View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2669_high_1 (Length: 632)

Name: NF2669_high_1
Description: NF2669
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2669_high_1
NF2669_high_1
[»] chr4 (24 HSPs)
chr4 (79-616)||(3816415-3816954)
chr4 (79-616)||(3808839-3809371)
chr4 (94-616)||(3985821-3986353)
chr4 (94-612)||(4001127-4001660)
chr4 (155-616)||(3800482-3800946)
chr4 (480-616)||(3920510-3920646)
chr4 (99-339)||(3956520-3956760)
chr4 (86-262)||(4024013-4024189)
chr4 (480-615)||(4024454-4024589)
chr4 (474-616)||(3956254-3956396)
chr4 (94-344)||(3933996-3934252)
chr4 (94-262)||(4217452-4217620)
chr4 (94-260)||(3920865-3921031)
chr4 (480-616)||(3933734-3933867)
chr4 (474-613)||(4009212-4009351)
chr4 (85-202)||(4008825-4008942)
chr4 (474-613)||(4217856-4217995)
chr4 (480-616)||(3964033-3964166)
chr4 (302-344)||(3920775-3920817)
chr4 (280-344)||(4009029-4009093)
chr4 (104-168)||(4017510-4017574)
chr4 (102-168)||(3964730-3964796)
chr4 (558-616)||(4018017-4018075)
chr4 (280-339)||(4217647-4217706)
[»] chr5 (2 HSPs)
chr5 (99-380)||(13396800-13397087)
chr5 (435-616)||(13397124-13397305)
[»] chr6 (4 HSPs)
chr6 (35-79)||(27682682-27682726)
chr6 (37-79)||(27690003-27690045)
chr6 (37-79)||(30230240-30230282)
chr6 (35-79)||(13143892-13143937)
[»] chr2 (2 HSPs)
chr2 (35-79)||(31712534-31712578)
chr2 (35-79)||(39156533-39156577)
[»] chr8 (1 HSPs)
chr8 (480-612)||(7074733-7074865)
[»] chr3 (1 HSPs)
chr3 (481-549)||(23454238-23454306)


Alignment Details
Target: chr4 (Bit Score: 394; Significance: 0; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 79 - 616
Target Start/End: Original strand, 3816415 - 3816954
Alignment:
Q  79 taatttggaagataaatatccaattacctgcactccacaccaaagcttttcaaatagactatatgacaagtccaatataacaagattctctgaagaaaaa 178  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| |||||||||||||||||||||||||| || ||||||     
T  3816415 taatttggaagataaatatccaattacctgcactccacaccaaagcttttccactagactatctgacaagtccaatataacaagattctttgcagaaaac 3816514  T
Q  179 ttctctgggaatgattttagagggcagtatgtccaatgaagatattttataccaagtggaaaagattgaagcccttgaggaaga--caatc-aaaacctt 275  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |   |||| ||||||||    
T  3816515 ttctctgggaatgattttagagggcagtatgtccaatgaagatattttataccaagtggaaaagattgaagcccttgaggaaaaacaaatcaaaaacctt 3816614  T
Q  276 ccataccaagaaaatac-aaaaaccgcaggttggtcatcttatc-aaatacatgacggcttaactttagctccctcattgttggcaaacttatgcttcta 373  Q
    | ||||||  ||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  3816615 ctataccaccaaaatacaaaaaaccgcaggttggtcatcttatcaaaatacatgacggcttaacttcagctccctcattgttggcaaacttatgcttcta 3816714  T
Q  374 atagcattggtaacctgcagtcatgaaagtaaaataaaacattaaaatctttgaaaggcacatttttaaccaacatgacaaatattaatctaaaaatgac 473  Q
    |||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||    
T  3816715 atagcattggtaccctgcaatcatgaaagtaaaataaaacattaaaatctttgaaaggcacatttttaatcgacatgacaaatattaatctaaaaatgac 3816814  T
Q  474 atattttttaccttgtcatttttcaatacatcataaatttcatctggattccataatcgactgcgtttttcagggtgttctctagattcttggcgaacta 573  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| || ||   || ||||||||||| ||||| |    
T  3816815 atattttttaccttgtcatttttcaatacatcataaatttcatcaggattccataatcgactgcgttttccaagg---tcactagattcttgccgaacaa 3816911  T
Q  574 cctcccgacccatttcttgtagaatgtcatgcatagatataac 616  Q
     ||||| |||||||||||| |||||||||||||||||||||||    
T  3816912 tctcccaacccatttcttgaagaatgtcatgcatagatataac 3816954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 79 - 616
