View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2668_low_9 (Length: 293)

Name: NF2668_low_9
Description: NF2668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2668_low_9
NF2668_low_9
[»] chr4 (4 HSPs)
chr4 (144-275)||(42575806-42575937)
chr4 (144-227)||(53218677-53218762)
chr4 (144-227)||(37149135-37149220)
chr4 (165-227)||(8111894-8111958)
[»] chr3 (3 HSPs)
chr3 (30-87)||(45818717-45818774)
chr3 (146-228)||(41240213-41240296)
chr3 (30-65)||(39795354-39795389)
[»] chr8 (3 HSPs)
chr8 (144-227)||(13319048-13319132)
chr8 (168-238)||(11465293-11465364)
chr8 (165-227)||(4805834-4805898)
[»] chr7 (4 HSPs)
chr7 (36-87)||(2334110-2334161)
chr7 (36-94)||(23319059-23319117)
chr7 (30-92)||(30793427-30793494)
chr7 (30-90)||(7667378-7667438)
[»] chr1 (6 HSPs)
chr1 (165-233)||(15224839-15224909)
chr1 (30-96)||(42472108-42472174)
chr1 (30-94)||(12855350-12855414)
chr1 (169-227)||(16870808-16870867)
chr1 (36-95)||(19806879-19806938)
chr1 (36-85)||(26793702-26793751)
[»] chr5 (3 HSPs)
chr5 (144-223)||(29835061-29835142)
chr5 (144-210)||(15680780-15680847)
chr5 (36-84)||(15416347-15416395)
[»] chr2 (1 HSPs)
chr2 (30-86)||(40054578-40054634)


Alignment Details
Target: chr4 (Bit Score: 73; Significance: 2e-33; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 144 - 275
Target Start/End: Original strand, 42575806 - 42575937
Alignment:
Q  144 agaaattttgacttgtgggaccaagattttatataataa-tatttatacaattttttaacaatgcaaaagtgataaaataataacggctatatacccctg 242  Q
    ||||||||| ||||| |||  ||| |||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||     
T  42575806 agaaattttaacttgcgggggcaaaattttatataataaatatttatacaaatttttaacaatgcaaaagtgataaaataataacggctatata-cccta 42575904  T
Q  243 taaataacacaacggctatttccttttatacca 275  Q
    | ||||| |||||||||||||| ||| ||||||    
T  42575905 tgaataaaacaacggctatttcttttcatacca 42575937  T

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Target: chr4; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 144 - 227
Target Start/End: Original strand, 53218677 - 53218762
Alignment:
Q  144 agaaattttgacttgtgggaccaagattttatataat-aatatttatac-aattttttaacaatgcaaaagtgataaaataataac 227  Q
    |||||||||||||||||||| ||||||||||||  || ||||||||||| ||  ||||| ||||||||||||||||||||||||||    
T  53218677 agaaattttgacttgtgggagcaagattttataagataaatatttatacaaaaattttagcaatgcaaaagtgataaaataataac 53218762  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 144 - 227
Target Start/End: Complemental strand, 37149220 - 37149135
Alignment:
Q  144 agaaattttgacttgtgggaccaagattttatataataa-tatttatacaa-ttttttaacaatgcaaaagtgataaaataataac 227  Q
    ||||||||| ||||||||    ||||||||||||||||| ||||| ||||| |||||||  ||||| |||||||||||||||||||    
T  37149220 agaaatttttacttgtggaggaaagattttatataataaatatttctacaaattttttagtaatgcgaaagtgataaaataataac 37149135  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 165 - 227
Target Start/End: Complemental strand, 8111958 - 8111894
Alignment:
Q  165 caagattttatataataa-tatttatacaa-ttttttaacaatgcaaaagtgataaaataataac 227  Q
    ||||||||||||| |||| || ||||| || ||||||| ||||||||||||||||||||||||||    
T  8111958 caagattttatatgataaatacttatagaaattttttagcaatgcaaaagtgataaaataataac 8111894  T

