View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2668_low_3 (Length: 424)
Name: NF2668_low_3
Description: NF2668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2668_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 374; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 30 - 411
Target Start/End: Complemental strand, 3215424 - 3215043
Alignment:
| Q |
30 |
cctttggcagtggatatcagtataaagcctgctcaaataacattcactgagaagaagcaaaaagttacatactcggttgcttttacacccgaaaacttag |
129 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
3215424 |
cctttggctgtggatatcagtataaagcctgctcaaataacattcactgagaagaagcaaaaagttacatactcggttgcttttacacccgaaaacatag |
3215325 |
T |
|
| Q |
130 |
tgaatagaggtgataaggaaatttctcagggatctatcaagtgggtttctggaaagtataccgttagaatccctatatctgtcatttttgtgtgaaaatt |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3215324 |
tgaatagaggtgataaggaaatttctcagggatctatcaagtgggtttctggaaagtataccgttagaatccctatatctgtcatttttgtgtgaaaatt |
3215225 |
T |
|
| Q |
230 |
tggcaaaagaaattaatcatagcatgatactattatattaaggaataaatgtaagtattgaagagtatgaaaacgtgcattgtaatcttcgagcttactt |
329 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3215224 |
tggcaaaagaaattaatcatagcatgatactattatattaaggaataaatgtaagtattgaagagtatgaaaacgtgcattgtaatcttcgagcttactt |
3215125 |
T |
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| Q |
330 |
caatgaaatttaagccaaactctcttaatagttacaatgaaattatgggtcttacgtaatttaaatcctttggtaatctcct |
411 |
Q |
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| T |
3215124 |
caatgaaatttaagccaaactctcttaatagttacaatgaaattatgggtcttacgtaatttaaatcctttggtaatctcct |
3215043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 61 - 279
Target Start/End: Complemental strand, 3201483 - 3201265
Alignment:
| Q |
61 |
ctcaaataacattcactgagaagaagcaaaaagttacatactcggttgcttttacacccgaaaacttagtgaatagaggtgataaggaaatttctcaggg |
160 |
Q |
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|||||||||||||||| ||| ||||||||| || ||||| | ||||| ||||| ||| ||| || || ||||||||||||||| ||| |||| || |
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| T |
3201483 |
ctcaaataacattcaccgaggtgaagcaaaaggtaacatattgggttgattttatacctgaagacaaagagaatagaggtgataactttattgctcaagg |
3201384 |
T |
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| Q |
161 |
atctatcaagtgggtttctggaaagtataccgttagaatccctatatctgtcatttttgtgtgaaaatttggcaaaagaaattaatcatagcatgatact |
260 |
Q |
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||||||||||||| |||||| ||||||| | ||||| || ||||| ||||| | ||||||||||||| |||||||| |||||||| | ||||||| | | |
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| T |
3201383 |
atctatcaagtggatttctgcaaagtattctgttagcattcctattgctgtcgtatttgtgtgaaaatgtggcaaaataaattaattagagcatgacatt |
3201284 |
T |
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| Q |
261 |
attatattaaggaataaat |
279 |
Q |
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||||| ||||||||||||| |
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| T |
3201283 |
attatgttaaggaataaat |
3201265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 30 - 205
Target Start/End: Complemental strand, 3207488 - 3207313
Alignment:
| Q |
30 |
cctttggcagtggatatcagtataaagcctgctcaaataacattcactgagaagaagcaaaaagttacatactcggttgcttttacacccgaaaacttag |
129 |
Q |
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||||||||||| | ||| ||| ||| ||| | ||||||||||||||||||| ||||||||| || ||||| | ||||| ||||| ||| ||| | || |
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| T |
3207488 |
cctttggcagtaggtatgagtgtaaggccatcacaaataacattcactgagatgaagcaaaaggtaacatattgggttgattttatacctgaagataaag |
3207389 |
T |
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| Q |
130 |
tgaatagaggtgataaggaaatttctcagggatctatcaagtgggtttctggaaagtataccgttagaatccctat |
205 |
Q |
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||||||||||||||| ||| |||| || |||||||| |||||||||| ||||||| | ||||| || ||||| |
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| T |
3207388 |
agaatagaggtgataactttattgctcaaggctctatcaaatgggtttctgcaaagtattctgttagcattcctat |
3207313 |
T |
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