Target Start/End: Original strand, 3808839 - 3809371
Alignment:
Q  79 taatttggaagataaatatccaattacctgcactccacaccaaagcttttcaaatagactatatgacaagtccaatataacaagattctctgaagaaaaa 178  Q
    |||||||||||| |  |||||||||||||||||||||| |||||||||||| | |  |||||   |||||| |||||||||||||||||||| ||||||     
T  3808839 taatttggaagacacgtatccaattacctgcactccacgccaaagcttttccattttactatcatacaagttcaatataacaagattctctgcagaaaag 3808938  T
Q  179 ttctctgggaatgattttagagggcagtatgtccaatgaagatattttataccaagtggaaaagattgaagcccttgaggaagacaatcaaaaccttcca 278  Q
    ||||||||||||||||||||||| || ||  |||||||||||||| ||| |  |  |||||||||||||| || ||||||||||||||  ||||  || |    
T  3808939 ttctctgggaatgattttagaggacaatacatccaatgaagatatcttagattagttggaaaagattgaaacctttgaggaagacaattgaaactatcta 3809038  T
Q  279 taccaagaaaatacaaaaaccgcaggttggtcatcttatcaaatacatgacggcttaactttagctccctcattgttggcaaacttatgcttctaatagc 378  Q
    || ||  |||||||||||| || || ||||||||||||||||||||| || |||||||||  |||| |||||||||| ||| |||||||||||| ||||     
T  3809039 tatcaccaaaatacaaaaatcgaagtttggtcatcttatcaaatacacgagggcttaactcgagcttcctcattgttcgcagacttatgcttcttataga 3809138  T
Q  379 attggtaacctgcagtcatgaaagtaaaataaaacattaaaatctttgaaaggcacatttttaaccaacatgacaaatattaatctaaaaatgacatatt 478  Q
    ||  ||| ||||   ||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| ||| ||||||||||||||| |    
T  3809139 atcagtaccctg---tcatgaaagtaaaataaaacattaaaatctttgaaaggcacctttttaac-aacatgacaaatgtta-tctaaaaatgacatact 3809233  T
Q  479 ttttaccttgtcatttttcaatacatcataaatttcatctggattccataatcgactgcgtttttcagggtgttctctagattcttggcgaactacctcc 578  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3809234 ttttaccttgtcatttttcaatacatcataaatttcatcaggattccataatcgactgcgtttttcagggtgttctctagattcttggcgaactacctcc 3809333  T
Q  579 cgacccatttcttgtagaatgtcatgcatagatataac 616  Q
    ||||||||||||||||||||||||||||||||||||||    
T  3809334 cgacccatttcttgtagaatgtcatgcatagatataac 3809371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 94 - 616
Target Start/End: Original strand, 3985821 - 3986353
Alignment:
Q  94 atatccaattacctgcactccacaccaaagcttttcaaatagactatatgacaagtccaatataacaagattctctgaagaaaaattctctgggaatgat 193  Q
    |||| |||||||||| |||||||||||||||||||| | ||| ||||| |||||||||||||||||||| ||||||| |||||| |||| ||| |||||     
T  3985821 atattcaattacctgtactccacaccaaagcttttctactaggctatacgacaagtccaatataacaagtttctctgcagaaaacttctttggcaatgac 3985920  T
Q  194 tttagagggcagtatgtccaatgaagatattttataccaagtggaaaagattgaagcccttgaggaagacaatcaaaaccttc---------cataccaa 284  Q
    | ||||||| | | |  ||||||||||||| ||| | ||  |||||||| |||||||||||||||||||  ||| ||||  ||         |  ||||     
T  3985921 tctagagggtaatgtacccaatgaagatatcttagatcagttggaaaaggttgaagcccttgaggaagaagatccaaacaatcatgattgtacccaccat 3986020  T
Q  285 gaaaatacaaaaaccgcaggttggtcatcttatcaaatacatgacggcttaactttagctccctcattgttggcaa------acttatgcttctaatagc 378  Q
     ||||| ||||||   |||||| ||||||||| ||||||||| | |||||||||| |||| ||| |||| || |||      || |||||||||||||||    
T  3986021 aaaaatccaaaaatttcaggttcgtcatcttagcaaatacatcagggcttaacttcagcttcctaattgctgacaagtttagacatatgcttctaatagc 3986120  T
Q  379 attggtaacctgcagtcatgaaagtaaaataaaacattaaaatctttgaaaggcacatttttaaccaacatgacaaatattaatctaaaaatgacatatt 478  Q
    ||  ||| ||||   ||||||| | |||| ||||   |||| || ||||||| |||||||| |||||| || |||||| ||| | |||| |||  |||||    
T  3986121 atcagtaccctg---tcatgaatggaaaagaaaattctaaa-tcattgaaagacacattttaaaccaaaataacaaatgtta-tgtaaagatgctatatt 3986215  T
