View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2671_low_12 (Length: 368)

Name: NF2671_low_12
Description: NF2671
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2671_low_12
NF2671_low_12
[»] chr6 (37 HSPs)
chr6 (19-357)||(25514208-25514539)
chr6 (50-242)||(26059302-26059503)
chr6 (50-242)||(26079272-26079473)
chr6 (240-340)||(25986742-25986842)
chr6 (240-356)||(25486976-25487087)
chr6 (26-122)||(25486726-25486822)
chr6 (240-357)||(26146574-26146699)
chr6 (50-122)||(25583081-25583153)
chr6 (240-356)||(26059612-26059736)
chr6 (240-356)||(26079582-26079706)
chr6 (50-122)||(25548351-25548423)
chr6 (133-180)||(25486859-25486906)
chr6 (133-180)||(26146457-26146504)
chr6 (247-305)||(27661938-27661996)
chr6 (133-174)||(25548458-25548499)
chr6 (57-99)||(27589871-27589913)
chr6 (57-99)||(27674295-27674337)
chr6 (57-99)||(27695328-27695370)
chr6 (250-306)||(27715036-27715092)
chr6 (57-99)||(27607847-27607889)
chr6 (57-99)||(27682323-27682365)
chr6 (57-99)||(27715261-27715303)
chr6 (261-306)||(27079072-27079117)
chr6 (274-340)||(27703216-27703284)
chr6 (56-92)||(28795797-28795833)
chr6 (59-114)||(26638820-26638875)
chr6 (59-114)||(26744786-26744841)
chr6 (133-172)||(27715139-27715178)
chr6 (244-310)||(25077822-25077887)
chr6 (244-290)||(27423901-27423947)
chr6 (155-198)||(25583153-25583193)
chr6 (57-94)||(26626537-26626574)
chr6 (56-97)||(26659373-26659414)
chr6 (57-94)||(26732514-26732551)
chr6 (56-97)||(26765344-26765385)
chr6 (57-93)||(27657456-27657492)
chr6 (56-92)||(28789779-28789815)
[»] scaffold0349 (3 HSPs)
scaffold0349 (250-306)||(16852-16908)
scaffold0349 (57-99)||(16641-16683)
scaffold0349 (133-172)||(16766-16805)
[»] chr8 (3 HSPs)
chr8 (57-97)||(29270569-29270609)
chr8 (240-277)||(29270329-29270366)
chr8 (133-172)||(29270443-29270482)
[»] chr4 (5 HSPs)
chr4 (58-95)||(18686358-18686395)
chr4 (58-122)||(18652233-18652297)
chr4 (58-93)||(18696166-18696201)
chr4 (58-95)||(18676318-18676355)
chr4 (58-95)||(18720848-18720885)
[»] scaffold0003 (1 HSPs)
scaffold0003 (244-290)||(63416-63462)
[»] scaffold0277 (1 HSPs)
scaffold0277 (56-92)||(10384-10420)


Alignment Details
Target: chr6 (Bit Score: 171; Significance: 9e-92; HSPs: 37)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 171; E-Value: 9e-92
Query Start/End: Original strand, 19 - 357
Target Start/End: Original strand, 25514208 - 25514539
Alignment:
Q  19 atttgtcgttccatgaggaagagatatgcgaaaatatgcaaatgggaatccacgtgtggaaggagaaaagcaacacggaggggggtgtgagattcattga 118  Q
    |||||| |||| ||| |||| |||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  25514208 atttgtggttcgatgcggaaaagatattcgaaaatacgcaaatgggaatccacgtgtggaaggagaaaagcaacacggaggggggtgtgagattaattga 25514307  T
Q  119 tcctcnnnnnnngaaaagattggtggaagtgggagtttcagagaaaggggaggaggaggagggttttagtgacacggaggaggatttaatattgaagaat 218  Q
    ||||          ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||    
T  25514308 tccttcattatcacaaaaattggtggaagtgggagtttcagagaaaggggaggaggaggagggttttagtgacacggaggaggatgtaatattgaacaat 25514407  T
Q  219 cctaataatagaaagacttggggtccatcataaagttaaccgtcttcttgttattctctcaatttcaacattgcaggtttgtgctttg-----------t 307  Q
    |||||||||||||||||||               ||||||||||||||||||||||||||||| ||||||||||||||||||||||||           |    
T  25514408 cctaataatagaaagactt---------------gttaaccgtcttcttgttattctctcaatctcaacattgcaggtttgtgctttgttgtatatactt 25514492  T
Q  308 tgtataaatgttgattaatttctgtatatagtcgtcagttacaaattcat 357  Q
    ||||||||||||||||||||||||||||||   |||||||||||||||||    
T  25514493 tgtataaatgttgattaatttctgtatata---gtcagttacaaattcat 25514539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 50 - 242