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Target: chr3 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 30 - 87
Target Start/End: Original strand, 45818717 - 45818774
Alignment:
Q  30 ttaagtaggatatgatagtgttatcatatcaggtcttcttatcatccgcaccaaacgg 87  Q
    ||||||||||||||||||||||||||||||  ||||||||||| | ||||||||||||    
T  45818717 ttaagtaggatatgatagtgttatcatatcctgtcttcttatccttcgcaccaaacgg 45818774  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 146 - 228
Target Start/End: Original strand, 41240213 - 41240296
Alignment:
Q  146 aaattttgacttgtgggaccaagattttatataataa-tatttatacaattttttaacaatgcaaaagtgataaaataataacg 228  Q
    |||||||||||||||||  | ||||| |||||||||| |||||||||||  ||||| |||||   |||||||||||||||||||    
T  41240213 aaattttgacttgtgggggcgagattatatataataaatatttatacaaaattttagcaatgtgtaagtgataaaataataacg 41240296  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 30 - 65
Target Start/End: Original strand, 39795354 - 39795389
Alignment:
Q  30 ttaagtaggatatgatagtgttatcatatcaggtct 65  Q
    ||||||||||||||||||||||||||||||| ||||    
T  39795354 ttaagtaggatatgatagtgttatcatatcatgtct 39795389  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 144 - 227
Target Start/End: Complemental strand, 13319132 - 13319048
Alignment:
Q  144 agaaattttgacttgtgggaccaagattttatataataa-tatttataca-attttttaacaatgcaaaagtgataaaataataac 227  Q
    ||||||||||||||| ||| | |||||||| ||| |||| |||||||||| | |||||| ||||||||||||||||||||||||||    
T  13319132 agaaattttgacttgcggggc-aagattttgtatgataaatatttatacatagtttttagcaatgcaaaagtgataaaataataac 13319048  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 168 - 238
Target Start/End: Complemental strand, 11465364 - 11465293
Alignment:
Q  168 gattttatataataa-tatttatacaattttttaacaatgcaaaagtgataaaataataacggctatatacc 238  Q
    |||||||||| |||| |||||||||||  |||||||||||||| ||||||||||| ||| |  |||||||||    
T  11465364 gattttatatgataaatatttatacaaacttttaacaatgcaagagtgataaaatgatatcaactatatacc 11465293  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 165 - 227
Target Start/End: Original strand, 4805834 - 4805898
Alignment:
Q  165 caagattttatataataa-tatttatacaatt-ttttaacaatgcaaaagtgataaaataataac 227  Q
    |||||||| |||| |||| |||||||||||   ||||| ||||||||||||||||||||||||||    
T  4805834 caagatttcatatgataaatatttatacaaaaattttagcaatgcaaaagtgataaaataataac 4805898  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 36 - 87
Target Start/End: Original strand, 2334110 - 2334161
Alignment:
Q  36 aggatatgatagtgttatcatatcaggtcttcttatcatccgcaccaaacgg 87  Q
    ||||||||||||||||||||||||| |||| |||||||| |||| |||||||    
T  2334110 aggatatgatagtgttatcatatcatgtctccttatcatgcgcatcaaacgg 2334161  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 36 - 94
Target Start/End: Original strand, 23319059 - 23319117
Alignment:
Q  36 aggatatgatagtgttatcatatcaggtcttcttatcatccgcaccaaacgggccgtaa 94  Q
    ||||||||||||||||||||||||  ||||||||||||| || ||||| ||| ||||||    
T  23319059 aggatatgatagtgttatcatatcctgtcttcttatcatgcgtaccaagcggaccgtaa 23319117  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 30 - 92
Target Start/End: Complemental strand, 30793494 - 30793427
Alignment:
Q  30 ttaagtaggatatgatagtgttatcatatcag-----gtcttcttatcatccgcaccaaacgggccgt 92  Q
    |||||||||||||||||||||||||||||||      ||||||||||||| |||| ||||||| ||||    
T  30793494 ttaagtaggatatgatagtgttatcatatcatatcatgtcttcttatcatacgcatcaaacggaccgt 30793427  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 30 - 90
Target Start/End: Complemental strand, 7667438 - 7667378
Alignment:
Q  30 ttaagtaggatatgatagtgttatcatatcaggtcttcttatcatccgcaccaaacgggcc 90  Q
    ||||||||| ||| || ||||||||||||||  |||||||||| |  ||||||||||||||    