Q  479 ttttaccttgtcatttttcaatacatcataaatttcatctggattccataatcgactgcgtttttcagggtgttctctagattcttggcgaactacctcc 578  Q
    || ||||||||||||||| || |||||  ||||||||||  ||| |||||||||||||||||| |  |||| ||| ||||||||||||||||| ||||||    
T  3986216 ttataccttgtcattttttaagacatcgcaaatttcatcatgatcccataatcgactgcgtttgtttgggtattcactagattcttggcgaacaacctcc 3986315  T
Q  579 cgacccatttcttgtagaatgtcatgcatagatataac 616  Q
    |||||||||||||| |||||||||||||||||||||||    
T  3986316 cgacccatttcttgaagaatgtcatgcatagatataac 3986353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 94 - 612
Target Start/End: Original strand, 4001127 - 4001660
Alignment:
Q  94 atatccaattacctgcactccacaccaaagcttttcaaatagactatatgacaagtccaatataacaagattctctgaagaaaaattctctgggaatgat 193  Q
    |||| ||||||||||||||||||||||||| ||||| | | |||||| ||| |||||||||||||||||||||| |  |||||| |||| ||||||||||    
T  4001127 atattcaattacctgcactccacaccaaagattttccactcgactatgtgaaaagtccaatataacaagattctttccagaaaacttctttgggaatgat 4001226  T
Q  194 tttagagggcagtatgtccaatgaagatattttataccaagtggaaaagattgaagcccttgaggaagacaatcaaaaccttccataccaagaaaataca 293  Q
    ||||||||| | | | |||||  || |||| ||| | ||  ||| ||||||||||||||||||||||||   || ||| | |   ||||||  |||| ||    
T  4001227 tttagagggtaatgtatccaacaaatatatcttagatcagttgggaaagattgaagcccttgaggaagaagttccaaatcgtatttaccaatgaaatcca 4001326  T
Q  294 aaaaccgcaggttggtcatcttatcaaatacatgacggcttaactttagctccctcattgttggcaa------acttatgcttctaatagcattggtaac 387  Q
    || | |||||||||||||||||| ||||||||||| |||||||||| |||| ||| | || || |||      || |||||||||||||||||  ||| |    
T  4001327 aatatcgcaggttggtcatcttagcaaatacatgagggcttaacttcagcttcctaaatgatgacaagtctacacgtatgcttctaatagcatcagtacc 4001426  T
Q  388 ctgcagtcatgaaagtaaaataaaacatta-aaatctttgaaaggcacatttttaaccaacatgacaaatatt------aa---tctaaaaatgacat-- 475  Q
    || |   ||| || |||||| |||| |||| ||||| ||||||| || |||||||||||| |||||| || ||      ||   |||||||| | |||      
T  4001427 ctac---cattaatgtaaaagaaaa-attacaaatcattgaaagccatatttttaaccaaaatgacatatgtttctaaaaagtttctaaaaacgccatta 4001522  T
Q  476 -attttttaccttgtcatttttcaatacatcataaatttcatctggattccataatcgactgcgtttttcagggtgttctctagattcttggcgaactac 574  Q
     |||||||||||||||||||||||||||||   |||| ||||| |||| |||||| ||||| |||||   ||||| ||| ||||||||||||||||| ||    
T  4001523 tattttttaccttgtcatttttcaatacatagcaaatgtcatcaggatcccataaccgacttcgtttactagggtcttcactagattcttggcgaacaac 4001622  T
Q  575 ctcccgacccatttcttgtagaatgtcatgcatagata 612  Q
    |||||||||||||||||||| |||||||||||||||||    
T  4001623 ctcccgacccatttcttgtaaaatgtcatgcatagata 4001660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 155 - 616
Target Start/End: Original strand, 3800482 - 3800946
Alignment:
Q  155 ataacaagattctctgaagaaaaattctctgggaatgattttagagggcagtatgtccaatgaagatattttataccaagtggaaaagattgaagccctt 254  Q
    ||||||||||||| || |||||| |||||||||||||||||||||||| | |   |||||||||||||| ||| | ||  ||||||||||||||||||||    
T  3800482 ataacaagattctttgcagaaaacttctctgggaatgattttagagggtaatgcatccaatgaagatatcttagatcatttggaaaagattgaagccctt 3800581  T
Q  255 gaggaagacaatcaaaaccttccataccaagaaaatacaaaaaccgcaggttggtcatcttatcaaatacatgacggcttaactttagctccctcattgt 354  Q
    ||||||||   || ||| | |   ||||| |||||| |||| | |||| ||||||||||||| ||||||||||| |||||||||| |||| ||| | ||     
T  3800582 gaggaagaagttccaaatcgtatttaccatgaaaatccaaatatcgcaagttggtcatcttagcaaatacatgagggcttaacttcagcttcctaaatga 3800681  T
Q  355 tggcaa------acttatgcttctaatagcattggtaacctgcagtcatgaaagtaaaataaaacattaaaatctttgaaaggcacatttttaaccaaca 448  Q
