View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2670_high_3 (Length: 340)
Name: NF2670_high_3
Description: NF2670
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2670_high_3 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 18 - 340
Target Start/End: Original strand, 25528230 - 25528552
Alignment:
| Q |
18 |
atgtttaacaacatctccgagcttatgaactttgatagctatgctggttggtgcaatggttcatcatcaataactgatcaaactttaactaatgatcttt |
117 |
Q |
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| T |
25528230 |
atgtttaacaacatctccgagcttatgaactttgatagctatgctggttggtgcaatggttcatcatcaataactgatcaaactttaactaatgatcttt |
25528329 |
T |
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| Q |
118 |
catcatttgcatatgatggattgaatttatctgaacacataaatggtccattttttatgacagaaattggtggaaattacaatgttatggatagttatga |
217 |
Q |
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| T |
25528330 |
catcatttgcatatgatggattgaatttatctgaacacataaatggtccattttttatgacagaaattggtggaaattacaatgttatggatagttatga |
25528429 |
T |
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| Q |
218 |
tgaaaaagtgctattaaaagaaatggaaactcaacttgagttcttagataataattcaaatgaaacaaataataatttaaattcacaacaaaatggttca |
317 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
25528430 |
tgaaaaagtgctattacaagaaatggaaactcaacttgagttcttagataataattcaaatgaaacaaataataatttagattcacaacaaaatggttca |
25528529 |
T |
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| Q |
318 |
tatgatatgtgcaattacataat |
340 |
Q |
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| T |
25528530 |
tatgatatgtgcaattacataat |
25528552 |
T |
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