View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2670_low_6 (Length: 276)
Name: NF2670_low_6
Description: NF2670
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2670_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 232; Significance: 1e-128; HSPs: 13)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 18 - 249
Target Start/End: Complemental strand, 4022808 - 4022577
Alignment:
| Q |
18 |
agaccagaggttgaattaaaagggttaggaatcagccccataaaccactcaacatataggaatctcattcaacaaatgggaattgtttgattatgttaac |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4022808 |
agaccagaggttgaattaaaagggttaggaatcagccccataaaccactcaacatataggaatctcattcaacaaatgggaattgtttgattatgttaac |
4022709 |
T |
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| Q |
118 |
caatggaataggactgtggttagtatccaactgaagatgaagaagttgatttagtcacaagtctatagattgatgtaagtagacacagttaacggttgat |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4022708 |
caatggaataggactgtggttagtatccaactgaagatgaagaagttgatttagtcacaagtctatagattgatgtaagtagacacagttaacggttgat |
4022609 |
T |
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| Q |
218 |
ttactaatattacttcttataattataatttt |
249 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
4022608 |
ttactaatattacttcttataattataatttt |
4022577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 17 - 144
Target Start/End: Complemental strand, 4007648 - 4007522
Alignment:
| Q |
17 |
aagaccagaggttgaattaaaagggttaggaatcagccccataaaccactcaacatataggaatctcattcaacaaatgggaattgtttgattatgttaa |
116 |
Q |
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|||||||||||| || ||||||||||| || || |||||||||| | ||||||||||| |||||||||||| |||| |||||||||||||||| | || |
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| T |
4007648 |
aagaccagaggtggagttaaaagggtttggcataagccccataagcaactcaacatatcataatctcattcaaaaaat-ggaattgtttgattatatgaa |
4007550 |
T |
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| Q |
117 |
ccaatggaataggactgtggttagtatc |
144 |
Q |
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| T |
4007549 |
caaatggaataggactgtgcttagtatc |
4007522 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 149 - 249
Target Start/End: Complemental strand, 3998531 - 3998431
Alignment:
| Q |
149 |
tgaagatgaagaagttgatttagtcacaagtctatagattgatgtaagtagacacagttaacggttgatttactaatattacttcttataattataattt |
248 |
Q |
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||||||||||||| ||||||||| ||||| ||||||| ||||| ||||||||||||||||| ||||| |||| || ||||||| ||| |||||| ||| |
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| T |
3998531 |
tgaagatgaagaatttgatttagacacaactctatagtatgatgcaagtagacacagttaacagttgagttaccaacattactttctatcattatagttt |
3998432 |
T |
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| Q |
249 |
t |
249 |
Q |
| |
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| |
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|
| T |
3998431 |
t |
3998431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 148 - 199
Target Start/End: Original strand, 3958038 - 3958089
Alignment:
| Q |
148 |
ctgaagatgaagaagttgatttagtcacaagtctatagattgatgtaagtag |
199 |
Q |
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|||||||||||||||||||||||| |||||||| |||| ||||||||||||| |
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| T |
3958038 |
ctgaagatgaagaagttgatttagacacaagtccatagtttgatgtaagtag |
3958089 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 145 - 202
Target Start/End: Original strand, 3958135 - 3958192
Alignment:
| Q |
145 |
caactgaagatgaagaagttgatttagtcacaagtctatagattgatgtaagtagaca |
202 |
Q |
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||||||||||||||||| |||||||| || |||||||||| |||||||||||||||| |
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| T |
3958135 |
caactgaagatgaagaatttgatttacacagaagtctatagtttgatgtaagtagaca |
3958192 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 16 - 96
Target Start/End: Original strand, 3922439 - 3922519
Alignment:
| Q |
16 |
