View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2671_high_13 (Length: 274)
Name: NF2671_high_13
Description: NF2671
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2671_high_13 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 177; Significance: 2e-95; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 18 - 202
Target Start/End: Original strand, 45485063 - 45485247
Alignment:
| Q |
18 |
ataactgataagtacggcggtcgtacaagtaatagcagcttcgccatcagttcaggaatccctttccattctccgccacataacaacttaacaaccaaat |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45485063 |
ataactgataagtacggcggtcgtacaagtaatagcagcttcgccatcagttcaggaatccctttccattctccgccacataacaacttaacaaccaaat |
45485162 |
T |
|
| Q |
118 |
cctaatcattttccgttccttatcttctctattttttggtcaagtattttcccatctaatttaaattacttatcaaaattcatag |
202 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||| |
|
|
| T |
45485163 |
cctaatcattttccgttccttatcttctctattttttggtcaagtatttttccatcttatttaaattacttatcaaaattcatag |
45485247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 228 - 264
Target Start/End: Original strand, 45485286 - 45485322
Alignment:
| Q |
228 |
ctggaccttttatatattatgcattgttcctatgcta |
264 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||| |
|
|
| T |
45485286 |
ctggaccttttatatattatgcattgttcctaagcta |
45485322 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University