View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2668_low_2 (Length: 425)

Name: NF2668_low_2
Description: NF2668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2668_low_2
NF2668_low_2
[»] chr6 (2 HSPs)
chr6 (11-412)||(15156848-15157249)
chr6 (53-412)||(15144228-15144587)
[»] chr7 (1 HSPs)
chr7 (11-412)||(12160837-12161238)
[»] scaffold0075 (1 HSPs)
scaffold0075 (19-412)||(48765-49158)
[»] chr4 (3 HSPs)
chr4 (19-412)||(9042-9435)
chr4 (331-398)||(10708430-10708497)
chr4 (331-398)||(10922200-10922267)
[»] chr2 (3 HSPs)
chr2 (328-398)||(44377844-44377914)
chr2 (328-398)||(44393424-44393494)
chr2 (322-398)||(41247881-41247957)
[»] scaffold0093 (1 HSPs)
scaffold0093 (331-398)||(13658-13725)


Alignment Details
Target: chr6 (Bit Score: 302; Significance: 1e-170; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 11 - 412
Target Start/End: Original strand, 15156848 - 15157249
Alignment:
Q  11 tagctgttgccaactttcagtttaaagtcatagctaaaatccttgctgacagactggctgctatagccatgcgaattgtgtctgttgagcaacacggatt 110  Q
    ||||| |||||||||||||||||||| ||||| |||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||    
T  15156848 tagctcttgccaactttcagtttaaaatcataactaaaatccttgctgacagactggcttctatagccatgcgaattgtgtccgttgagcaacacggatt 15156947  T
Q  111 tattaaagagcgtagtatctctgagtgtgttattttggcatctgaggctattaacggtatggaccggcgtcagcacggtggtaatattgccctcaaagtg 210  Q
    |||||||||||| |  |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||| || |||||||||||    
T  15156948 tattaaagagcgaaacatctctgagtgtgttattttggcatccgaggctattaacggtatggaccggcgtcagcgcggtggtaatgtttccctcaaagtg 15157047  T
Q  211 gatatcgcgaaagcttttgatacattggattgggattttttaattgttgttattacgcagtttggcttctccatgattttcattaaatggattcggacta 310  Q
    ||||||||||| ||||||||||| |||||||||||||||||||||| |||| |||| |||||||| |||||| ||||||||||| |||||||||||||||    
T  15157048 gatatcgcgaaggcttttgatactttggattgggattttttaattgctgttcttacacagtttggtttctccttgattttcattcaatggattcggacta 15157147  T
Q  311 ttctctattctgccaggctctctattttggtgaatgcaaaagcggtgggctttttctcttgttctcgtggtgttcgacaaggagaccccttgtcccctct 410  Q
    |||| ||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| ||||||||||    
T  15157148 ttctatattctgcccggctctctattttggtgaatgcaaaagcggtgggttttttctcttgttcttgtggtgttcgacaaggagaccccctgtcccctct 15157247  T
Q  411 tc 412  Q
    ||    
T  15157248 tc 15157249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 53 - 412
Target Start/End: Complemental strand, 15144587 - 15144228
Alignment:
Q  53 ttgctgacagactggctgctatagccatgcgaattgtgtctgttgagcaacacggatttattaaagagcgtagtatctctgagtgtgttattttggcatc 152  Q
    ||||||||||||| ||| |||| |||||| |||||||||   ||||||| | ||| ||||| |||||||||||||| |||||||||||||||||||||||    
T  15144587 ttgctgacagacttgcttctattgccatgtgaattgtgttcattgagcatcgcgggtttataaaagagcgtagtatttctgagtgtgttattttggcatc 15144488  T
Q  153 tgaggctattaacggtatggaccggcgtcagcacggtggtaatattgccctcaaagtggatatcgcgaaagcttttgatacattggattgggatttttta 252  Q
     ||||||||||| ||||||||| |||  |||| |||| |||||||||| ||||||||||||||| |||||||||||||||| ||||||||||| ||||||    
T  15144487 cgaggctattaatggtatggacaggcagcagctcggtagtaatattgctctcaaagtggatatctcgaaagcttttgatacgttggattgggaattttta 15144388  T
Q  253 attgttgttattacgcagtttggcttctccatgattttcattaaatggattcggactattctctattctgccaggctctctattttggtgaatgcaaaag 352  Q
    |||| |||| ||||||| |||||||| ||||||||||||||| ||||||||||||| || ||  |||||||| |||||||||||| ||| ||||| ||||    
T  15144387 attgatgttcttacgcaatttggcttttccatgattttcattcaatggattcggaccatccttcattctgcccggctctctatttcggtaaatgccaaag 15144288  T
Q  353 cggtgggctttttctcttgttctcgtggtgttcgacaaggagaccccttgtcccctcttc 412  Q
    ||||||| ||||||||||| |||||||||||||||||||| |||||||||||||| ||||    
T  15144287 cggtgggatttttctcttgctctcgtggtgttcgacaaggggaccccttgtccccccttc 15144228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 11 - 412
Target Start/End: Original strand, 12160837 - 12161238
Alignment:
Q  11 tagctgttgccaactttcagtttaaagtcatagctaaaatccttgctgacagactggctgctatagccatgcgaattgtgtctgttgagcaacacggatt 110  Q
    ||||| |||||||||||||||||||| ||||| |||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||| ||||    
T  12160837 tagctcttgccaactttcagtttaaaatcataactaaaatccttgctgacagactggcttctatagccatgcgaattgtgtccgttgagcaacacagatt 12160936  T
Q  111 tattaaagagcgtagtatctctgagtgtgttattttggcatctgaggctattaacggtatggaccggcgtcagcacggtggtaatattgccctcaaagtg 210  Q
    |||||||||||| |  |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||  |||||||||| ||||||||||||||    
T  12160937 tattaaagagcgaaacatctctgagtgtgttattttggcatccgaggctattaacggtatggaccggcgtcagtgcggtggtaatgttgccctcaaagtg 12161036  T
Q  211 gatatcgcgaaagcttttgatacattggattgggattttttaattgttgttattacgcagtttggcttctccatgattttcattaaatggattcggacta 310  Q
    ||||||||||| ||||||||||| |||||||||||||||||||||| |||| |||| |||||||| |||||| ||||||||||| |||||||||||||||    
T  12161037 gatatcgcgaaggcttttgatactttggattgggattttttaattgctgttcttacacagtttggtttctccttgattttcattcaatggattcggacta 12161136  T
Q  311 ttctctattctgccaggctctctattttggtgaatgcaaaagcggtgggctttttctcttgttctcgtggtgttcgacaaggagaccccttgtcccctct 410  Q
    |||| ||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| ||||||||||    
T  12161137 ttctatattctgcccggctctctattttggtgaatgcaaaagcggtgggttttttctcttgttcttgtggtgttcgacaaggagaccccctgtcccctct 12161236  T
Q  411 tc 412  Q
    ||    
T  12161237 tc 12161238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0075 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: scaffold0075
Description:

