View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2670_low_12 (Length: 237)
Name: NF2670_low_12
Description: NF2670
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2670_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 5 - 234
Target Start/End: Complemental strand, 46555386 - 46555157
Alignment:
| Q |
5 |
ctataagcatttccacaaggtaaactaatatgcttgtattccactgagtttaaatcgaaccgggatgctaaattgaagaccagacaaatgatcaaatttg |
104 |
Q |
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| T |
46555386 |
ctatgagcatttccacaaggtaaactaatatgcttgtattccactgagtttaaatcgaaccgggatgctaaattgaagaccagataaatgatcaaatttg |
46555287 |
T |
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| Q |
105 |
aatttgatagtattctgcgactcggagattgtgtattatgcagtcttgaatttcctgtcgatggtttgtttttccatatagttcaatcaagttgatagat |
204 |
Q |
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| T |
46555286 |
aatttgatagcattctgcgactcggagattgtgtattatgcagtcttgaatttcctgtcgatggtttgtttttccatatagttcaatcaagttgatagat |
46555187 |
T |
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| Q |
205 |
tgtcaatggttggtattatgtgaatgatat |
234 |
Q |
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| T |
46555186 |
tgtcaatggttggtattatgtgaatgatat |
46555157 |
T |
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Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 90 - 139
Target Start/End: Complemental strand, 10822256 - 10822207
Alignment:
| Q |
90 |
aaatgatcaaatttgaatttgatagtattctgcgactcggagattgtgta |
139 |
Q |
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| T |
10822256 |
aaatgatcaaatttaaatttgataatattctacgactcggagatggtgta |
10822207 |
T |
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