View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2669_low_3 (Length: 369)

Name: NF2669_low_3
Description: NF2669
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2669_low_3
NF2669_low_3
[»] chr2 (4 HSPs)
chr2 (17-282)||(5691128-5691393)
chr2 (18-139)||(5681545-5681666)
chr2 (317-367)||(5691427-5691477)
chr2 (205-279)||(5691734-5691808)
[»] chr5 (7 HSPs)
chr5 (196-282)||(11737561-11737646)
chr5 (317-367)||(11737478-11737528)
chr5 (317-367)||(32434053-32434103)
chr5 (211-279)||(32433741-32433809)
chr5 (204-279)||(11737147-11737222)
chr5 (205-279)||(33489980-33490054)
chr5 (214-282)||(32434136-32434204)
[»] chr8 (3 HSPs)
chr8 (315-367)||(10206881-10206933)
chr8 (205-282)||(10206772-10206849)
chr8 (204-279)||(10207190-10207265)
[»] chr7 (4 HSPs)
chr7 (205-279)||(42696936-42697010)
chr7 (205-282)||(42696558-42696635)
chr7 (317-367)||(42696644-42696694)
chr7 (231-282)||(43723971-43724022)
[»] chr3 (1 HSPs)
chr3 (203-253)||(44785067-44785117)


Alignment Details
Target: chr2 (Bit Score: 207; Significance: 1e-113; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 17 - 282
Target Start/End: Original strand, 5691128 - 5691393
Alignment:
Q  17 cataggtgtgtggccagattcaaagagcttcagtgataaagggatgggtcctgttccaaagaaatggaaaggagtgtgccaaaatggaacagattttgat 116  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5691128 cataggtgtgtggccagattcaaagagcttcagggataaagggatgggtcctgttccaaagaaatggaaaggagtgtgccaaaatggaacagattttgat 5691227  T
Q  117 tcatctaaatgcaataggtaacaagctg-ttttttaattagtaccatttgaacttctgcacttttcccctagctgtcatattatatttagagaaattttt 215  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| |||| |||||||||||||||||||||||||| ||    
T  5691228 tcatctaaatgcaataggtaacaagctgtttttttaattagtaccatttgaacttctacactttt-ccctggctgtcatattatatttagagaaattctt 5691326  T
Q  216 gtgtagaaacacatctaacatttgttatttacaaacaacgaataagagtgtaacatataattaactt 282  Q
    || ||||||| || |||||| |||| ||||||||||||||||||||||||| ||| |||||||||||    
T  5691327 gtatagaaacgcacctaacacttgtcatttacaaacaacgaataagagtgtgacacataattaactt 5691393  T

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Target: chr2; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 18 - 139
Target Start/End: Original strand, 5681545 - 5681666
Alignment:
Q  18 ataggtgtgtggccagattcaaagagcttcagtgataaagggatgggtcctgttccaaagaaatggaaaggagtgtgccaaaatggaacagattttgatt 117  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| ||||||||||||||||||||||||||||||| ||||||| ||    
T  5681545 ataggtgtgtggccagattcaaagagcttcagtgatgaagggatgggtcctgtgccacagaaatggaaaggagtgtgccaaaatggaactgattttggtt 5681644  T
Q  118 catctaaatgcaataggtaaca 139  Q
    ||||||| ||||||||||||||    
T  5681645 catctaactgcaataggtaaca 5681666  T

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Target: chr2; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 317 - 367
Target Start/End: Original strand, 5691427 - 5691477
Alignment:
Q  317 agagtcctcttttctctttcttccaccgctgtttctctatcttcaaccatt 367  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5691427 agagtcctcttttctctttcttccaccgctgtttctctatcttcaaccatt 5691477  T

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Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 205 - 279
Target Start/End: Complemental strand, 5691808 - 5691734
Alignment:
Q  205 gagaaatttttgtgtagaaacacatctaacatttgttatttacaaacaacgaataagagtgtaacatataattaa 279  Q
    |||||||| |||||||||||| ||| ||||| |||| ||||||||||||||||||| ||||| |||  |||||||    
T  5691808 gagaaattcttgtgtagaaacgcatttaacacttgtcatttacaaacaacgaataaaagtgtgacacgtaattaa 5691734  T

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Target: chr5 (Bit Score: 55; Significance: 2e-22; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 196 - 282
Target Start/End: Complemental strand, 11737646 - 11737561
Alignment:
Q  196 ttatatttagagaaatttttgtgtagaaacacatctaacatttgttatttacaaacaacgaataagagtgtaacatataattaactt 282  Q
    |||||||| |||||||| ||||||||||||  |||||||| |||| ||||||||||||||||||||||||||||| |||||||||||    
T  11737646 ttatattt-gagaaattcttgtgtagaaacgtatctaacacttgtcatttacaaacaacgaataagagtgtaacacataattaactt 11737561  T

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Target: chr5; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 317 - 367
Target Start/End: Complemental strand, 11737528 - 11737478
Alignment:
Q  317 agagtcctcttttctctttcttccaccgctgtttctctatcttcaaccatt 367  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  11737528 agagtcctcttttctctttcttccaccgctttttctctatcttcaaccatt 11737478  T

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Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 317 - 367
Target Start/End: Complemental strand, 32434103 - 32434053
Alignment:
Q  317 agagtcctcttttctctttcttccaccgctgtttctctatcttcaaccatt 367  Q
    |||||||||||||||||||||||||| ||||||||||| ||||||||||||    
T  32434103 agagtcctcttttctctttcttccactgctgtttctctctcttcaaccatt 32434053  T