    || |||      || |||||||||||||||||  ||| ||| |   ||| || |||||| |||| |||  |||| ||||||| || |||||||||||| |    
T  3800682 tgacaagtctacacgtatgcttctaatagcatcagtaccctac---cattaacgtaaaagaaaa-atttcaatcattgaaagccatatttttaaccaaaa 3800777  T
Q  449 tgacaaatattaatctaaaaatgaca--tattttttaccttgtcatttttcaatacatcataaatttcatctggattccataatcgactgcgtttttcag 546  Q
    | ||| || ||| ||| |||  | ||  |||||||||||||||||||||||||||||||||| ||   ||| |||| ||||||  |||||| ||||  ||    
T  3800778 taacatatgtta-tctgaaatagccaaatattttttaccttgtcatttttcaatacatcatagataatatcaggatcccataaatgactgcattttctag 3800876  T
Q  547 ggtgttctctagattcttggcgaactacctcccgacccatttcttgtagaatgtcatgcatagatataac 616  Q
    ||| ||| ||| ||||||||||||| ||||||||||||||||||  ||||||||||||||||||||||||    
T  3800877 ggtcttcactatattcttggcgaacaacctcccgacccatttctcatagaatgtcatgcatagatataac 3800946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 113; E-Value: 7e-57
Query Start/End: Original strand, 480 - 616
Target Start/End: Complemental strand, 3920646 - 3920510
Alignment:
Q  480 tttaccttgtcatttttcaatacatcataaatttcatctggattccataatcgactgcgtttttcagggtgttctctagattcttggcgaactacctccc 579  Q
    ||||||||||||||||||||||||||| |||| |||||   || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3920646 tttaccttgtcatttttcaatacatcacaaatgtcatcaacatcccataatcgactgcgtttttcagggtgttctctagattcttggcgaactacctccc 3920547  T
Q  580 gacccatttcttgtagaatgtcatgcatagatataac 616  Q
    |||||||||||||||||||||||||||||||||||||    
T  3920546 gacccatttcttgtagaatgtcatgcatagatataac 3920510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 99 - 339
Target Start/End: Complemental strand, 3956760 - 3956520
Alignment:
Q  99 caattacctgcactccacaccaaagcttttcaaatagactatatgacaagtccaatataacaagattctctgaagaaaaattctctgggaatgattttag 198  Q
    |||||| |||||||||||||||||| ||||| | ||| |||  ||||| ||||||||||||||||||||||| |||||| ||||||| || |||||||||    
T  3956760 caattatctgcactccacaccaaagtttttccagtaggctacctgacaggtccaatataacaagattctctgcagaaaacttctctgagagtgattttag 3956661  T
Q  199 agggcagtatgtccaatgaagatattttataccaagtggaaaagattgaagcccttgaggaagacaatcaaaaccttccataccaagaaaatacaaaaac 298  Q
    |||| |  || |||||||||||||||||| | ||  |||||||||||||| ||||| ||||| || ||| ||||| || ||  || |||||| |||||||    
T  3956660 agggtaacatatccaatgaagatattttagatcagttggaaaagattgaatcccttcaggaatacgatccaaaccatctatgtcacgaaaatccaaaaac 3956561  T
Q  299 cgcaggttggtcatcttatcaaatacatgacggcttaactt 339  Q
     |||||||||||||||||||||||||||   ||||||||||    
T  3956560 tgcaggttggtcatcttatcaaatacattggggcttaactt 3956520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 86 - 262
Target Start/End: Original strand, 4024013 - 4024189
Alignment:
Q  86 gaagataaatatccaattacctgcactccacaccaaagcttttcaaatagactatatgacaagtccaatataacaagattctctgaagaaaaattctctg 185  Q
    ||||| |||||| || |||||||||||||||||||||||||||| | |||||||| |||||||||||||||||||||||||| || |||||| |||||||    
T  4024013 gaagagaaatattcacttacctgcactccacaccaaagcttttccactagactatctgacaagtccaatataacaagattctttgcagaaaacttctctg 4024112  T
Q  186 ggaatgattttagagggcagtatgtccaatgaagatattttataccaagtggaaaagattgaagcccttgaggaaga 262  Q
    ||||||||||||||||| | |   |||||  ||||||| ||| | ||  ||||||||||||||||||||||||||||    
T  4024113 ggaatgattttagagggtaattcatccaagaaagatatcttagatcagttggaaaagattgaagcccttgaggaaga 4024189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 480 - 615
Target Start/End: Original strand, 4024454 - 4024589
Alignment:
