View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2670_low_5 (Length: 281)

Name: NF2670_low_5
Description: NF2670
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2670_low_5
NF2670_low_5
[»] chr4 (4 HSPs)
chr4 (19-150)||(42575806-42575937)
chr4 (67-150)||(53218677-53218762)
chr4 (67-150)||(37149135-37149220)
chr4 (67-129)||(8111894-8111958)
[»] chr3 (3 HSPs)
chr3 (207-264)||(45818717-45818774)
chr3 (66-148)||(41240213-41240296)
chr3 (229-264)||(39795354-39795389)
[»] chr8 (3 HSPs)
chr8 (67-150)||(13319048-13319132)
chr8 (56-126)||(11465293-11465364)
chr8 (67-129)||(4805834-4805898)
[»] chr7 (4 HSPs)
chr7 (207-258)||(2334110-2334161)
chr7 (200-258)||(23319059-23319117)
chr7 (202-264)||(30793427-30793494)
chr7 (204-264)||(7667378-7667438)
[»] chr1 (6 HSPs)
chr1 (61-129)||(15224839-15224909)
chr1 (198-264)||(42472108-42472174)
chr1 (200-264)||(12855350-12855414)
chr1 (67-125)||(16870808-16870867)
chr1 (199-258)||(19806879-19806938)
chr1 (209-258)||(26793702-26793751)
[»] chr5 (3 HSPs)
chr5 (71-150)||(29835061-29835142)
chr5 (84-150)||(15680780-15680847)
chr5 (210-258)||(15416347-15416395)
[»] chr2 (1 HSPs)
chr2 (208-264)||(40054578-40054634)


Alignment Details
Target: chr4 (Bit Score: 73; Significance: 2e-33; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 19 - 150
Target Start/End: Complemental strand, 42575937 - 42575806
Alignment:
Q  19 tggtataaaaggaaatagccgttgtgttatttacaggggtatatagccgttattattttatcacttttgcattgttaaaaaattgtataaata-ttatta 117  Q
    |||||| ||| |||||||||||||| ||||| | |||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||    
T  42575937 tggtatgaaaagaaatagccgttgttttattcataggg-tatatagccgttattattttatcacttttgcattgttaaaaatttgtataaatatttatta 42575839  T
Q  118 tataaaatcttggtcccacaagtcaaaatttct 150  Q
    |||||||| |||  ||| ||||| |||||||||    
T  42575838 tataaaattttgcccccgcaagttaaaatttct 42575806  T

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Target: chr4; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 67 - 150
Target Start/End: Complemental strand, 53218762 - 53218677
Alignment:
Q  67 gttattattttatcacttttgcattgttaaaaaatt-gtataaatatt-attatataaaatcttggtcccacaagtcaaaatttct 150  Q
    |||||||||||||||||||||||||| |||||  || ||||||||||| ||  |||||||||||| ||||||||||||||||||||    
T  53218762 gttattattttatcacttttgcattgctaaaatttttgtataaatatttatcttataaaatcttgctcccacaagtcaaaatttct 53218677  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 67 - 150
Target Start/End: Original strand, 37149135 - 37149220
Alignment:
Q  67 gttattattttatcacttttgcattgttaaaaaa-ttgtataaata-ttattatataaaatcttggtcccacaagtcaaaatttct 150  Q
    ||||||||||||||||||| |||||  ||||||| ||||| ||||| |||||||||||||||||    |||||||| |||||||||    
T  37149135 gttattattttatcactttcgcattactaaaaaatttgtagaaatatttattatataaaatctttcctccacaagtaaaaatttct 37149220  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 67 - 129
Target Start/End: Original strand, 8111894 - 8111958
Alignment:
Q  67 gttattattttatcacttttgcattgttaaaaaa-ttgtataaata-ttattatataaaatcttg 129  Q
    |||||||||||||||||||||||||| ||||||| || ||||| || |||| |||||||||||||    
T  8111894 gttattattttatcacttttgcattgctaaaaaatttctataagtatttatcatataaaatcttg 8111958  T

