View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2671_high_14 (Length: 267)

Name: NF2671_high_14
Description: NF2671
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2671_high_14
NF2671_high_14
[»] chr6 (14 HSPs)
chr6 (13-145)||(26146828-26146960)
chr6 (13-145)||(25548656-25548788)
chr6 (147-263)||(25514523-25514640)
chr6 (141-263)||(26146683-26146806)
chr6 (13-128)||(26062734-26062849)
chr6 (13-128)||(26082703-26082818)
chr6 (13-128)||(25453157-25453274)
chr6 (174-259)||(25986844-25986929)
chr6 (13-128)||(25489066-25489180)
chr6 (155-251)||(26061314-26061410)
chr6 (155-251)||(26081284-26081380)
chr6 (142-236)||(25548535-25548628)
chr6 (175-251)||(25488066-25488142)
chr6 (13-128)||(24771350-24771465)
[»] chr2 (1 HSPs)
chr2 (141-208)||(17988740-17988807)


Alignment Details
Target: chr6 (Bit Score: 129; Significance: 8e-67; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 13 - 145
Target Start/End: Complemental strand, 26146960 - 26146828
Alignment:
Q  13 aaaattgaggaaagcttttgtgaattcatttgactttgataaaaaccagaatagattataaaaattacatacaatgcaaatattgaattttcatagttaa 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  26146960 aaaattgaggaaagcttttgtgaattcatttgactttgataaaaaccagaatagattataaaaattacatacaatgcaaatattgaattttcataggtaa 26146861  T
Q  113 ctaaaacaccatataaaaactactttttcataa 145  Q
    |||||||||||||||||||||||||||||||||    
T  26146860 ctaaaacaccatataaaaactactttttcataa 26146828  T

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Target: chr6; HSP #2
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 13 - 145
Target Start/End: Complemental strand, 25548788 - 25548656
Alignment:
Q  13 aaaattgaggaaagcttttgtgaattcatttgactttgataaaaaccagaatagattataaaaattacatacaatgcaaatattgaattttcatagttaa 112  Q
    |||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  25548788 aaaaatgaggaaagcttttgtcaattcatttgactttgataaaaaccagaatagattataaaaattacatacaatgcaaatattgaatattcatagttaa 25548689  T
Q  113 ctaaaacaccatataaaaactactttttcataa 145  Q
    |||||||||||||||||||||||||||||||||    
T  25548688 ctaaaacaccatataaaaactactttttcataa 25548656  T

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Target: chr6; HSP #3
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 147 - 263
Target Start/End: Complemental strand, 25514640 - 25514523
Alignment:
Q  147 acattaaaatacattatccgaggttggcctccat-aatttacatgtacttctaaaatggtattcattctataatctaatgcatgcctccaaacgtacagt 245  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25514640 acattaaaatacattatccgaggttggcctccatgaatttacatgtacttctaaaatggtattcattctataatctaatgcatgcctccaaacgtacagt 25514541  T
Q  246 aatgaatttgtaactgac 263  Q
    ||||||||||||||||||    
T  25514540 aatgaatttgtaactgac 25514523  T

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Target: chr6; HSP #4
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 141 - 263
Target Start/End: Complemental strand, 26146806 - 26146683
Alignment:
Q  141 cataaaacattaaaatacattatccgaggttggcctccat-aatttacatgtacttctaaaatggtattcattctataatctaatgcatgcctccaaacg 239  Q
    ||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  26146806 cataaaacattcaaatacattatccgaggttggcctccatgaatttacatgtacttctaaaatggtattcattctataatctaatgcatgtctccaaacg 26146707  T
Q  240 tacagtaatgaatttgtaactgac 263  Q
    ||||||||||||||||||||||||    
T  26146706 tacagtaatgaatttgtaactgac 26146683  T

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Target: chr6; HSP #5
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 13 - 128
Target Start/End: Complemental strand, 26062849 - 26062734
Alignment:
Q  13 aaaattgaggaaagcttttgtgaattcatttgactttgataaaaaccagaatagattataaaaattacatacaatgcaaatattgaattttcatagttaa 112  Q
    ||||||||||||||||||||| |||||||||||||  ||||||||||||||||||||||||| | ||||||||||||||||||| |||||||||||||||    
T  26062849 aaaattgaggaaagcttttgtcaattcatttgactcagataaaaaccagaatagattataaacactacatacaatgcaaatattcaattttcatagttaa 26062750  T
Q  113 ctaaaacaccatataa 128  Q
    ||||||||||||||||    
T  26062749 ctaaaacaccatataa 26062734  T

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Target: chr6; HSP #6
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 13 - 128
Target Start/End: Complemental strand, 26082818 - 26082703
Alignment:
Q  13 aaaattgaggaaagcttttgtgaattcatttgactttgataaaaaccagaatagattataaaaattacatacaatgcaaatattgaattttcatagttaa 112  Q
    ||||||||||||||||||||| |||||||||||||  ||||||||||||||||||||||||| | ||||||||||||||||||| |||||||||||||||    
T  26082818 aaaattgaggaaagcttttgtcaattcatttgactcagataaaaaccagaatagattataaacactacatacaatgcaaatattcaattttcatagttaa 26082719  T
Q  113 ctaaaacaccatataa 128  Q
    ||||||||||||||||    
T  26082718 ctaaaacaccatataa 26082703  T