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Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 211 - 279
Target Start/End: Original strand, 32433741 - 32433809
Alignment:
Q  211 tttttgtgtagaaacacatctaacatttgttatttacaaacaacgaataagagtgtaacatataattaa 279  Q
    ||||| ||||||||| ||  ||||| |||| |||||||||||||||||||||||||||||  |||||||    
T  32433741 tttttttgtagaaacgcacttaacacttgtcatttacaaacaacgaataagagtgtaacacgtaattaa 32433809  T

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Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 204 - 279
Target Start/End: Original strand, 11737147 - 11737222
Alignment:
Q  204 agagaaatttttgtgtagaaacacatctaacatttgttatttacaaacaacgaataagagtgtaacatataattaa 279  Q
    ||||||||| |||||||||||| ||  ||||| |||| ||||||||||||||||||| ||||| |||  |||||||    
T  11737147 agagaaattcttgtgtagaaacgcacttaacacttgtcatttacaaacaacgaataaaagtgtgacacgtaattaa 11737222  T

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Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 205 - 279
Target Start/End: Original strand, 33489980 - 33490054
Alignment:
Q  205 gagaaatttttgtgtagaaacacatctaacatttgttatttacaaacaacgaataagagtgtaacatataattaa 279  Q
    |||||||| |||||||||||||||  ||||| || | | ||||||||||||||||||| ||| ||| ||||||||    
T  33489980 gagaaattcttgtgtagaaacacacttaacacttatcaattacaaacaacgaataagaatgtgacacataattaa 33490054  T

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Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 214 - 282
Target Start/End: Complemental strand, 32434204 - 32434136
Alignment:
Q  214 ttgtgtagaaacacatctaacatttgttatttacaaacaacgaataagagtgtaacatataattaactt 282  Q
    ||||||| ||||  |||||||| |||| ||||||||| ||||||| ||||||| ||| |||||||||||    
T  32434204 ttgtgtaaaaacgtatctaacacttgtcatttacaaataacgaattagagtgtgacacataattaactt 32434136  T

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Target: chr8 (Bit Score: 53; Significance: 2e-21; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 315 - 367
Target Start/End: Original strand, 10206881 - 10206933
Alignment:
Q  315 tcagagtcctcttttctctttcttccaccgctgtttctctatcttcaaccatt 367  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10206881 tcagagtcctcttttctctttcttccaccgctgtttctctatcttcaaccatt 10206933  T

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Target: chr8; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 205 - 282
Target Start/End: Original strand, 10206772 - 10206849
Alignment:
Q  205 gagaaatttttgtgtagaaacacatctaacatttgttatttacaaacaacgaataagagtgtaacatataattaactt 282  Q
    |||||||| ||||||||||||  ||||||||| ||| ||||||||||||||||||||||||| ||| |||||||||||    
T  10206772 gagaaattcttgtgtagaaacgtatctaacatatgtcatttacaaacaacgaataagagtgtgacacataattaactt 10206849  T

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Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 204 - 279
Target Start/End: Complemental strand, 10207265 - 10207190
Alignment:
Q  204 agagaaatttttgtgtagaaacacatctaacatttgttatttacaaacaacgaataagagtgtaacatataattaa 279  Q
    ||||||||| |||||||||||| ||  ||||| |||| ||||||||||||||||||| ||||| |||  |||||||    
T  10207265 agagaaattcttgtgtagaaacgcacttaacacttgtcatttacaaacaacgaataaaagtgtgacacctaattaa 10207190  T

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Target: chr7 (Bit Score: 51; Significance: 4e-20; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 205 - 279
Target Start/End: Complemental strand, 42697010 - 42696936
Alignment:
Q  205 gagaaatttttgtgtagaaacacatctaacatttgttatttacaaacaacgaataagagtgtaacatataattaa 279  Q
    |||||||| |||||||||||| ||| |||||||||| ||||||||||||||||||||||||| |||| |||||||    
T  42697010 gagaaattcttgtgtagaaacgcatttaacatttgtcatttacaaacaacgaataagagtgtgacatgtaattaa 42696936  T

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Target: chr7; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 205 - 282
Target Start/End: Original strand, 42696558 - 42696635
Alignment:
Q  205 gagaaatttttgtgtagaaacacatctaacatttgttatttacaaacaacgaataagagtgtaacatataattaactt 282  Q
    |||||||| |||| ||||||| ||||||||| |||| |||||||||||||| |||||||||| ||| |||||||||||    
T  42696558 gagaaattcttgtatagaaacgcatctaacacttgtcatttacaaacaacgcataagagtgtgacacataattaactt 42696635  T

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Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 317 - 367
Target Start/End: Original strand, 42696644 - 42696694
Alignment:
Q  317 agagtcctcttttctctttcttccaccgctgtttctctatcttcaaccatt 367  Q
    |||||||| |||||||||||||||||| |||||||||| ||||||||||||    
T  42696644 agagtccttttttctctttcttccaccactgtttctctctcttcaaccatt 42696694  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 231 - 282
Target Start/End: Original strand, 43723971 - 43724022
Alignment:
Q  231 taacatttgttatttacaaacaacgaataagagtgtaacatataattaactt 282  Q
    ||||| |||||||||| ||||||| ||||||||||| | |||||||||||||    
T  43723971 taacacttgttatttataaacaacaaataagagtgtcatatataattaactt 43724022  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 203 - 253
Target Start/End: Original strand, 44785067 - 44785117
Alignment:
Q  203 tagagaaatttttgtgtagaaacacatctaacatttgttatttacaaacaa 253  Q
    |||||||||||| |||||||||| ||  ||||| |||||||||||||||||    
T  44785067 tagagaaattttagtgtagaaacgcacttaacacttgttatttacaaacaa 44785117  T

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