T  7667438 ttaagtaggttataattgtgttatcatatcatatcttcttatcttgtgcaccaaacgggcc 7667378  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 165 - 233
Target Start/End: Complemental strand, 15224909 - 15224839
Alignment:
Q  165 caagattttatataataa-tatttatacaa-ttttttaacaatgcaaaagtgataaaataataacggctat 233  Q
    |||||||||||||||||| |||||| |||| ||||||| |||  |||||| ||||||||||||||||||||    
T  15224909 caagattttatataataaatatttaaacaaattttttagcaacacaaaagagataaaataataacggctat 15224839  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 30 - 96
Target Start/End: Original strand, 42472108 - 42472174
Alignment:
Q  30 ttaagtaggatatgatagtgttatcatatcaggtcttcttatcatccgcaccaaacgggccgtaatg 96  Q
    ||||||||||||||| |||||||||||||   ||||||||||| | ||||||||||| ||| |||||    
T  42472108 ttaagtaggatatgacagtgttatcatattctgtcttcttatcctgcgcaccaaacgagccataatg 42472174  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 94
Target Start/End: Original strand, 12855350 - 12855414
Alignment:
Q  30 ttaagtaggatatgatagtgttatcatatcaggtcttcttatcatccgcaccaaacgggccgtaa 94  Q
    |||| |||||||||||| || |||||||||  |||| ||||||||  ||||||||||||||||||    
T  12855350 ttaaataggatatgataatgatatcatatcctgtctccttatcatgtgcaccaaacgggccgtaa 12855414  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 169 - 227
Target Start/End: Complemental strand, 16870867 - 16870808
Alignment:
Q  169 attttatataataa-tatttatacaattttttaacaatgcaaaagtgataaaataataac 227  Q
    ||||||||| |||| |||||||||||  ||||| |||||||||||| |||||||||||||    
T  16870867 attttatatgataaatatttatacaaaattttagcaatgcaaaagtaataaaataataac 16870808  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 36 - 95
Target Start/End: Original strand, 19806879 - 19806938
Alignment:
Q  36 aggatatgatagtgttatcatatcaggtcttcttatcatccgcaccaaacgggccgtaat 95  Q
    |||||| |||||||||||||||||   ||| ||||||||  |||||||||||||||||||    
T  19806879 aggataggatagtgttatcatatcctatctccttatcatgtgcaccaaacgggccgtaat 19806938  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 85
Target Start/End: Complemental strand, 26793751 - 26793702
Alignment:
Q  36 aggatatgatagtgttatcatatcaggtcttcttatcatccgcaccaaac 85  Q
    |||||||||||||  |||||||||| |||||||||||||  |||||||||    
T  26793751 aggatatgatagttctatcatatcatgtcttcttatcatgtgcaccaaac 26793702  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 144 - 223
Target Start/End: Complemental strand, 29835142 - 29835061
Alignment:
Q  144 agaaattttgacttgtgggaccaagattttatataataa-tatttatac-aattttttaacaatgcaaaagtgataaaataa 223  Q
    |||||| |||| |||||||  ||||||||||||| |||| ||||||||  || |||||| ||||||||||||||||||||||    
T  29835142 agaaatgttgatttgtgggggcaagattttatatgataaatatttatagtaaatttttagcaatgcaaaagtgataaaataa 29835061  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 144 - 210
Target Start/End: Original strand, 15680780 - 15680847
Alignment:
Q  144 agaaattttgacttgtgggaccaagattttatataataa-tatttatacaattttttaacaatgcaaa 210  Q
    ||||||||| ||||| |||  ||| |||||||||||||| ||||||||||| |||||| |||||||||    
T  15680780 agaaattttaacttgcggggacaaaattttatataataaatatttatacaaatttttagcaatgcaaa 15680847  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 36 - 84
Target Start/End: Original strand, 15416347 - 15416395
Alignment:
Q  36 aggatatgatagtgttatcatatcaggtcttcttatcatccgcaccaaa 84  Q
    ||||||||||||| ||||||||||| |||||| ||||||  ||||||||    
T  15416347 aggatatgatagttttatcatatcatgtcttcctatcatgtgcaccaaa 15416395  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 30 - 86
Target Start/End: Original strand, 40054578 - 40054634
Alignment:
Q  30 ttaagtaggatatgatagtgttatcatatcaggtcttcttatcatccgcaccaaacg 86  Q
    |||| |||||||| ||||||||||||||||| ||||  ||||||| |||| ||||||    
T  40054578 ttaaataggatataatagtgttatcatatcatgtctcgttatcatgcgcatcaaacg 40054634  T

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