Target: scaffold0075; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 19 - 412
Target Start/End: Complemental strand, 49158 - 48765
Alignment:
Q  19 gccaactttcagtttaaagtcatagctaaaatccttgctgacagactggctgctatagccatgcgaattgtgtctgttgagcaacacggatttattaaag 118  Q
    ||||||||| |||||||||||||  |||||||||||||||||||||| ||| |||| ||||||||||||||||| |||||||||||||| ||||||||||    
T  49158 gccaacttttagtttaaagtcattactaaaatccttgctgacagacttgcttctattgccatgcgaattgtgtccgttgagcaacacgggtttattaaag 49059  T
Q  119 agcgtagtatctctgagtgtgttattttggcatctgaggctattaacggtatggaccggcgtcagcacggtggtaatattgccctcaaagtggatatcgc 218  Q
    |||||||||| ||||||||||| ||||||||||||||||||||||||||||||||| |||| || || || ||||||||| | |||||||||||||||||    
T  49058 agcgtagtatttctgagtgtgtaattttggcatctgaggctattaacggtatggacaggcgacaacatggaggtaatatttctctcaaagtggatatcgc 48959  T
Q  219 gaaagcttttgatacattggattgggattttttaattgttgttattacgcagtttggcttctccatgattttcattaaatggattcggactattctctat 318  Q
    ||||||||||||||| |||||||||||||||||||||  |||| ||||||| |||||||| ||||||||||||||| ||||||||||||| ||||| ||     
T  48958 gaaagcttttgatacgttggattgggattttttaatttatgttcttacgcaatttggcttttccatgattttcattcaatggattcggaccattctttac 48859  T
Q  319 tctgccaggctctctattttggtgaatgcaaaagcggtgggctttttctcttgttctcgtggtgttcgacaaggagaccccttgtcccctcttc 412  Q
    ||| || ||||||||||||||||||||||||||  |||||||||||||||||| ||| |||||||||||||||| |||||||||||||| ||||    
T  48858 tcttcccggctctctattttggtgaatgcaaaactggtgggctttttctcttgctcttgtggtgttcgacaaggggaccccttgtccccccttc 48765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 254; Significance: 1e-141; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 19 - 412
Target Start/End: Complemental strand, 9435 - 9042
Alignment:
Q  19 gccaactttcagtttaaagtcatagctaaaatccttgctgacagactggctgctatagccatgcgaattgtgtctgttgagcaacacggatttattaaag 118  Q
    ||||||||| |||||||||||||  |||||||||||||||||||||| ||| |||| ||||||||||||||||| |||||||||||||| ||||||||||    
T  9435 gccaacttttagtttaaagtcattactaaaatccttgctgacagacttgcttctattgccatgcgaattgtgtccgttgagcaacacgggtttattaaag 9336  T
Q  119 agcgtagtatctctgagtgtgttattttggcatctgaggctattaacggtatggaccggcgtcagcacggtggtaatattgccctcaaagtggatatcgc 218  Q
    |||||||||| ||||||||||| ||||||||||||||||||||||||||||||||| |||| || || || ||||||||| | |||||||||||||||||    
T  9335 agcgtagtatttctgagtgtgtaattttggcatctgaggctattaacggtatggacaggcgacaacatggaggtaatatttctctcaaagtggatatcgc 9236  T
Q  219 gaaagcttttgatacattggattgggattttttaattgttgttattacgcagtttggcttctccatgattttcattaaatggattcggactattctctat 318  Q
    ||||||||||||||| |||||||||||||||||||||  |||| ||||||| |||||||| ||||||||||||||| ||||||||||||| ||||| ||     
T  9235 gaaagcttttgatacgttggattgggattttttaatttatgttcttacgcaatttggcttttccatgattttcattcaatggattcggaccattctttac 9136  T
Q  319 tctgccaggctctctattttggtgaatgcaaaagcggtgggctttttctcttgttctcgtggtgttcgacaaggagaccccttgtcccctcttc 412  Q
