View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2671_high_6 (Length: 452)
Name: NF2671_high_6
Description: NF2671
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2671_high_6 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 279; Significance: 1e-156; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 1 - 452
Target Start/End: Complemental strand, 7224507 - 7224037
Alignment:
| Q |
1 |
atggttttgagtttcttgataaatattgatgcattactccttatcataaatgcaaagttaatgagaagtgattaaagtagtattaattagatttataatt |
100 |
Q |
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||||||||||||||||||| || |||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
7224507 |
atggttttgagtttcttgacaagtattgatgcattcctccttatcataaatataaagttaatgagaagtgattaaagtagtattaattaaatttataatt |
7224408 |
T |
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| Q |
101 |
ggnnnnnnn-taattaatattgtattgaaataactcacttgctat--ggaacggaa-----aatagataagagc--------------agaaaaattatt |
178 |
Q |
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| T |
7224407 |
gaaaaaaaagtaattaatattatattgaaataactcacttgctatatggaacggaagcagtaatagatatgagccaaggagtatttgcagaaaaattatt |
7224308 |
T |
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| Q |
179 |
tcgagaaatgtgaaggttaaggaaatagattcctacatttattaaaaagttaaacaattaactatatagaaactcaaccaaataatttttgagaacatga |
278 |
Q |
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| T |
7224307 |
tcgagaaatgtgaaggttaaggaaatagattcccacgtttgttacaaa-ttaaacaactaactatatagaaactctaccaaatattttttgagaacatga |
7224209 |
T |
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| Q |
279 |
ctattattattacaccaaacacgtttaagaaaaacaagttgagaataagtggccatagttccaagggggaattatgaaccatatgaaacgaacgccccta |
378 |
Q |
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| T |
7224208 |
ctattattattacaccaaacacgtttaagaaaaacaagttgagaataagtggccatagttccaa-ggggaattatgaaccatatgaaacgaacgccccta |
7224110 |
T |
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| Q |
379 |
gcagctgtaataacctttatcaggtttcatttgattaaaagaatggtctaacatgaatgggttagttatcttac |
452 |
Q |
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| T |
7224109 |
gcagctgtaataacctttatcaggtttcatttgattaaaagaatggtctaacatgaat-ggttagttatcttac |
7224037 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 67 - 129
Target Start/End: Complemental strand, 29225783 - 29225721
Alignment:
| Q |
67 |
agtgattaaagtagtattaattagatttataattggnnnnnnntaattaatattgtattgaaa |
129 |
Q |
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| T |
29225783 |
agtgatgaaagtagtattaattagagttataattggaaaaaagtaattattattgtattgaaa |
29225721 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 65 - 126
Target Start/End: Original strand, 4466230 - 4466291
Alignment:
| Q |
65 |
gaagtgattaaagtagtattaattagatttataattggnnnnnnntaattaatattgtattg |
126 |
Q |
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| T |
4466230 |
gaagtggtgaaagtagtattaattagagttataattggaaaaaaataattaatattgtattg |
4466291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 67 - 129
Target Start/End: Original strand, 72183 - 72245
Alignment:
| Q |
67 |
agtgattaaagtagtattaattagatttataattggnnnnnnntaattaatattgtattgaaa |
129 |
Q |
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| T |
72183 |
agtgatgaaagtagtattaattagatttataattgggaaaaagtaattattattgtattgaaa |
72245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 3 - 58
Target Start/End: Complemental strand, 44024822 - 44024767
Alignment:
| Q |
3 |
ggttttgagtttcttgataaatattgatgcattactccttatcataaatgcaaagt |
58 |
Q |
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| T |
44024822 |
ggtttttagtatcttgtcaaatattgatgcatttctcattatcataaatgcaaagt |
44024767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 66 - 102
Target Start/End: Complemental strand, 4794604 - 4794568
Alignment:
| Q |
66 |
aagtgattaaagtagtattaattagatttataattgg |
102 |
Q |
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| T |
4794604 |
aagtgatgaaagtagtattaattagagttataattgg |
4794568 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 4 - 56
Target Start/End: Complemental strand, 9937122 - 9937070
Alignment:
| Q |
4 |
gttttgagtttcttgataaatattgatgcattactccttatcataaatgcaaa |
56 |
Q |
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| T |
9937122 |
gttttgagtgtcttgtcaaatattgttgcatttctcattatcataaatgcaaa |
9937070 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 67 - 129
Target Start/End: Complemental strand, 8149989 - 8149927
Alignment:
| Q |
67 |
agtgattaaagtagtattaattagatttataattggnnnnnnntaattaatattgtattgaaa |
129 |
Q |
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| T |
8149989 |
agtgatgaaagtaatattaattagagttataattggaaaaaagtaattaatattgtattgaaa |
8149927 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 67 - 129
Target Start/End: Complemental strand, 38319941 - 38319879
Alignment:
| Q |
67 |
agtgattaaagtagtattaattagatttataattggnnnnnnntaattaatattgtattgaaa |
129 |
Q |
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| T |
38319941 |
agtgatgaaagtagtattaattagtgttataattggaaaaaagtaattaatattgtattgaaa |
38319879 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 24 - 56
Target Start/End: Original strand, 18872676 - 18872708
Alignment:
| Q |
24 |
tattgatgcattactccttatcataaatgcaaa |
56 |
Q |
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| T |
18872676 |
tattgatgcatttctccttatcataaatgcaaa |
18872708 |
T |
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