Q  480 tttaccttgtcatttttcaatacatcataaatttcatctggattccataatcgactgcgtttttcagggtgttctctagattcttggcgaactacctccc 579  Q
    |||||||||||||||| |||||||||| |||| |||||  ||| |||||||||||||||||||  ||||| | | ||||||||||||||||| |||||||    
T  4024454 tttaccttgtcattttccaatacatcacaaatgtcatcatgatcccataatcgactgcgttttctagggtctgcactagattcttggcgaacaacctccc 4024553  T
Q  580 gacccatttcttgtagaatgtcatgcatagatataa 615  Q
    ||||||||||||||||||||||||||||||||||||    
T  4024554 gacccatttcttgtagaatgtcatgcatagatataa 4024589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 474 - 616
Target Start/End: Complemental strand, 3956396 - 3956254
Alignment:
Q  474 atattttttaccttgtcatttttcaatacatcataaatttcatctggattccataatcgactgcgtttttcagggtgttctctagattcttggcgaacta 573  Q
    ||||||||||||||||||||||||||||||||||| ||   ||| |||||  |||||||||||| ||||  ||||| ||| || |||||||||||||| |    
T  3956396 atattttttaccttgtcatttttcaatacatcatagataatatcaggattggataatcgactgcattttctagggtcttcactggattcttggcgaacaa 3956297  T
Q  574 cctcccgacccatttcttgtagaatgtcatgcatagatataac 616  Q
    |||||||||||||||||||||||||||||||||| ||||||||    
T  3956296 cctcccgacccatttcttgtagaatgtcatgcatggatataac 3956254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 94 - 344
Target Start/End: Complemental strand, 3934252 - 3933996
Alignment:
Q  94 atatccaattacctgcactccacaccaaagcttttcaaatagactatatgacaagtccaatataacaagattctctgaagaaaaattctctgggaatgat 193  Q
    |||| |||||||||| ||||||||||| |||||||| | | |||||    ||||||||||||||||||||||||||| |||||| |||||||||||||||    
T  3934252 atattcaattacctgtactccacaccatagcttttccattcgactaagatacaagtccaatataacaagattctctgcagaaaacttctctgggaatgat 3934153  T
Q  194 tttagagggcagtatgtccaatgaagatattttataccaagtggaaaagattgaagcccttgaggaagacaatcaaaa---ccttccataccaa---gaa 287  Q
    ||||||||| |  ||  ||||||||||||| | | ||||  ||||||||||| |||||||||||||| |  ||| |||    | || | | |||    ||    
T  3934152 tttagagggtaacatacccaatgaagatatctaagaccagttggaaaagattcaagcccttgaggaaaaagatccaaatagtcatcaaaatcaacccaaa 3934053  T
Q  288 aatacaaaaaccgcaggttggtcatcttatcaaatacatgacggcttaactttagct 344  Q
    ||| ||||||  | ||||||||||||||||||||||||||| |||||||||||||||    
T  3934052 aattcaaaaattggaggttggtcatcttatcaaatacatgagggcttaactttagct 3933996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 94 - 262
Target Start/End: Original strand, 4217452 - 4217620
Alignment:
Q  94 atatccaattacctgcactccacaccaaagcttttcaaatagactatatgacaagtccaatataacaagattctctgaagaaaaattctctgggaatgat 193  Q
    |||| |||||||||| |||||||||||||||||||| | |  ||||||   ||||| |||||||||||||||||||| |||||| |||||||||||||||    
T  4217452 atattcaattacctgtactccacaccaaagcttttccactttactataacgcaagttcaatataacaagattctctgcagaaaagttctctgggaatgat 4217551  T
Q  194 tttagagggcagtatgtccaatgaagatattttataccaagtggaaaagattgaagcccttgaggaaga 262  Q
    ||||||||| |  ||  |||| |||||||| ||| | ||  ||||||||||||||||||| ||||||||    
T  4217552 tttagagggtaacatacccaacgaagatatcttagatcatttggaaaagattgaagccctcgaggaaga 4217620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 94 - 260
Target Start/End: Complemental strand, 3921031 - 3920865
Alignment:
Q  94 atatccaattacctgcactccacaccaaagcttttcaaatagactatatgacaagtccaatataacaagattctctgaagaaaaattctctgggaatgat 193  Q
    |||| |||||||||| ||||||||||| |||||||| | | ||| |    ||||||||||||||||||||||||| | | |||| ||||||| |||||||    
T  3921031 atattcaattacctgtactccacaccatagcttttccattcgaccaagatacaagtccaatataacaagattctcagcaaaaaacttctctgagaatgat 3920932  T
Q  194 tttagagggcagtatgtccaatgaagatattttataccaagtggaaaagattgaagcccttgaggaa 260  Q