    ||| || ||||||||||||||||||||||||||  |||||||||||||||||| ||| |||||||||||||||| |||||||||||||| ||||    
T  9135 tcttcccggctctctattttggtgaatgcaaaactggtgggctttttctcttgctcttgtggtgttcgacaaggggaccccttgtccccccttc 9042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 331 - 398
Target Start/End: Complemental strand, 10708497 - 10708430
Alignment:
Q  331 tctattttggtgaatgcaaaagcggtgggctttttctcttgttctcgtggtgttcgacaaggagaccc 398  Q
    ||||||||||||||||  || || ||||| |||||||||||||||||| |||| |||||||| |||||    
T  10708497 tctattttggtgaatggtaaggcagtgggttttttctcttgttctcgtagtgtccgacaaggtgaccc 10708430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 331 - 398
Target Start/End: Complemental strand, 10922267 - 10922200
Alignment:
Q  331 tctattttggtgaatgcaaaagcggtgggctttttctcttgttctcgtggtgttcgacaaggagaccc 398  Q
    ||||||||||||||||  || || ||||| |||||||||||||||||| |||| |||||||| |||||    
T  10922267 tctattttggtgaatggtaaggcagtgggttttttctcttgttctcgtagtgtccgacaaggtgaccc 10922200  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 328 - 398
Target Start/End: Original strand, 44377844 - 44377914
Alignment:
Q  328 ctctctattttggtgaatgcaaaagcggtgggctttttctcttgttctcgtggtgttcgacaaggagaccc 398  Q
    |||||||||||||||||||  ||||||||||| || |||||||||   ||||||||||| |||||||||||    
T  44377844 ctctctattttggtgaatggcaaagcggtgggtttcttctcttgtgtccgtggtgttcgtcaaggagaccc 44377914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 328 - 398
Target Start/End: Original strand, 44393424 - 44393494
Alignment:
Q  328 ctctctattttggtgaatgcaaaagcggtgggctttttctcttgttctcgtggtgttcgacaaggagaccc 398  Q
    |||||||||||||||||||  ||||||||||| || |||||||||   ||||||||||| |||||||||||    
T  44393424 ctctctattttggtgaatggcaaagcggtgggtttcttctcttgtgtccgtggtgttcgtcaaggagaccc 44393494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 322 - 398
Target Start/End: Complemental strand, 41247957 - 41247881
Alignment:
Q  322 gccaggctctctattttggtgaatgcaaaagcggtgggctttttctcttgttctcgtggtgttcgacaaggagaccc 398  Q
    |||||||| ||||||||||||||||  ||  | ||||| |||||||||||||||||||||||  ||||||| |||||    
T  41247957 gccaggctttctattttggtgaatggtaagacagtgggttttttctcttgttctcgtggtgtctgacaaggtgaccc 41247881  T

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Target: scaffold0093 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0093
Description:

Target: scaffold0093; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 331 - 398
Target Start/End: Original strand, 13658 - 13725
Alignment:
Q  331 tctattttggtgaatgcaaaagcggtgggctttttctcttgttctcgtggtgttcgacaaggagaccc 398  Q
    |||||||| ||||||| ||| || ||||| ||||||||||| ||||||||||| |  |||||||||||    
T  13658 tctattttagtgaatggaaaggcagtgggttttttctcttgctctcgtggtgtgcatcaaggagaccc 13725  T

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