View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2670_high_2 (Length: 378)
Name: NF2670_high_2
Description: NF2670
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2670_high_2 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 15 - 378
Target Start/End: Original strand, 51979001 - 51979361
Alignment:
| Q |
15 |
actcgtctgttctacggatacaagaattttcaatgagaattcttaattaaaaggaatgatgctctatgaaatttaagcatttctatatttggatgtcttc |
114 |
Q |
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| T |
51979001 |
actcatctgttctacggatacaagaattttcaatgagaattcttaattaaaaggaatgatgctctatgaaatttaagcatttctatatttggatgtcttc |
51979100 |
T |
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| Q |
115 |
acatccaaataggttaatgttgtgagnnnnnnnncttcttctagacaattgttttcacatgatgattactacatattcaggagatcaattttgtgtgtgc |
214 |
Q |
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| T |
51979101 |
agtt---aataagttaatgttgtgagttttttttcttcttctagacaattgttttcacatgatgattactacatattcaggagatcaattttgtgtgtgc |
51979197 |
T |
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| Q |
215 |
agatctacaatgctccgatcaatgaatgtcaagcaaagcttgtatttaaacctttgacacctgaatggaaatggaagttaatttatgagcccattcagca |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51979198 |
agatctacaatgctccgatcaatgaatgtcaagcaaagcttgtatttaaacctttgacacctgaatggaaatggaagttaatttatgagcccattcagca |
51979297 |
T |
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| Q |
315 |
tgatgttcgcattctctcaaaaaagatcccaattaccagatttgtgaatcttcaggtttgatga |
378 |
Q |
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| T |
51979298 |
tgatgttcgcattctctcaaaaaagatcccaattaccagatttgtgaatcttcaggtttgatga |
51979361 |
T |
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