View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2668_low_20 (Length: 227)
Name: NF2668_low_20
Description: NF2668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2668_low_20 |
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Alignment Details
Target: chr5 (Bit Score: 174; Significance: 9e-94; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 1 - 206
Target Start/End: Complemental strand, 42010570 - 42010365
Alignment:
| Q |
1 |
tcacaaaggagcctcacctggaaggtaagaaggaagtcctctctcaacctgcaagnnnnnnnncctaggaaaaaagctactaatactaggcaatagaatt |
100 |
Q |
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| T |
42010570 |
tcacaaaggagtctcacctggaaggtaagaaggaagtcctctctcaacctgcaagctttttttcctaggaaaaaagctactaatactaggcaatagaatt |
42010471 |
T |
|
| Q |
101 |
ttcttccctttttccaacttcctcgcctccatgttttgtggaagtgaatgctgcttttgaatcttgtaaagctgaggagataaacgtgatgaagacgatg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
42010470 |
ttcttccctttttccaacttcctcgcctccatgttttgtggaagtgaatgctgcttttgaatcttgtaaagccgaggagataaacgtgatgaagacgatg |
42010371 |
T |
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| Q |
201 |
atgatg |
206 |
Q |
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|||||| |
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| T |
42010370 |
atgatg |
42010365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 155; Significance: 2e-82; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 1 - 199
Target Start/End: Complemental strand, 1245908 - 1245710
Alignment:
| Q |
1 |
tcacaaaggagcctcacctggaaggtaagaaggaagtcctctctcaacctgcaagnnnnnnnncctaggaaaaaagctactaatactaggcaatagaatt |
100 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||| |
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| T |
1245908 |
tcacaaaggagtctcacctggaaggtaagaaggaagtcctctctcaacctgcaagctttttttcctaggaaaaaggctactaatactaggcattagaatt |
1245809 |
T |
|
| Q |
101 |
ttcttccctttttccaacttcctcgcctccatgttttgtggaagtgaatgctgcttttgaatcttgtaaagctgaggagataaacgtgatgaagacgat |
199 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
1245808 |
ttcttccctttatccaacttcctcgcctccatgttttgtggaagtgaatgctgcttttgaatcttgtaaagccgaggagataaacgtgatgaagacgat |
1245710 |
T |
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