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Target: chr3 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 207 - 264
Target Start/End: Complemental strand, 45818774 - 45818717
Alignment:
Q  207 ccgtttggtgcggatgataagaagacctgatatgataacactatcatatcctacttaa 264  Q
    |||||||||||| | |||||||||||  ||||||||||||||||||||||||||||||    
T  45818774 ccgtttggtgcgaaggataagaagacaggatatgataacactatcatatcctacttaa 45818717  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 66 - 148
Target Start/End: Complemental strand, 41240296 - 41240213
Alignment:
Q  66 cgttattattttatcacttttgcattgttaaaaaattgtataaata-ttattatataaaatcttggtcccacaagtcaaaattt 148  Q
    |||||||||||||||||||   ||||| |||||  ||||||||||| |||||||||| ||||| |  |||||||||||||||||    
T  41240296 cgttattattttatcacttacacattgctaaaattttgtataaatatttattatatataatctcgcccccacaagtcaaaattt 41240213  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 229 - 264
Target Start/End: Complemental strand, 39795389 - 39795354
Alignment:
Q  229 agacctgatatgataacactatcatatcctacttaa 264  Q
    |||| |||||||||||||||||||||||||||||||    
T  39795389 agacatgatatgataacactatcatatcctacttaa 39795354  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 67 - 150
Target Start/End: Original strand, 13319048 - 13319132
Alignment:
Q  67 gttattattttatcacttttgcattgttaaaaaat-tgtataaata-ttattatataaaatcttggtcccacaagtcaaaatttct 150  Q
    |||||||||||||||||||||||||| |||||| | |||||||||| |||| ||| |||||||| | ||| |||||||||||||||    
T  13319048 gttattattttatcacttttgcattgctaaaaactatgtataaatatttatcatacaaaatctt-gccccgcaagtcaaaatttct 13319132  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 56 - 126
Target Start/End: Original strand, 11465293 - 11465364
Alignment:
Q  56 ggtatatagccgttattattttatcacttttgcattgttaaaaaattgtataaata-ttattatataaaatc 126  Q
    |||||||||  | ||| ||||||||||| ||||||||||||||  ||||||||||| |||| ||||||||||    
T  11465293 ggtatatagttgatatcattttatcactcttgcattgttaaaagtttgtataaatatttatcatataaaatc 11465364  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 67 - 129
Target Start/End: Complemental strand, 4805898 - 4805834
Alignment:
Q  67 gttattattttatcacttttgcattgttaaaa-aattgtataaata-ttattatataaaatcttg 129  Q
    |||||||||||||||||||||||||| |||||   ||||||||||| |||| |||| ||||||||    
T  4805898 gttattattttatcacttttgcattgctaaaatttttgtataaatatttatcatatgaaatcttg 4805834  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 207 - 258
Target Start/End: Complemental strand, 2334161 - 2334110
Alignment:
Q  207 ccgtttggtgcggatgataagaagacctgatatgataacactatcatatcct 258  Q
    ||||||| |||| |||||||| |||| |||||||||||||||||||||||||    
T  2334161 ccgtttgatgcgcatgataaggagacatgatatgataacactatcatatcct 2334110  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 200 - 258
Target Start/End: Complemental strand, 23319117 - 23319059
Alignment:
Q  200 ttacggcccgtttggtgcggatgataagaagacctgatatgataacactatcatatcct 258  Q
    |||||| ||| ||||| || |||||||||||||  ||||||||||||||||||||||||    
T  23319117 ttacggtccgcttggtacgcatgataagaagacaggatatgataacactatcatatcct 23319059  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 202 - 264
Target Start/End: Original strand, 30793427 - 30793494
Alignment:
Q  202 acggcccgtttggtgcggatgataagaagac-----ctgatatgataacactatcatatcctacttaa 264  Q
    |||| ||||||| |||| |||||||||||||      |||||||||||||||||||||||||||||||    
T  30793427 acggtccgtttgatgcgtatgataagaagacatgatatgatatgataacactatcatatcctacttaa 30793494  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 204 - 264
Target Start/End: Original strand, 7667378 - 7667438
Alignment:
Q  204 ggcccgtttggtgcggatgataagaagacctgatatgataacactatcatatcctacttaa 264  Q
    ||||||||||||||  | ||||||||||  |||||||||||||| || ||| |||||||||    