Target Start/End: Original strand, 26059302 - 26059503
Alignment:
Q  50 aaatatgcaaatgggaatccacgtgtggaaggagaaaagcaacacggaggggggtgtgagattcattgatcct---------cnnnnnnngaaaagattg 140  Q
    ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||         |       | ||||||||    
T  26059302 aaatacgcaaatgggaatccacgtgtggaaggagaaaagcaacatggaggggggtgtgagattcattgatccttcattatcacaatttatgcaaagattg 26059401  T
Q  141 gtggaagtgggagtttcagagaaaggggaggaggaggagggttttagtgacacggaggaggatttaatattgaagaatcctaataatagaaagacttggg 240  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  26059402 gtggaagtgggagtttcagagaaaggggaggaggaggagggttttagtgacacggaggaggatgtaatattgaagaatcctaataatagaaagacttggg 26059501  T
Q  241 gt 242  Q
    ||    
T  26059502 gt 26059503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 50 - 242
Target Start/End: Original strand, 26079272 - 26079473
Alignment:
Q  50 aaatatgcaaatgggaatccacgtgtggaaggagaaaagcaacacggaggggggtgtgagattcattgatcct---------cnnnnnnngaaaagattg 140  Q
    ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||         |       | ||||||||    
T  26079272 aaatacgcaaatgggaatccacgtgtggaaggagaaaagcaacatggaggggggtgtgagattcattgatccttcattatcacaatttatgcaaagattg 26079371  T
Q  141 gtggaagtgggagtttcagagaaaggggaggaggaggagggttttagtgacacggaggaggatttaatattgaagaatcctaataatagaaagacttggg 240  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  26079372 gtggaagtgggagtttcagagaaaggggaggaggaggagggttttagtgacacggaggaggatgtaatattgaagaatcctaataatagaaagacttggg 26079471  T
Q  241 gt 242  Q
    ||    
T  26079472 gt 26079473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 240 - 340
Target Start/End: Original strand, 25986742 - 25986842
Alignment:
Q  240 ggtccatcataaagttaaccgtcttcttgttattctctcaatttcaacattgcaggtttgtgctttgttgtataaatgttgattaatttctgtatatagt 339  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25986742 ggtccatcataaagttaaccgtcttcttgttattctctcaatctcaacattgcaggtttgtgctttgttgtataaatgttgattaatttctgtatatagt 25986841  T
Q  340 c 340  Q
    |    
T  25986842 c 25986842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 240 - 356
Target Start/End: Original strand, 25486976 - 25487087
Alignment:
Q  240 ggtccatcataaagttaaccgtcttcttgttattctctcaatttcaacattgcaggtttgtgctttgttgtataaatgttgattaatttctgtatatagt 339  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||  ||||||||||||||      
T  25486976 ggtccatcataaagttaaccgtcttcttgttattctctcaatctcaacattgcaggtttgtgctttgttgtataaatgttga--aatttctgtatata-- 25487071  T
Q  340 cgtcagttacaaattca 356  Q
     ||||||||||||||||    
T  25487072 -gtcagttacaaattca 25487087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 26 - 122
Target Start/End: Original strand, 25486726 - 25486822
Alignment:
Q  26 gttccatgaggaagagatatgcgaaaatatgcaaatgggaatccacgtgtggaaggagaaaagcaacacggaggggggtgtgagattcattgatcct 122  Q
    |||| |||||||| |||||| |||||| | |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25486726 gttcgatgaggaaaagatattcgaaaacacgcaaatcggaatccacgtgtggaaggagaaaagcaacacggaggggggtgtgagattcattgatcct 25486822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 240 - 357
Target Start/End: Original strand, 26146574 - 26146699
Alignment:
Q  240 ggtccatcataaagttaaccgtcttcttgttattctctcaatttcaacattgcaggtttgtgctttg-----------ttgtataaatgttgattaattt 328  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||           ||||||||||||||||||||||    
T  26146574 ggtccatcataaagttaaccgtcttcttgttattctctcaatctcaacattgcaggtttgtgctttgttgtatatactttgtataaatgttgattaattt 26146673  T
Q  329 ctgtatatagtcgtcagttacaaattcat 357  Q
    |||||||||   |||||||||||||||||    
