View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2669_high_2 (Length: 464)

Name: NF2669_high_2
Description: NF2669
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2669_high_2
NF2669_high_2
[»] chr2 (4 HSPs)
chr2 (10-333)||(5691719-5692044)
chr2 (376-448)||(5691604-5691676)
chr2 (244-318)||(5691316-5691390)
chr2 (78-135)||(5681950-5682007)
[»] chr5 (8 HSPs)
chr5 (244-333)||(11737148-11737237)
chr5 (374-448)||(11737278-11737352)
chr5 (256-333)||(32433747-32433824)
chr5 (376-448)||(32433866-32433938)
chr5 (243-318)||(11737564-11737639)
chr5 (244-319)||(33489980-33490055)
chr5 (374-433)||(33490101-33490161)
chr5 (253-318)||(32434139-32434204)
[»] chr8 (3 HSPs)
chr8 (244-330)||(10207178-10207264)
chr8 (378-448)||(10207060-10207130)
chr8 (244-318)||(10206772-10206846)
[»] chr7 (2 HSPs)
chr7 (243-333)||(42696921-42697011)
chr7 (244-318)||(42696558-42696632)
[»] chr4 (1 HSPs)
chr4 (248-299)||(35446840-35446891)
[»] chr3 (1 HSPs)
chr3 (244-292)||(44785069-44785117)


Alignment Details
Target: chr2 (Bit Score: 287; Significance: 1e-161; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 10 - 333
Target Start/End: Complemental strand, 5692044 - 5691719
Alignment:
Q  10 agattatacttaatgttccgtacaatattatatttatgttaattagaaaaagaaactactaatcatattggttaactaagaaaagaacctattcaaaggt 109  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||    
T  5692044 agataatacttaatgttccgtacaatattatatttatgttaattagaaaaagaaactactaattatattggttacctaagaaaagaacctattcaaaggt 5691945  T
Q  110 tccaaagttcattgaaagaattttcaattcaaaaaagaaactgaaatggagcaactgttgtgt--aaagcaagttcgttattagtagttggagtgaaata 207  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||    
T  5691944 tccaaagttcattgaaagaactttcaattcaaaaaagaaactgaaatggagcaactgttgtgtgtaaagcaagttcgttattagtagttggagtgaaata 5691845  T
Q  208 actcaatctaatcatattcatatcatataaataaatgagaaattcttgtgtagaaacgcacttaacacttgtcatttacaaacaacgaataaaagtgtga 307  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  5691844 actcaatctaatcatattcatatcatataaataaatgagaaattcttgtgtagaaacgcatttaacacttgtcatttacaaacaacgaataaaagtgtga 5691745  T
Q  308 cacgtaattaaatcaagcacatcatt 333  Q
    |||||||||||||  |||||||||||    
T  5691744 cacgtaattaaatggagcacatcatt 5691719  T

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Target: chr2; HSP #2
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 376 - 448
Target Start/End: Complemental strand, 5691676 - 5691604
Alignment:
Q  376 gttccttctctctcccatcatctattttttctggcatatatggttccccaacaatactgctatttaaggaaca 448  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5691676 gttccttctctctcccatcatccattttttctggcatatatggttccccaacaatactgctatttaaggaaca 5691604  T

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Target: chr2; HSP #3
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 244 - 318
Target Start/End: Original strand, 5691316 - 5691390
Alignment:
Q  244 gagaaattcttgtgtagaaacgcacttaacacttgtcatttacaaacaacgaataaaagtgtgacacgtaattaa 318  Q
    ||||||||||||| ||||||||||| |||||||||||||||||||||||||||||| |||||||||| |||||||    
T  5691316 gagaaattcttgtatagaaacgcacctaacacttgtcatttacaaacaacgaataagagtgtgacacataattaa 5691390  T

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Target: chr2; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 78 - 135
Target Start/End: Complemental strand, 5682007 - 5681950
Alignment:
Q  78 tggttaactaagaaaagaacctattcaaaggttccaaagttcattgaaagaattttca 135  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5682007 tggttaactaagaaaagaacctattcaaaggttccaaagttcattgaaagaattttca 5681950  T

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Target: chr5 (Bit Score: 90; Significance: 3e-43; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 244 - 333
Target Start/End: Original strand, 11737148 - 11737237
Alignment:
Q  244 gagaaattcttgtgtagaaacgcacttaacacttgtcatttacaaacaacgaataaaagtgtgacacgtaattaaatcaagcacatcatt 333  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11737148 gagaaattcttgtgtagaaacgcacttaacacttgtcatttacaaacaacgaataaaagtgtgacacgtaattaaatcaagcacatcatt 11737237  T

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Target: chr5; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 374 - 448
Target Start/End: Original strand, 11737278 - 11737352
Alignment:
Q  374 ctgttccttctctctcccatcatctattttttctggcatatatggttccccaacaatactgctatttaaggaaca 448  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11737278 ctgttccttctctctcccatcatctattttttctggcatatatggttccccaacaatactgctatttaaggaaca 11737352  T

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Target: chr5; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 256 - 333
Target Start/End: Original strand, 32433747 - 32433824
Alignment:
Q  256 tgtagaaacgcacttaacacttgtcatttacaaacaacgaataaaagtgtgacacgtaattaaatcaagcacatcatt 333  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| || ||||||||||    
T  32433747 tgtagaaacgcacttaacacttgtcatttacaaacaacgaataagagtgtaacacgtaattaaaacaggcacatcatt 32433824  T

