View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2671_high_8 (Length: 427)
Name: NF2671_high_8
Description: NF2671
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2671_high_8 |
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Alignment Details
Target: chr1 (Bit Score: 388; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 1 - 411
Target Start/End: Complemental strand, 28483276 - 28482863
Alignment:
| Q |
1 |
acagaccgggaacgatgaattggtaattgcagttctttctcctgtaaaatgagggaagttcaaattaaatagaagtaagagtcccacattttgtttttat |
100 |
Q |
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| T |
28483276 |
acagaccgggaacgatgaattggtaattgcagttctttctcctgtaaaatgagggaagttcaaattaaatagaagtaagagtcccacattttgtttttat |
28483177 |
T |
|
| Q |
101 |
acaatgattttagaacttgataactatatactgacaacgtgaaaagttttacacagacgttcaaccatatctaatcatatagatattactataatatgat |
200 |
Q |
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| T |
28483176 |
acaatgattttagaacttgattactatatactgacaacgtgaaaagttttacacagacgttcaaccatatctaatcatatagatattactataacatgat |
28483077 |
T |
|
| Q |
201 |
ttgctaccaaggttaaatctgattagacattgtgtaaaattgtttatatcgtcggtgcatatttatcaaaccgatgatttaaccattaatg---ataact |
297 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||| |
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| T |
28483076 |
ttgctaccaaggttaaatctgattagacattgtgtaaaattgtttatatcgtcggtgcatatttattaaaccgatgatttaaccattaatgataataact |
28482977 |
T |
|
| Q |
298 |
acaatgtaacatactgcaaatgctgctaaaatacttacactacccattgctggaaaacctttccctccatgtacatacactggatttgaacgaggaaccg |
397 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28482976 |
acaatgtaacatactgcaaatgctgctaaaatacttacactacccattgctggaaaacctttccctccatgtacatacactggatttgaacgaggaaccg |
28482877 |
T |
|
| Q |
398 |
gcgatacaggcaat |
411 |
Q |
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| T |
28482876 |
gcgatacaggcaat |
28482863 |
T |
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