T  26146674 ctgtatata---gtcagttacaaattcat 26146699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 50 - 122
Target Start/End: Original strand, 25583081 - 25583153
Alignment:
Q  50 aaatatgcaaatgggaatccacgtgtggaaggagaaaagcaacacggaggggggtgtgagattcattgatcct 122  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25583081 aaatacgcaaatgggaatccacgtgtggaaggagaaaagcaacacggaggggggtgtgagattcattgatcct 25583153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 240 - 356
Target Start/End: Original strand, 26059612 - 26059736
Alignment:
Q  240 ggtccatcataaagttaaccgtcttcttgttattctctcaatttcaacattgcaggtttgtgctttg-----------ttgtataaatgttgattaattt 328  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||           ||||||||||||||||||||||    
T  26059612 ggtccatcataaagttaaccgtcttcttgttattctctcaatctcaacattgcaggtttgtgctttgatgtttatactttgtataaatgttgattaattt 26059711  T
Q  329 ctgtatatagtcgtcagttacaaattca 356  Q
    ||||||   || ||||||||||||||||    
T  26059712 ctgtat---gtagtcagttacaaattca 26059736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 240 - 356
Target Start/End: Original strand, 26079582 - 26079706
Alignment:
Q  240 ggtccatcataaagttaaccgtcttcttgttattctctcaatttcaacattgcaggtttgtgctttg-----------ttgtataaatgttgattaattt 328  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||           ||||||||||||||||||||||    
T  26079582 ggtccatcataaagttaaccgtcttcttgttattctctcaatctcaacattgcaggtttgtgctttgatgtttatactttgtataaatgttgattaattt 26079681  T
Q  329 ctgtatatagtcgtcagttacaaattca 356  Q
    ||||||   || ||||||||||||||||    
T  26079682 ctgtat---gtagtcagttacaaattca 26079706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 50 - 122
Target Start/End: Original strand, 25548351 - 25548423
Alignment:
Q  50 aaatatgcaaatgggaatccacgtgtggaaggagaaaagcaacacggaggggggtgtgagattcattgatcct 122  Q
    ||||| ||||||||||||||| |||||||||||||||||||||| ||||||| ||||||||||||||||||||    
T  25548351 aaatacgcaaatgggaatccatgtgtggaaggagaaaagcaacatggaggggagtgtgagattcattgatcct 25548423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 133 - 180
Target Start/End: Original strand, 25486859 - 25486906
Alignment:
Q  133 aaagattggtggaagtgggagtttcagagaaaggggaggaggaggagg 180  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  25486859 aaagattggtggaagtgggagtttcagagaaaggggaggaggaggagg 25486906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 133 - 180
Target Start/End: Original strand, 26146457 - 26146504
Alignment:
Q  133 aaagattggtggaagtgggagtttcagagaaaggggaggaggaggagg 180  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  26146457 aaagattggtggaagtgggagtttcagagaaaggggaggaggaggagg 26146504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 247 - 305
Target Start/End: Complemental strand, 27661996 - 27661938
Alignment:
Q  247 cataaagttaaccgtcttcttgttattctctcaatttcaacattgcaggtttgtgcttt 305  Q
    |||||||||||||||||| ||||||| |||||||| ||||| |||||||||||||||||    
T  27661996 cataaagttaaccgtcttgttgttatcctctcaatctcaactttgcaggtttgtgcttt 27661938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 133 - 174
Target Start/End: Original strand, 25548458 - 25548499
Alignment:
Q  133 aaagattggtggaagtgggagtttcagagaaaggggaggagg 174  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  25548458 aaagattggtggaagtgggagtttcagagaaaggggaggagg 25548499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 57 - 99
Target Start/End: Complemental strand, 27589913 - 27589871
Alignment:
Q  57 caaatgggaatccacgtgtggaaggagaaaagcaacacggagg 99  Q
    ||||||||||||||||||||||| |||||||||||||||||||    
