View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2670_low_2 (Length: 603)
Name: NF2670_low_2
Description: NF2670
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2670_low_2 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 327; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 103 - 576
Target Start/End: Original strand, 1153191 - 1153651
Alignment:
| Q |
103 |
tctaatgatgttactaaatttgagggagcaatttggtatgttttaagttcttaatgtctcaaactgtcatacacttacaaatttaaaacaaaatagttat |
202 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1153191 |
tctaatgacgttactaaatttgagggagcaatttggtattttttaagtttttaatgtctcaaactgtcatacacttacaaatttaaaacaaaatagttat |
1153290 |
T |
|
| Q |
203 |
ttactcagatattccttaatgacttcagctcctctcctatgcatatgatggaaagaaaattaaattaaaataaatataagccttgatgtaattcaactca |
302 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1153291 |
ttactcagatattccttaatgacttcagctcctctcctatgcatatgatggaaagaaaattaaattaaaataaatataagccttgatgtaattcaactca |
1153390 |
T |
|
| Q |
303 |
gataactacattaacacctttgaattgttttctctcttcacattcatgtgcatttagacatgcttcctggattccaagtctgcactagcccaacagtata |
402 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1153391 |
gataactacattaacacctttgaattgttttctctcttcacattcatgtgcatttagacatgcttcctggattccaagtctgcactagcccaacagtata |
1153490 |
T |
|
| Q |
403 |
aataatttttgtttgctagccacttatttnnnnnnnnnnnnnnnnnntcaacattcttctttgatattgtttatgcacagatacatacatgatacatcca |
502 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||| || |
|
|
| T |
1153491 |
aataatttttgtttgctagccacttatttaaaaaaataaaaaataaatcaacattcttctttgatattgattatgcacagatacatacatg-------ca |
1153583 |
T |
|
| Q |
503 |
caagctaacattaaagcatctttttactagactttggcactcaaactcaaagtaaccagattgcagaacattta |
576 |
Q |
| |
|
|||||||||||||||||||| || ||||||| |||| ||| |||||||||| ||||||||||||||| |
|
|
| T |
1153584 |
caagctaacattaaagcatcagattgctagactctggc------actaaaagtaaccaaattgcagaacattta |
1153651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 1153110 - 1153181
Alignment:
| Q |
1 |
aatttaagttttttaacaagtatagttagacaattcacggtatgatttagcattttcagtaatgttattgac |
72 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
1153110 |
aatttaagttttttaacaagtatagttagacaattcacggtatgatttaacattttcagtaatgttattgac |
1153181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 510 - 601
Target Start/End: Original strand, 1153668 - 1153753
Alignment:
| Q |
510 |
acattaaagcatctttttactagactttggcactcaaactcaaagtaaccagattgcagaacatttactgactccaaaatctttttacacta |
601 |
Q |
| |
|
||||||||||||| ||||||||||||||||||| |||||||||| |||||| |||||||| | |||||| ||||||||||||||| |
|
|
| T |
1153668 |
acattaaagcatcagattactagactttggcactc------aaagtaaccaaattgcaaaacatttattaactccagaatctttttacacta |
1153753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University