caagaccagaggttgaattaaaagggttaggaatcagccccataaaccactcaacatataggaatctcattcaacaaatgg |
96 |
Q |
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|||||| |||||| | ||||||||||| || || |||||||||||||| ||||||||| | ||||| ||||||||||||| |
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| T |
3922439 |
caagacgagaggtaaagttaaaagggtttggcatgagccccataaaccagtcaacatatcgcaatctaattcaacaaatgg |
3922519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 140
Target Start/End: Original strand, 3957888 - 3958009
Alignment:
| Q |
18 |
agaccagaggttgaattaaaagggttaggaatcagccccataaaccactcaacatataggaatctcattcaacaaatgggaattgtttgattatgttaac |
117 |
Q |
| |
|
||||||||||| || ||||||||||| || ||||| ||||||| || || || | ||| || || || ||||||||| |||| ||||||||||||||| |
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| T |
3957888 |
agaccagaggtggagttaaaagggtttggcatcagacccataatccccttaagagataaaaacatcgttgaacaaatgg-aattatttgattatgttaac |
3957986 |
T |
|
| Q |
118 |
caatggaataggactgtggttag |
140 |
Q |
| |
|
|||||| |||||||||| |||| |
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| T |
3957987 |
aaatggagtaggactgtgcttag |
3958009 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 189 - 251
Target Start/End: Complemental strand, 4007474 - 4007412
Alignment:
| Q |
189 |
gatgtaagtagacacagttaacggttgatttactaatattacttcttataattataattttca |
251 |
Q |
| |
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|||| ||||||||||||||||| ||||| |||| || |||||| |||||||||||||||||| |
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| T |
4007474 |
gatgcaagtagacacagttaacagttgagttaccaacgttactttttataattataattttca |
4007412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 33 - 74
Target Start/End: Complemental strand, 3999838 - 3999797
Alignment:
| Q |
33 |
ttaaaagggttaggaatcagccccataaaccactcaacatat |
74 |
Q |
| |
|
||||||||||| || ||||||||||||||||||||||||||| |
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| T |
3999838 |
ttaaaagggtttggcatcagccccataaaccactcaacatat |
3999797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 33 - 96
Target Start/End: Complemental strand, 3815415 - 3815352
Alignment:
| Q |
33 |
ttaaaagggttaggaatcagccccataaaccactcaacatataggaatctcattcaacaaatgg |
96 |
Q |
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|
||||||||||| || || |||||||||||||| ||||||||| || |||||||||||||||| |
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| T |
3815415 |
ttaaaagggtttggcatgagccccataaaccagtcaacatatcaaaacctcattcaacaaatgg |
3815352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 33 - 96
Target Start/End: Original strand, 3935783 - 3935846
Alignment:
| Q |
33 |
ttaaaagggttaggaatcagccccataaaccactcaacatataggaatctcattcaacaaatgg |
96 |
Q |
| |
|
||||||||||| || || |||||||||||||| |||||| || | ||||| ||||||||||||| |
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|
| T |
3935783 |
ttaaaagggtttggcatgagccccataaaccagtcaacacatcgcaatctaattcaacaaatgg |
3935846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 17 - 96
Target Start/End: Complemental strand, 3998657 - 3998578
Alignment:
| Q |
17 |
aagaccagaggttgaattaaaagggttaggaatcagccccataaaccactcaacatataggaatctcattcaacaaatgg |
96 |
Q |
| |
|
|||||| ||||| || ||||||||||| || || |||||||||| | ||||||||||| ||||||||| ||||||||| |
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|
| T |
3998657 |
aagacccgaggtggagttaaaagggtttggcataagccccataagcaactcaacatatcataatctcatttaacaaatgg |
3998578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 96
Target Start/End: Complemental strand, 3807814 - 3807748
Alignment:
| Q |
30 |
gaattaaaagggttaggaatcagccccataaaccactcaacatataggaatctcattcaacaaatgg |
96 |
Q |
| |
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|||||||||||||| || || ||||| |||||||| ||||||||| ||| ||||||||||||||| |
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| T |
3807814 |
gaattaaaagggtttggcatgagccctataaaccagtcaacatatcacaatttcattcaacaaatgg |
3807748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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