T  7667378 ggcccgtttggtgcacaagataagaagatatgatatgataacacaattataacctacttaa 7667438  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 61 - 129
Target Start/End: Original strand, 15224839 - 15224909
Alignment:
Q  61 atagccgttattattttatcacttttgcattgttaaaaaa-ttgtataaata-ttattatataaaatcttg 129  Q
    |||||||||||||||||||| ||||||  ||| ||||||| |||| |||||| ||||||||||||||||||    
T  15224839 atagccgttattattttatctcttttgtgttgctaaaaaatttgtttaaatatttattatataaaatcttg 15224909  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 198 - 264
Target Start/End: Complemental strand, 42472174 - 42472108
Alignment:
Q  198 cattacggcccgtttggtgcggatgataagaagacctgatatgataacactatcatatcctacttaa 264  Q
    ||||| ||| ||||||||||| | |||||||||||   ||||||||||||| |||||||||||||||    
T  42472174 cattatggctcgtttggtgcgcaggataagaagacagaatatgataacactgtcatatcctacttaa 42472108  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 200 - 264
Target Start/End: Complemental strand, 12855414 - 12855350
Alignment:
Q  200 ttacggcccgtttggtgcggatgataagaagacctgatatgataacactatcatatcctacttaa 264  Q
    ||||||||||||||||||  |||||||| ||||  ||||||||| || |||||||||||| ||||    
T  12855414 ttacggcccgtttggtgcacatgataaggagacaggatatgatatcattatcatatcctatttaa 12855350  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 67 - 125
Target Start/End: Original strand, 16870808 - 16870867
Alignment:
Q  67 gttattattttatcacttttgcattgttaaaaaattgtataaata-ttattatataaaat 125  Q
    ||||||||||||| |||||||||||| |||||  ||||||||||| |||| |||||||||    
T  16870808 gttattattttattacttttgcattgctaaaattttgtataaatatttatcatataaaat 16870867  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 199 - 258
Target Start/End: Complemental strand, 19806938 - 19806879
Alignment:
Q  199 attacggcccgtttggtgcggatgataagaagacctgatatgataacactatcatatcct 258  Q
    |||||||||||||||||||  |||||||| |||   ||||||||||||||||| ||||||    
T  19806938 attacggcccgtttggtgcacatgataaggagataggatatgataacactatcctatcct 19806879  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 258
Target Start/End: Original strand, 26793702 - 26793751
Alignment:
Q  209 gtttggtgcggatgataagaagacctgatatgataacactatcatatcct 258  Q
    |||||||||  ||||||||||||| ||||||||||  |||||||||||||    
T  26793702 gtttggtgcacatgataagaagacatgatatgatagaactatcatatcct 26793751  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 71 - 150
Target Start/End: Original strand, 29835061 - 29835142
Alignment:
Q  71 ttattttatcacttttgcattgttaaaaaatt-gtataaata-ttattatataaaatcttggtcccacaagtcaaaatttct 150  Q
    |||||||||||||||||||||| |||||| ||  |||||||| |||| |||||||||||||  ||||||| |||| ||||||    
T  29835061 ttattttatcacttttgcattgctaaaaatttactataaatatttatcatataaaatcttgcccccacaaatcaacatttct 29835142  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 84 - 150
Target Start/End: Complemental strand, 15680847 - 15680780
Alignment:
Q  84 tttgcattgttaaaaaattgtataaata-ttattatataaaatcttggtcccacaagtcaaaatttct 150  Q
    ||||||||| |||||| ||||||||||| |||||||||||||| |||  ||| ||||| |||||||||    
T  15680847 tttgcattgctaaaaatttgtataaatatttattatataaaattttgtccccgcaagttaaaatttct 15680780  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 210 - 258
Target Start/End: Complemental strand, 15416395 - 15416347
Alignment:
Q  210 tttggtgcggatgataagaagacctgatatgataacactatcatatcct 258  Q
    ||||||||  |||||| |||||| ||||||||||| |||||||||||||    
T  15416395 tttggtgcacatgataggaagacatgatatgataaaactatcatatcct 15416347  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 208 - 264
Target Start/End: Complemental strand, 40054634 - 40054578
Alignment:
Q  208 cgtttggtgcggatgataagaagacctgatatgataacactatcatatcctacttaa 264  Q
    |||||| |||| |||||||  |||| ||||||||||||||||| |||||||| ||||    
T  40054634 cgtttgatgcgcatgataacgagacatgatatgataacactattatatcctatttaa 40054578  T

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