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Target: chr6; HSP #7
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 13 - 128
Target Start/End: Complemental strand, 25453274 - 25453157
Alignment:
Q  13 aaaattgaggaaagcttttgtgaattcatttgactttgataaaaaccagaatagattataaaaatt--acatacaatgcaaatattgaattttcatagtt 110  Q
    ||||||||||||||||||||| |||||||||||||  ||||||||||||||||||||||||||| |  ||||||||||||||||||||||||||||||||    
T  25453274 aaaattgaggaaagcttttgtcaattcatttgactcagataaaaaccagaatagattataaaaactacacatacaatgcaaatattgaattttcatagtt 25453175  T
Q  111 aactaaaacaccatataa 128  Q
    ||||||||||||| ||||    
T  25453174 aactaaaacaccacataa 25453157  T

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Target: chr6; HSP #8
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 174 - 259
Target Start/End: Complemental strand, 25986929 - 25986844
Alignment:
Q  174 cctccataatttacatgtacttctaaaatggtattcattctataatctaatgcatgcctccaaacgtacagtaatgaatttgtaac 259  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25986929 cctccataatttacatgtacttctaaaatggtattcattctataatctaatgcatgcctccaaacgtacagtaatgaatttgtaac 25986844  T

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Target: chr6; HSP #9
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 13 - 128
Target Start/End: Complemental strand, 25489180 - 25489066
Alignment:
Q  13 aaaattgaggaaagcttttgtgaattcatttgactttgataaaaaccagaatagattataaaaattacatacaatgcaaatattgaattttcatagttaa 112  Q
    ||||||||||||||||||||| |||||||||||||  |||||||||||||||||||||| || | ||||||||||||||||||| |||||||||||||||    
T  25489180 aaaattgaggaaagcttttgtcaattcatttgactcagataaaaaccagaatagattat-aacactacatacaatgcaaatattcaattttcatagttaa 25489082  T
Q  113 ctaaaacaccatataa 128  Q
    ||||||||||||||||    
T  25489081 ctaaaacaccatataa 25489066  T

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Target: chr6; HSP #10
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 155 - 251
Target Start/End: Complemental strand, 26061410 - 26061314
Alignment:
Q  155 atacattatccgaggttggcctccataatttacatgtacttctaaaatggtattcattctataatctaatgcatgcctccaaacgtacagtaatgaa 251  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| || ||| |||||||||||||    
T  26061410 atacattatccaaggttggcctccataatttacatgtacttctaaaatggtgttcattctataatctaatgcatgcatctaaatgtacagtaatgaa 26061314  T

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Target: chr6; HSP #11
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 155 - 251
Target Start/End: Complemental strand, 26081380 - 26081284
Alignment:
Q  155 atacattatccgaggttggcctccataatttacatgtacttctaaaatggtattcattctataatctaatgcatgcctccaaacgtacagtaatgaa 251  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| || ||| |||||||||||||    
T  26081380 atacattatccaaggttggcctccataatttacatgtacttctaaaatggtgttcattctataatctaatgcatgcatctaaatgtacagtaatgaa 26081284  T

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Target: chr6; HSP #12
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 142 - 236
Target Start/End: Complemental strand, 25548628 - 25548535
Alignment:
Q  142 ataaaacattaaaatacattatccgaggttggcctccataatttacatgtacttctaaaatggtattcattctataatctaatgcatgcctccaa 236  Q
    |||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |  ||||||||||||||||||||    
T  25548628 ataaaacattcaaatacattatccgaggttggcctccatattttacatgtacttctaaaatggtattcatt-tcaaatctaatgcatgcctccaa 25548535  T

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Target: chr6; HSP #13
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 175 - 251
Target Start/End: Complemental strand, 25488142 - 25488066
Alignment:
Q  175 ctccataatttacatgtacttctaaaatggtattcattctataatctaatgcatgcctccaaacgtacagtaatgaa 251  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| || ||| |||||||||||||    
T  25488142 ctccataatttacatgtacttctaaaatggtgttcattctataatctaatgcatgcatctaaatgtacagtaatgaa 25488066  T

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Target: chr6; HSP #14
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 13 - 128
Target Start/End: Complemental strand, 24771465 - 24771350
Alignment:
Q  13 aaaattgaggaaagcttttgtgaattcatttgactttgataaaaaccagaatagattataaaaattacatacaatgcaaatattgaattttcatagttaa 112  Q
    ||||||||||||||||||||| |||||| ||||   ||||||||||||||||||  | |||||| | ||| ||||||||||||||||||| | |||||||    
T  24771465 aaaattgaggaaagcttttgtcaattcacttgatgctgataaaaaccagaatagtgtgtaaaaactgcatgcaatgcaaatattgaatttacttagttaa 24771366  T
Q  113 ctaaaacaccatataa 128  Q
    || |||||||||||||    
T  24771365 cttaaacaccatataa 24771350  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 141 - 208
Target Start/End: Original strand, 17988740 - 17988807
Alignment:
Q  141 cataaaacattaaaatacattatccgaggttggcctccataatttacatgtacttctaaaatggtatt 208  Q
    |||||||| || ||||||||||||| | ||||||||||| |||||||||| ||||||| |||||||||    
T  17988740 cataaaacgttcaaatacattatccaaagttggcctccagaatttacatgaacttctacaatggtatt 17988807  T

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