T  27589913 caaatgggaatccacgtgtggaaagagaaaagcaacacggagg 27589871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 57 - 99
Target Start/End: Complemental strand, 27674337 - 27674295
Alignment:
Q  57 caaatgggaatccacgtgtggaaggagaaaagcaacacggagg 99  Q
    ||||||||||||||||||||||| |||||||||||||||||||    
T  27674337 caaatgggaatccacgtgtggaaagagaaaagcaacacggagg 27674295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 57 - 99
Target Start/End: Complemental strand, 27695370 - 27695328
Alignment:
Q  57 caaatgggaatccacgtgtggaaggagaaaagcaacacggagg 99  Q
    ||||||||||||||||||||||| |||||||||||||||||||    
T  27695370 caaatgggaatccacgtgtggaatgagaaaagcaacacggagg 27695328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 250 - 306
Target Start/End: Complemental strand, 27715092 - 27715036
Alignment:
Q  250 aaagttaaccgtcttcttgttattctctcaatttcaacattgcaggtttgtgctttg 306  Q
    |||||||| ||||||||||||||||||||||| |||| | | |||||||||||||||    
T  27715092 aaagttaatcgtcttcttgttattctctcaatctcaagaatacaggtttgtgctttg 27715036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 57 - 99
Target Start/End: Complemental strand, 27607889 - 27607847
Alignment:
Q  57 caaatgggaatccacgtgtggaaggagaaaagcaacacggagg 99  Q
    ||||||||||||||||||||||| |||||||||||||| ||||    
T  27607889 caaatgggaatccacgtgtggaatgagaaaagcaacacagagg 27607847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 57 - 99
Target Start/End: Original strand, 27682323 - 27682365
Alignment:
Q  57 caaatgggaatccacgtgtggaaggagaaaagcaacacggagg 99  Q
    |||| |||||||||||||||||| |||||||||||||||||||    
T  27682323 caaaggggaatccacgtgtggaatgagaaaagcaacacggagg 27682365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 57 - 99
Target Start/End: Complemental strand, 27715303 - 27715261
Alignment:
Q  57 caaatgggaatccacgtgtggaaggagaaaagcaacacggagg 99  Q
    ||||||||| ||||||||||||| |||||||||||||||||||    
T  27715303 caaatgggagtccacgtgtggaatgagaaaagcaacacggagg 27715261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 261 - 306
Target Start/End: Original strand, 27079072 - 27079117
Alignment:
Q  261 tcttcttgttattctctcaatttcaacattgcaggtttgtgctttg 306  Q
    |||| |||||||||||||||| ||||||||| ||||||||||||||    
T  27079072 tcttgttgttattctctcaatctcaacattgaaggtttgtgctttg 27079117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 274 - 340
Target Start/End: Complemental strand, 27703284 - 27703216
Alignment:
Q  274 ctctcaatttcaacattgcaggtttgtgctttgttgtata--aatgttgattaatttctgtatatagtc 340  Q
    |||||||| ||||||||| ||||||||| |||  ||| ||  |||||||||||||||||||||||||||    
T  27703284 ctctcaatctcaacattggaggtttgtgattttctgtttacaaatgttgattaatttctgtatatagtc 27703216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 56 - 92
Target Start/End: Original strand, 28795797 - 28795833
Alignment:
Q  56 gcaaatgggaatccacgtgtggaaggagaaaagcaac 92  Q
    ||||||||||||||||||| |||||||||||||||||    
T  28795797 gcaaatgggaatccacgtgaggaaggagaaaagcaac 28795833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 59 - 114
Target Start/End: Original strand, 26638820 - 26638875
Alignment:
Q  59 aatgggaatccacgtgtggaaggagaaaagcaacacggaggggggtgtgagattca 114  Q
    ||||||||||||||| |  |||||||||||||||||||||| || ||||| |||||    
T  26638820 aatgggaatccacgttttaaaggagaaaagcaacacggaggaggatgtgatattca 26638875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 59 - 114
Target Start/End: Original strand, 26744786 - 26744841
Alignment:
Q  59 aatgggaatccacgtgtggaaggagaaaagcaacacggaggggggtgtgagattca 114  Q
    ||||||||||||||| |  |||||||||||||||||||||| || ||||| |||||    
T  26744786 aatgggaatccacgttttaaaggagaaaagcaacacggaggaggatgtgatattca 26744841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 133 - 172