    ||||||||| | | | |||||||||||||| ||| ||||  ||||||||||| ||||||||||||||    
T  3920931 tttagagggtaatctatccaatgaagatatcttaaaccagttggaaaagattcaagcccttgaggaa 3920865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 480 - 616
Target Start/End: Complemental strand, 3933867 - 3933734
Alignment:
Q  480 tttaccttgtcatttttcaatacatcataaatttcatctggattccataatcgactgcgtttttcagggtgttctctagattcttggcgaactacctccc 579  Q
    ||||||||||||||||||||||||||| |||| |||||   || |||||||||||||| |||| || |||   | ||||||||||| ||||| |||||||    
T  3933867 tttaccttgtcatttttcaatacatcaaaaatgtcatcaacatcccataatcgactgcattttccaaggt---cactagattcttgccgaacaacctccc 3933771  T
Q  580 gacccatttcttgtagaatgtcatgcatagatataac 616  Q
     |||||||||||| |||||||||||||||||||||||    
T  3933770 aacccatttcttgaagaatgtcatgcatagatataac 3933734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 474 - 613
Target Start/End: Original strand, 4009212 - 4009351
Alignment:
Q  474 atattttttaccttgtcatttttcaatacatcataaatttcatctggattccataatcgactgcgtttttcagggtgttctctagattcttggcgaacta 573  Q
    |||| |||||||||||| ||||||||||||||||| ||   ||| |||| ||||| | |||||| ||||  ||| | ||| ||||||||||  ||||| |    
T  4009212 atatattttaccttgtcgtttttcaatacatcatagataatatcaggatcccatagttgactgcattttataggatcttcactagattcttaacgaacaa 4009311  T
Q  574 cctcccgacccatttcttgtagaatgtcatgcatagatat 613  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  4009312 cctcccgacccatttcttgtagaatgtcatgcatagatat 4009351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 85 - 202
Target Start/End: Original strand, 4008825 - 4008942
Alignment:
Q  85 ggaagataaatatccaattacctgcactccacaccaaagcttttcaaatagactatatgacaagtccaatataacaagattctctgaagaaaaattctct 184  Q
    |||||||| |||  ||||||||| ||||||| ||||||||||||| | | | ||| |||||||||| ||||||||||||||||| | |||||| |||| |    
T  4008825 ggaagatacatagtcaattaccttcactccataccaaagcttttctacttggctaaatgacaagtcaaatataacaagattctccgcagaaaacttcttt 4008924  T
Q  185 gggaatgattttagaggg 202  Q
    || |||||||||||||||    
T  4008925 ggcaatgattttagaggg 4008942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 474 - 613
Target Start/End: Original strand, 4217856 - 4217995
Alignment:
Q  474 atattttttaccttgtcatttttcaatacatcataaatttcatctggattccataatcgactgcgtttttcagggtgttctctagattcttggcgaacta 573  Q
    |||||||||||||||||||||| ||||||||   |||| ||||| |||| |||||| |||||  ||||   ||||| ||   |||||||| ||||||| |    
T  4217856 atattttttaccttgtcattttccaatacatagcaaatgtcatcaggatcccataaccgactttgtttactagggtctttaatagattctaggcgaacaa 4217955  T
Q  574 cctcccgacccatttcttgtagaatgtcatgcatagatat 613  Q
    ||||||||||||| | |||| ||| |||||||||||||||    
T  4217956 cctcccgacccatcttttgttgaaagtcatgcatagatat 4217995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 480 - 616
Target Start/End: Complemental strand, 3964166 - 3964033
Alignment:
Q  480 tttaccttgtcatttttcaatacatcataaatttcatctggattccataatcgactgcgtttttcagggtgttctctagattcttggcgaactacctccc 579  Q
    ||||||||||||||||| ||||| |||||||| |||||   || |||||||||||| ||  || |||||| | | || |||||||||||||| | |||||    
T  3964166 tttaccttgtcattttttaatacttcataaatgtcatc---atcccataatcgactacggcttccagggtctccacttgattcttggcgaacaatctccc 3964070  T
Q  580 gacccatttcttgtagaatgtcatgcatagatataac 616  Q
     |||||| ||||||| |||  ||||||||||||||||    
T  3964069 tacccatgtcttgtataattccatgcatagatataac 3964033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 302 - 344
Target Start/End: Complemental strand, 3920817 - 3920775
Alignment:
