View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2670_low_9 (Length: 265)
Name: NF2670_low_9
Description: NF2670
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2670_low_9 |
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| [»] chr3 (6 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 253; Significance: 1e-141; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 1 - 265
Target Start/End: Original strand, 45642849 - 45643113
Alignment:
| Q |
1 |
atcacactaatatatgacggatcaagatccaggaaacagtgaaaaagaaagcaacagttggtgagatggtagtagctgaagatgcactttgtgtggtagg |
100 |
Q |
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| T |
45642849 |
atcacactaatatatgatggatcaagatccaggaaacagtgaaaaagaaagcaacagttggtgagatggtagtagctgaagatgcactttgtatggtagg |
45642948 |
T |
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| Q |
101 |
agtagtggtggtggttgttgcggcaggggtgcgattggaaggtgaacctttccctgatggtaatggtgttgcagaaggagcagcagaagaaggcttaacc |
200 |
Q |
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| T |
45642949 |
agtagtggtggtggttgttgcggcaggggtgcgatcggaaggtgaacctttccctgatggtaatggtgttgcagaaggagcagcagaagaaggcttaacc |
45643048 |
T |
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| Q |
201 |
ttaacaaagagtttcatgccaaatgtgcaatgtccaggaatagcacatatgaagtaatgtgttcc |
265 |
Q |
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| T |
45643049 |
ttaacaaagagtttcatgccaaatgtgcaatgtccaggaatagcacatatgaagtaatgtgttcc |
45643113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 2 - 265
Target Start/End: Original strand, 45650108 - 45650377
Alignment:
| Q |
2 |
tcacactaatatatgacggatcaagatccaggaaacagtgaaaaagaaagcaacagttggtgagatggtagtagctgaagatgcactttgtgtggtagga |
101 |
Q |
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| T |
45650108 |
tcacaccagtatataactgatcaagatccatgaaacagtgaaaaataaagcaacaattggtgagatactagtagatgaagatgcactttgtgtggaagga |
45650207 |
T |
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| Q |
102 |
gtagtggtggtggttgttgcggcaggggtgcgattggaaggtgaacctttccctgatggtaatggtgttgcagaaggagcag---------cagaagaag |
192 |
Q |
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| T |
45650208 |
gtagtggtggtg---gttgcagcaggggtgccatcagaaggtgaacctttccctgatggcgatggtgttgcagaaggagcagaagaagcactagaagaag |
45650304 |
T |
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| Q |
193 |
gcttaaccttaacaaagagtttcatgccaaatgtgcaatgtccaggaatagcacatatgaagtaatgtgttcc |
265 |
Q |
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| T |
45650305 |
ccttaactttaacagaaagtttcatgccacctgtgcaatgtccaggaacagcacatatgaagtaatgtgttcc |
45650377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 20 - 173
Target Start/End: Complemental strand, 45703573 - 45703423
Alignment:
| Q |
20 |
gatcaagatccaggaaacagtgaaaaagaaagcaacagttggtgagatggtagtagctgaagatgcactttgtgtggtaggagtagtggtggtggttgtt |
119 |
Q |
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| T |
45703573 |
gatcaagatccatgaaacaataaaaaagaaggcaacaattggtgagatacaagtagctgaagatgcactttgcatggtagg---agtggtggtggttgtt |
45703477 |
T |
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| Q |
120 |
gcggcaggggtgcgattggaaggtgaacctttccctgatggtaatggtgttgca |
173 |
Q |
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| T |
45703476 |
gcggcgggggtgtcatcggaaggtaaaccttttcctgatggtgatggtgctgca |
45703423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 20 - 173
Target Start/End: Complemental strand, 45887379 - 45887229
Alignment:
| Q |
20 |
gatcaagatccaggaaacagtgaaaaagaaagcaacagttggtgagatggtagtagctgaagatgcactttgtgtggtaggagtagtggtggtggttgtt |
119 |
Q |
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| T |
45887379 |
gatcaagatccatgaaacaataaaaaagaaggcaacaattggtgagatacaagtagctgaagatgcactttgcatggtagg---agtggtggtggttgtt |
45887283 |
T |
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| Q |
120 |
gcggcaggggtgcgattggaaggtgaacctttccctgatggtaatggtgttgca |
173 |
Q |
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| T |
45887282 |
gcggcgggggtgtcatcggaaggtaaaccttttcctgatggtgatggtgctgca |
45887229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 105 - 192
Target Start/End: Complemental strand, 45887213 - 45887123
Alignment:
| Q |
105 |
gtggtggtggttgttgcggcaggggtgcgattg---gaaggtgaacctttccctgatggtaatggtgttgcagaaggagcagcagaagaag |
192 |
Q |
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| T |
45887213 |
gtggtggttgttgttgcggcgggggtgtcatcggaagaaggtgaaccttttcctgatggtgatggtgcagcagaaggagcagcagaagaag |
45887123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 105 - 192
Target Start/End: Complemental strand, 45703407 - 45703317
Alignment:
| Q |
105 |
gtggtggtggttgttgcggcaggggtgcgattg---gaaggtgaacctttccctgatggtaatggtgttgcagaaggagcagcagaagaag |
192 |
Q |
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| T |
45703407 |
gtggtggttgttgttgcggcgggggtgtcatcggaagaaggtgaaccttttcctgatggtgatggtgcagcagaaggagcagaagaagaag |
45703317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 20 - 117
Target Start/End: Complemental strand, 1193689 - 1193589
Alignment:
| Q |
20 |
gatcaagatccaggaaacagtgaaaaagaaag---caacagttggtgagatggtagtagctgaagatgcactttgtgtggtaggagtagtggtggtggtt |
116 |
Q |
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| T |
1193689 |
gatcaagatccatgaaacaatgaaaaataaagaagcaacaattggttagagcctagtagctgaagatgcactttgcgtagtaggagtagtggtggtagtt |
1193590 |
T |
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| Q |
117 |
g |
117 |
Q |
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| T |
1193589 |
g |
1193589 |
T |
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