Target Start/End: Complemental strand, 27715178 - 27715139
Alignment:
Q  133 aaagattggtggaagtgggagtttcagagaaaggggagga 172  Q
    |||||||||||||||||||||||||||||| || ||||||    
T  27715178 aaagattggtggaagtgggagtttcagagacagaggagga 27715139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 244 - 310
Target Start/End: Original strand, 25077822 - 25077887
Alignment:
Q  244 catcataaagttaaccgtcttcttgttattctctcaatttcaacattgcaggtttgtgctttgttgt 310  Q
    |||| |||||||||||||||| ||||| || ||| |||  |||||||||||||||||| ||||||||    
T  25077822 catcgtaaagttaaccgtcttgttgttgtt-tcttaatcacaacattgcaggtttgtgttttgttgt 25077887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 244 - 290
Target Start/End: Complemental strand, 27423947 - 27423901
Alignment:
Q  244 catcataaagttaaccgtcttcttgttattctctcaatttcaacatt 290  Q
    |||||||||||||||||  || |||||||||||||||| ||||||||    
T  27423947 catcataaagttaaccgctttgttgttattctctcaatctcaacatt 27423901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 155 - 198
Target Start/End: Original strand, 25583153 - 25583193
Alignment:
Q  155 ttcagagaaaggggaggaggaggagggttttagtgacacggagg 198  Q
    ||||||||||||||||   |||||||||||||||||||||||||    
T  25583153 ttcagagaaaggggag---gaggagggttttagtgacacggagg 25583193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 57 - 94
Target Start/End: Original strand, 26626537 - 26626574
Alignment:
Q  57 caaatgggaatccacgtgtggaaggagaaaagcaacac 94  Q
    |||||||||||||| |||| ||||||||||||||||||    
T  26626537 caaatgggaatccatgtgttgaaggagaaaagcaacac 26626574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 56 - 97
Target Start/End: Original strand, 26659373 - 26659414
Alignment:
Q  56 gcaaatgggaatccacgtgtggaaggagaaaagcaacacgga 97  Q
    |||||| |||||||| |||| |||||||||||||||||||||    
T  26659373 gcaaattggaatccatgtgttgaaggagaaaagcaacacgga 26659414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 57 - 94
Target Start/End: Original strand, 26732514 - 26732551
Alignment:
Q  57 caaatgggaatccacgtgtggaaggagaaaagcaacac 94  Q
    |||||||||||||| |||| ||||||||||||||||||    
T  26732514 caaatgggaatccatgtgttgaaggagaaaagcaacac 26732551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 56 - 97
Target Start/End: Original strand, 26765344 - 26765385
Alignment:
Q  56 gcaaatgggaatccacgtgtggaaggagaaaagcaacacgga 97  Q
    |||||| |||||||| |||| |||||||||||||||||||||    
T  26765344 gcaaattggaatccatgtgttgaaggagaaaagcaacacgga 26765385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 57 - 93
Target Start/End: Complemental strand, 27657492 - 27657456
Alignment:
Q  57 caaatgggaatccacgtgtggaaggagaaaagcaaca 93  Q
    ||||||||||||||||||| |||| ||||||||||||    
T  27657492 caaatgggaatccacgtgttgaagaagaaaagcaaca 27657456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 56 - 92
Target Start/End: Original strand, 28789779 - 28789815
Alignment:
Q  56 gcaaatgggaatccacgtgtggaaggagaaaagcaac 92  Q
    ||||||||||||||||||| | |||||||||||||||    
T  28789779 gcaaatgggaatccacgtgagtaaggagaaaagcaac 28789815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349 (Bit Score: 37; Significance: 0.000000000009; HSPs: 3)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 250 - 306
Target Start/End: Original strand, 16852 - 16908
Alignment:
Q  250 aaagttaaccgtcttcttgttattctctcaatttcaacattgcaggtttgtgctttg 306  Q
    |||||||| ||||||||||||||||||||||| |||| | | |||||||||||||||    
T  16852 aaagttaatcgtcttcttgttattctctcaatctcaagaatacaggtttgtgctttg 16908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 57 - 99
Target Start/End: Original strand, 16641 - 16683
Alignment:
