tgtttggtgcaccaataagattggataacttaaacctatttcgaatcctatcctattcacattttgttatttttatccttggtttttggttggttagcaa 175  Q
    ||||||||||||||| |  |  |||||| ||||||||||||  |||||||||||||| |   ||||| ||| |||||||||||||||| | |||||||||    
T  9028742 tgtttggtgcaccaacataaaaggataatttaaacctatttttaatcctatcctattgaacctttgtaattcttatccttggtttttgatgggttagcaa 9028643  T
Q  176 c 176  Q
    |    
T  9028642 c 9028642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 67 - 176
Target Start/End: Original strand, 22573133 - 22573242
Alignment:
Q  67 tcaatcaggtgtttggtgcaccaataagattggataacttaaacctatttcgaatcctatcctattcacattttgttatttttatccttggtttttggtt 166  Q
    |||||| | ||||||||||||||| | ||   ||||| || ||||| |||| |||||||||||||| |   ||||| ||| |||||||| |||||||||     
T  22573133 tcaatccgttgtttggtgcaccaacaggaaatgataagtttaacctgtttctaatcctatcctattgaacctttgtaattcttatccttagtttttggtg 22573232  T
Q  167 ggttagcaac 176  Q
    ||||| ||||    
T  22573233 ggttaacaac 22573242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 176
Target Start/End: Original strand, 556809 - 556888
Alignment:
Q  99 gataacttaaacctatttcgaatcctatcctattcacattttgttatttttatccttgg--tttttggttggttagcaac 176  Q
    ||||| ||||||||||||| |||| ||||||||||||  |||||| || | |||||| |  |||||||| ||||||||||    
T  556809 gataaattaaacctatttctaatcatatcctattcaccctttgtttttctaatcctttgtttttttggtgggttagcaac 556888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 98 - 176
Target Start/End: Original strand, 38457766 - 38457844
Alignment:
Q  98 ggataacttaaacctatttcgaatcctatcctattcacattttgttatttttatccttggtttttggttggttagcaac 176  Q
    |||||| ||||||  ||||| ||||||||||||||||| |||||||| |||||||||| || |||||| ||||||||||    
T  38457766 ggataatttaaactcatttctaatcctatcctattcaccttttgttacttttatccttagtatttggtgggttagcaac 38457844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 78 - 186
Target Start/End: Original strand, 7038613 - 7038722
Alignment:
Q  78 tttggtgcaccaataagattggataacttaaacctatttcgaatcctatcctattcacattttgttatttttatccttggtttttggttggttagcaac- 176  Q
    |||||| ||| |||| |||  ||||| ||||||||||| | ||||||||| ||||||  |||||| ||| | ||||||  |||||| | ||||||||||     
T  7038613 tttggtacactaataggatatgataaattaaacctattactaatcctatcgtattcatcttttgtaattctaatccttactttttgttgggttagcaaca 7038712  T
Q  177 tgatagcata 186  Q
    ||||||||||    
T  7038713 tgatagcata 7038722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 99 - 172
Target Start/End: Original strand, 13109739 - 13109812
Alignment:
Q  99 gataacttaaacctatttcgaatcctatcctattcacattttgttatttttatccttggtttttggttggttag 172  Q
    ||||| || ||| |||||| |||| |||||||| |||  |||||||||||||||||| ||||||||| ||||||    
T  13109739 gataagtttaacatatttctaatcatatcctatccaccctttgttatttttatccttagtttttggtgggttag 13109812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 176
Target Start/End: Original strand, 34731276 - 34731376
Alignment:
Q  76 tgtttggtgcaccaataagattggataacttaaacctatttcgaatcctatcctattcacattttgttatttttatccttggtttttggttggttagcaa 175  Q
    ||||||||||||||||| ||  ||||||  ||||||||||   |||||||||||||  |   ||||||||||| |||||| ||||| | | |||||||||    
T  34731276 tgtttggtgcaccaataggaaaggataaactaaacctattgttaatcctatcctatcaatcctttgttattttaatccttagttttagctgggttagcaa 34731375  T
Q  176 c 176  Q
    |    
T  34731376 c 34731376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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