Q  302 aggttggtcatcttatcaaatacatgacggcttaactttagct 344  Q
    ||||||||||||||||||||||||||| |||||||||||||||    
T  3920817 aggttggtcatcttatcaaatacatgagggcttaactttagct 3920775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 280 - 344
Target Start/End: Original strand, 4009029 - 4009093
Alignment:
Q  280 accaagaaaatacaaaaaccgcaggttggtcatcttatcaaatacatgacggcttaactttagct 344  Q
    |||| |||||| ||||||  ||||||||||||||||| ||||||||||| |||||||||| ||||    
T  4009029 accatgaaaatccaaaaatagcaggttggtcatcttagcaaatacatgagggcttaacttcagct 4009093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 104 - 168
Target Start/End: Original strand, 4017510 - 4017574
Alignment:
Q  104 acctgcactccacaccaaagcttttcaaatagactatatgacaagtccaatataacaagattctc 168  Q
    ||||||||||||  ||| |||||||||| | ||||||||||||||||||||||||| || |||||    
T  4017510 acctgcactccatgccagagcttttcaactcgactatatgacaagtccaatataacgagtttctc 4017574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 102 - 168
Target Start/End: Complemental strand, 3964796 - 3964730
Alignment:
Q  102 ttacctgcactccacaccaaagcttttcaaatagactatatgacaagtccaatataacaagattctc 168  Q
    ||||||||||||||  ||| || ||||||| | ||||||||||||||||||||||||| || |||||    
T  3964796 ttacctgcactccatgccagagtttttcaactcgactatatgacaagtccaatataacgagtttctc 3964730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 558 - 616
Target Start/End: Original strand, 4018017 - 4018075
Alignment:
Q  558 gattcttggcgaactacctcccgacccatttcttgtagaatgtcatgcatagatataac 616  Q
    |||||||||||||| |  |||| |||||||||||||| |||||||||||| ||||||||    
T  4018017 gattcttggcgaacaatttccctacccatttcttgtataatgtcatgcatggatataac 4018075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 280 - 339
Target Start/End: Original strand, 4217647 - 4217706
Alignment:
Q  280 accaagaaaatacaaaaaccgcaggttggtcatcttatcaaatacatgacggcttaactt 339  Q
    ||||| ||||| ||||||   |||||||||||||||| ||||||||||| ||||||||||    
T  4217647 accaaaaaaattcaaaaatttcaggttggtcatcttagcaaatacatgagggcttaactt 4217706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 97; Significance: 2e-47; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 99 - 380
Target Start/End: Original strand, 13396800 - 13397087
Alignment:
Q  99 caattacctgcactccacaccaaagcttttcaaatagactatatgacaagtccaatataacaagattctctgaagaaaaattctctgggaatgattttag 198  Q
    |||||||||| |||||||||||||||||||| |  || ||||||| |||| ||| |||||||||||| ||   |||||| ||||||||||||||||||||    
T  13396800 caattacctgtactccacaccaaagcttttctacaaggctatatggcaagcccagtataacaagattatcaacagaaaacttctctgggaatgattttag 13396899  T
Q  199 agggcagtatgtccaatgaagatattttataccaagtggaaaagattgaagcccttgaggaagacaatcaaaaccttccataccaagaaaatacaaaaac 298  Q
    |||| | |   |||||| ||||||| ||| | ||  ||||||| ||||||||||||||||||||| ||| ||||| || ||| || |||||||||||||     
T  13396900 agggtaatgcatccaataaagatatcttagatcagttggaaaaaattgaagcccttgaggaagacgatccaaaccgtctatatcatgaaaatacaaaaat 13396999  T
Q  299 cgcaggttggtcatcttatcaaatacatgacggcttaactttagctccctcattgttggcaa------acttatgcttctaatagcat 380  Q
      ||||||||||||||||||||||||| |  |||||||||| |||| ||| |||| || |||      ||||||||||||||||||||    
T  13397000 ttcaggttggtcatcttatcaaatacaggcgggcttaacttcagcttcctaattgctgacaagtctacacttatgcttctaatagcat 13397087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 435 - 616
Target Start/End: Original strand, 13397124 - 13397305
Alignment:
Q  435 atttttaaccaacatgacaaatattaatctaaaaatgacatatttt-ttaccttgtcatttttcaatacatcataaatttcatctggattccataatcga 533  Q
