View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2669_high_5 (Length: 239)
Name: NF2669_high_5
Description: NF2669
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2669_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 44193880 - 44194098
Alignment:
| Q |
1 |
ttgttatacaagctcaagaaactgcaattaaaaaattgaatcaataaataattagtgagtaaaagaattaagtgagagagagaatagaagaagagtaaca |
100 |
Q |
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| T |
44193880 |
ttgttatacaagctcaagaaactgcaattaaaaaattgaatcaataaataattagtgagtaaaagaattaagtgaga--gagaatagaagaagagtaaca |
44193977 |
T |
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| Q |
101 |
cttacttggtgcataagaggccaagggatttttgtttacggtcgtaagtgtggtgtcgtgaaggaggatcggaggaagaagcagccatggatctgaaatt |
200 |
Q |
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| T |
44193978 |
cttacttggtgcataagaggccaagggatttttgtttacggtcgtaagtgtggtgtcgtgaaggaggatcggaggaggaagcagccatggatctgaaatt |
44194077 |
T |
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| Q |
201 |
cgaaatttggagggaagagag |
221 |
Q |
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| T |
44194078 |
cgaaatttggagggaagagag |
44194098 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 106 - 188
Target Start/End: Complemental strand, 52359082 - 52359000
Alignment:
| Q |
106 |
ttggtgcataagaggccaagggatttttgtttacggtcgtaagtgtggtgtcgtgaaggaggatcggaggaagaagcagccat |
188 |
Q |
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| T |
52359082 |
ttggtgcacaagagaccgatggaattttgtttacggtcgtatttgtggcgtcgttaaggaggatcggagaaagaagcaaccat |
52359000 |
T |
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