Q  57 caaatgggaatccacgtgtggaaggagaaaagcaacacggagg 99  Q
    ||||||||| ||||||||||||| |||||||||||||||||||    
T  16641 caaatgggagtccacgtgtggaatgagaaaagcaacacggagg 16683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 133 - 172
Target Start/End: Original strand, 16766 - 16805
Alignment:
Q  133 aaagattggtggaagtgggagtttcagagaaaggggagga 172  Q
    |||||||||||||||||||||||||||||| || ||||||    
T  16766 aaagattggtggaagtgggagtttcagagacagaggagga 16805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000009; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 57 - 97
Target Start/End: Complemental strand, 29270609 - 29270569
Alignment:
Q  57 caaatgggaatccacgtgtggaaggagaaaagcaacacgga 97  Q
    ||||||||||||||||||||||| |||||||||||||||||    
T  29270609 caaatgggaatccacgtgtggaatgagaaaagcaacacgga 29270569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 240 - 277
Target Start/End: Complemental strand, 29270366 - 29270329
Alignment:
Q  240 ggtccatcataaagttaaccgtcttcttgttattctct 277  Q
    ||||||| ||||||||||||||||||||||||||||||    
T  29270366 ggtccattataaagttaaccgtcttcttgttattctct 29270329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 133 - 172
Target Start/End: Complemental strand, 29270482 - 29270443
Alignment:
Q  133 aaagattggtggaagtgggagtttcagagaaaggggagga 172  Q
    |||||||||||||||||||||||||||||| || ||||||    
T  29270482 aaagattggtggaagtgggagtttcagagacagaggagga 29270443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 58 - 95
Target Start/End: Complemental strand, 18686395 - 18686358
Alignment:
Q  58 aaatgggaatccacgtgtggaaggagaaaagcaacacg 95  Q
    |||||||||||||||||||||||||||||| |||||||    
T  18686395 aaatgggaatccacgtgtggaaggagaaaaacaacacg 18686358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 58 - 122
Target Start/End: Complemental strand, 18652297 - 18652233
Alignment:
Q  58 aaatgggaatccacgtgtggaaggagaaaagcaacacggaggggggtgtgagattcattgatcct 122  Q
    |||||||||||||||||| ||||||||||| ||||||| | | || ||||| ||||||| |||||    
T  18652297 aaatgggaatccacgtgttgaaggagaaaaacaacacgaatgaggatgtgatattcattaatcct 18652233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 58 - 93
Target Start/End: Complemental strand, 18696201 - 18696166
Alignment:
Q  58 aaatgggaatccacgtgtggaaggagaaaagcaaca 93  Q
    ||||||||||||||||||||||||||||||| ||||    
T  18696201 aaatgggaatccacgtgtggaaggagaaaagtaaca 18696166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 58 - 95
Target Start/End: Complemental strand, 18676355 - 18676318
Alignment:
Q  58 aaatgggaatccacgtgtggaaggagaaaagcaacacg 95  Q
    ||||||||||||||||||| |||||||||| |||||||    
T  18676355 aaatgggaatccacgtgtgcaaggagaaaaacaacacg 18676318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 58 - 95
Target Start/End: Complemental strand, 18720885 - 18720848
Alignment:
Q  58 aaatgggaatccacgtgtggaaggagaaaagcaacacg 95  Q
    |||||||||||||||||| ||||||||||| |||||||    
T  18720885 aaatgggaatccacgtgttgaaggagaaaaacaacacg 18720848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 244 - 290
Target Start/End: Original strand, 63416 - 63462
Alignment:
Q  244 catcataaagttaaccgtcttcttgttattctctcaatttcaacatt 290  Q
    |||||||||||||||||  || |||||||||||||||| ||||||||    
T  63416 catcataaagttaaccgctttgttgttattctctcaatctcaacatt 63462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 56 - 92
Target Start/End: Complemental strand, 10420 - 10384
Alignment:
Q  56 gcaaatgggaatccacgtgtggaaggagaaaagcaac 92  Q
    ||||||||||||||||||| | |||||||||||||||    
T  10420 gcaaatgggaatccacgtgagtaaggagaaaagcaac 10384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University