    |||||| ||||| ||||||||| ||| ||||||| || || ||||| ||||||||||||||||||||||||| || ||   ||| |||| ||||||||||    
T  13397124 attttttaccaaaatgacaaatgtta-tctaaaattgccaaatttttttaccttgtcatttttcaatacatcgtagataatatcaggatcccataatcga 13397222  T
Q  534 ctgcgtttttcagggtgttctctagattcttggcgaactacctcccgacccatttcttgtagaatgtcatgcatagatataac 616  Q
    |||| ||||  ||||| ||| ||||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||    
T  13397223 ctgcattttctagggtcttcactagattcttggcgaacaacctcgcgacccatttcctgtagaatgtcatgcatagatataac 13397305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 35 - 79
Target Start/End: Complemental strand, 27682726 - 27682682
Alignment:
Q  35 cagagagagctacgggaggaagagaaagaatgagggaagtgttat 79  Q
    ||||||||||||||||||||| |||||||||||||||||||||||    
T  27682726 cagagagagctacgggaggaaaagaaagaatgagggaagtgttat 27682682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 37 - 79
Target Start/End: Complemental strand, 27690045 - 27690003
Alignment:
Q  37 gagagagctacgggaggaagagaaagaatgagggaagtgttat 79  Q
    ||||||||||||||||||| |||||||||||||||||||||||    
T  27690045 gagagagctacgggaggaaaagaaagaatgagggaagtgttat 27690003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 37 - 79
Target Start/End: Original strand, 30230240 - 30230282
Alignment:
Q  37 gagagagctacgggaggaagagaaagaatgagggaagtgttat 79  Q
    ||||||||||||||||||| |||||||||||||||||||||||    
T  30230240 gagagagctacgggaggaaaagaaagaatgagggaagtgttat 30230282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 35 - 79
Target Start/End: Original strand, 13143892 - 13143937
Alignment:
Q  35 cagagagagctacgggaggaagagaaag-aatgagggaagtgttat 79  Q
    ||||||||||||||||||||| |||||| ||||||| |||||||||    
T  13143892 cagagagagctacgggaggaaaagaaagaaatgaggaaagtgttat 13143937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 35 - 79
Target Start/End: Complemental strand, 31712578 - 31712534
Alignment:
Q  35 cagagagagctacgggaggaagagaaagaatgagggaagtgttat 79  Q
    ||||||||||||||||||||| |||||||||||||||||||||||    
T  31712578 cagagagagctacgggaggaaaagaaagaatgagggaagtgttat 31712534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 35 - 79
Target Start/End: Original strand, 39156533 - 39156577
Alignment:
Q  35 cagagagagctacgggaggaagagaaagaatgagggaagtgttat 79  Q
    ||||||||||||||||||||| |||||||||||||||||||||||    
T  39156533 cagagagagctacgggaggaaaagaaagaatgagggaagtgttat 39156577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 480 - 612
Target Start/End: Original strand, 7074733 - 7074865
Alignment:
Q  480 tttaccttgtcatttttcaatacatcataaatttcatctggattccataatcgactgcgtttttcagggtgttctctagattcttggcgaactacctccc 579  Q
    ||||||||||||| ||||||||||| |||||| ||||| |||| | ||| ||| || || ||| |||| | |||   ||||||||||||||| | |||||    
T  7074733 tttaccttgtcatctttcaatacatgataaatgtcatcaggatccaatagtcggcttcggtttccaggttcttcaacagattcttggcgaacaatctccc 7074832  T
Q  580 gacccatttcttgtagaatgtcatgcatagata 612  Q
     | |  ||||||||| |||||||||||| ||||    
T  7074833 tagctgtttcttgtataatgtcatgcattgata 7074865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 481 - 549
Target Start/End: Original strand, 23454238 - 23454306
Alignment:
Q  481 ttaccttgtcatttttcaatacatcataaatttcatctggattccataatcgactgcgtttttcagggt 549  Q
    |||||||||  ||||||||||||||| | ||||| || | |||||| |||||||| |||||| ||||||    
T  23454238 ttaccttgttttttttcaatacatcagatatttcttcagcattccacaatcgacttcgttttccagggt 23454306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University