View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2671_high_16 (Length: 250)
Name: NF2671_high_16
Description: NF2671
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2671_high_16 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 122; Significance: 1e-62; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 54 - 250
Target Start/End: Complemental strand, 7224690 - 7224494
Alignment:
| Q |
54 |
ccgtcacaattattcaaactcatgcatgactttaatgaggggattagttgtacattcacaagataaaatagagcccaattacggccactttctaaaggat |
153 |
Q |
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| T |
7224690 |
ccgtcacaattgctcaaactcatgcatgactctaatgagtggattagttgtacattcacaagataaaataaagcccaattacggccactttttaaaggat |
7224591 |
T |
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| Q |
154 |
attccttctgttctattataagtgagtcttttgtttatttcacacatattnnnnnnnnntgtataagtgaaataaagagaaaaatggttttgagttt |
250 |
Q |
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| T |
7224590 |
atttcttctatcctattataagtgagtcttttgttcatttcacacatattaaaaaaaaatgtataagtgaaagaaagcgaaaaatggttttgagttt |
7224494 |
T |
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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 216 - 248
Target Start/End: Complemental strand, 2797167 - 2797135
Alignment:
| Q |
216 |
ataagtgaaataaagagaaaaatggttttgagt |
248 |
Q |
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| T |
2797167 |
ataagtgaaagaaagagaaaaatggttttgagt |
2797135 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 166 - 202
Target Start/End: Original strand, 10309183 - 10309219
Alignment:
| Q |
166 |
ctattataagtgagtcttttgtttatttcacacatat |
202 |
Q |
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| T |
10309183 |
ctattataagtaagtcttttgttcatttcacacatat |
10309219 |
T |
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