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Target: chr5; HSP #4
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 376 - 448
Target Start/End: Original strand, 32433866 - 32433938
Alignment:
Q  376 gttccttctctctcccatcatctattttttctggcatatatggttccccaacaatactgctatttaaggaaca 448  Q
    |||||||||||||||||||||| |||||||| |||||||||||||||||||||||| ||||||||||||||||    
T  32433866 gttccttctctctcccatcatccattttttcaggcatatatggttccccaacaatattgctatttaaggaaca 32433938  T

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Target: chr5; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 243 - 318
Target Start/End: Complemental strand, 11737639 - 11737564
Alignment:
Q  243 tgagaaattcttgtgtagaaacgcacttaacacttgtcatttacaaacaacgaataaaagtgtgacacgtaattaa 318  Q
    ||||||||||||||||||||||| |  |||||||||||||||||||||||||||||| ||||| |||| |||||||    
T  11737639 tgagaaattcttgtgtagaaacgtatctaacacttgtcatttacaaacaacgaataagagtgtaacacataattaa 11737564  T

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Target: chr5; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 244 - 319
Target Start/End: Original strand, 33489980 - 33490055
Alignment:
Q  244 gagaaattcttgtgtagaaacgcacttaacacttgtcatttacaaacaacgaataaaagtgtgacacgtaattaaa 319  Q
    ||||||||||||||||||||| |||||||||||| ||| ||||||||||||||||| | |||||||| ||||||||    
T  33489980 gagaaattcttgtgtagaaacacacttaacacttatcaattacaaacaacgaataagaatgtgacacataattaaa 33490055  T

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Target: chr5; HSP #7
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 374 - 433
Target Start/End: Original strand, 33490101 - 33490161
Alignment:
Q  374 ctgttccttctctctcccatcatctattttttctggcatatatggtt-ccccaacaatact 433  Q
    |||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||    
T  33490101 ctgttccttctctctcccatcatccattttttctggcatatatggttcccccaacaatact 33490161  T

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Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 253 - 318
Target Start/End: Complemental strand, 32434204 - 32434139
Alignment:
Q  253 ttgtgtagaaacgcacttaacacttgtcatttacaaacaacgaataaaagtgtgacacgtaattaa 318  Q
    ||||||| ||||| |  |||||||||||||||||||| ||||||| | |||||||||| |||||||    
T  32434204 ttgtgtaaaaacgtatctaacacttgtcatttacaaataacgaattagagtgtgacacataattaa 32434139  T

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Target: chr8 (Bit Score: 83; Significance: 4e-39; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 244 - 330
Target Start/End: Complemental strand, 10207264 - 10207178
Alignment:
Q  244 gagaaattcttgtgtagaaacgcacttaacacttgtcatttacaaacaacgaataaaagtgtgacacgtaattaaatcaagcacatc 330  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  10207264 gagaaattcttgtgtagaaacgcacttaacacttgtcatttacaaacaacgaataaaagtgtgacacctaattaaatcaagcacatc 10207178  T

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Target: chr8; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 378 - 448
Target Start/End: Complemental strand, 10207130 - 10207060
Alignment:
Q  378 tccttctctctcccatcatctattttttctggcatatatggttccccaacaatactgctatttaaggaaca 448  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  10207130 tccttctctctcccatcatctattttttctggcatatatggttccccaacaataatgctatttaaggaaca 10207060  T

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Target: chr8; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 244 - 318
Target Start/End: Original strand, 10206772 - 10206846
Alignment:
Q  244 gagaaattcttgtgtagaaacgcacttaacacttgtcatttacaaacaacgaataaaagtgtgacacgtaattaa 318  Q
    |||||||||||||||||||||| |  |||||  ||||||||||||||||||||||| |||||||||| |||||||    
T  10206772 gagaaattcttgtgtagaaacgtatctaacatatgtcatttacaaacaacgaataagagtgtgacacataattaa 10206846  T

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Target: chr7 (Bit Score: 63; Significance: 3e-27; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 243 - 333
Target Start/End: Complemental strand, 42697011 - 42696921
Alignment:
Q  243 tgagaaattcttgtgtagaaacgcacttaacacttgtcatttacaaacaacgaataaaagtgtgacacgtaattaaatcaagcacatcatt 333  Q
    ||||||||||||||||||||||||| |||||| |||||||||||||||||||||||| ||||||||| ||||||||| |  ||||||||||    
T  42697011 tgagaaattcttgtgtagaaacgcatttaacatttgtcatttacaaacaacgaataagagtgtgacatgtaattaaaactggcacatcatt 42696921  T

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Target: chr7; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 244 - 318
Target Start/End: Original strand, 42696558 - 42696632
Alignment:
Q  244 gagaaattcttgtgtagaaacgcacttaacacttgtcatttacaaacaacgaataaaagtgtgacacgtaattaa 318  Q
    ||||||||||||| ||||||||||  ||||||||||||||||||||||||| |||| |||||||||| |||||||    
T  42696558 gagaaattcttgtatagaaacgcatctaacacttgtcatttacaaacaacgcataagagtgtgacacataattaa 42696632  T

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Target: chr4 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 248 - 299
Target Start/End: Complemental strand, 35446891 - 35446840
Alignment:
Q  248 aattcttgtgtagaaacgcacttaacacttgtcatttacaaacaacgaataa 299  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  35446891 aattcttgtgtagaaacgtacttaacacttgtcatttacaaacaacgaataa 35446840  T

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Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 244 - 292
Target Start/End: Original strand, 44785069 - 44785117
Alignment:
Q  244 gagaaattcttgtgtagaaacgcacttaacacttgtcatttacaaacaa 292  Q
    |||||||| | ||||||||||||||||||||||||| ||||||||||||    
T  44785069 gagaaattttagtgtagaaacgcacttaacacttgttatttacaaacaa 44785117  T

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