View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2671_low_13 (Length: 341)

Name: NF2671_low_13
Description: NF2671
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2671_low_13
NF2671_low_13
[»] chr2 (30 HSPs)
chr2 (22-218)||(4416925-4417121)
chr2 (62-244)||(62762-62944)
chr2 (62-267)||(15807838-15808043)
chr2 (62-269)||(32607984-32608191)
chr2 (62-269)||(39280386-39280593)
chr2 (61-244)||(862254-862437)
chr2 (83-244)||(40097569-40097730)
chr2 (62-168)||(25757381-25757487)
chr2 (60-175)||(39282824-39282939)
chr2 (62-175)||(15806112-15806225)
chr2 (62-212)||(13999807-13999957)
chr2 (62-151)||(59837-59926)
chr2 (62-175)||(32607179-32607292)
chr2 (67-173)||(859982-860088)
chr2 (61-151)||(14001494-14001584)
chr2 (140-244)||(44709707-44709811)
chr2 (140-244)||(17696284-17696388)
chr2 (238-274)||(13999993-14000029)
chr2 (140-244)||(42519167-42519271)
chr2 (140-199)||(39664755-39664814)
chr2 (140-244)||(2767012-2767116)
chr2 (238-274)||(4416858-4416894)
chr2 (140-244)||(14389046-14389150)
chr2 (140-244)||(19908208-19908312)
chr2 (140-244)||(40560301-40560405)
chr2 (96-151)||(4415207-4415262)
chr2 (140-199)||(16377204-16377263)
chr2 (62-151)||(40099245-40099334)
chr2 (238-266)||(10716804-10716832)
chr2 (140-244)||(39455247-39455351)
[»] scaffold0092 (2 HSPs)
scaffold0092 (62-269)||(36767-36974)
scaffold0092 (62-175)||(34599-34712)
[»] chr7 (30 HSPs)
chr7 (62-244)||(6056766-6056948)
chr7 (62-244)||(31913469-31913651)
chr7 (62-243)||(23962304-23962485)
chr7 (74-244)||(46867877-46868046)
chr7 (62-175)||(31915049-31915162)
chr7 (62-175)||(23966078-23966191)
chr7 (62-244)||(17198928-17199098)
chr7 (62-151)||(25971680-25971769)
chr7 (62-151)||(46866465-46866554)
chr7 (140-244)||(37796123-37796227)
chr7 (140-243)||(34776858-34776961)
chr7 (143-244)||(13168204-13168305)
chr7 (140-244)||(6602413-6602517)
chr7 (140-244)||(35693312-35693416)
chr7 (143-199)||(37115513-37115569)
chr7 (65-151)||(6058472-6058558)
chr7 (140-244)||(39859171-39859275)
chr7 (242-274)||(46867828-46867860)
chr7 (140-243)||(23953883-23953986)
chr7 (140-199)||(30940412-30940471)
chr7 (103-170)||(43009325-43009392)
chr7 (244-274)||(6056967-6056997)
chr7 (140-242)||(45359414-45359516)
chr7 (238-268)||(48704375-48704405)
chr7 (238-274)||(13034868-13034904)
chr7 (242-274)||(17199115-17199147)
chr7 (144-244)||(24228351-24228451)
chr7 (144-240)||(27955452-27955548)
chr7 (140-244)||(33038739-33038843)
chr7 (147-199)||(47386196-47386248)
[»] chr1 (20 HSPs)
chr1 (63-244)||(43868615-43868796)
chr1 (62-269)||(51544135-51544342)
chr1 (62-175)||(51546303-51546415)
chr1 (62-151)||(43870316-43870405)
chr1 (140-244)||(6818620-6818724)
chr1 (140-244)||(15104519-15104623)
chr1 (140-244)||(4855909-4856012)
chr1 (140-244)||(27087361-27087464)
chr1 (238-274)||(43868809-43868845)
chr1 (145-244)||(37344425-37344524)
chr1 (157-243)||(31801728-31801814)
chr1 (140-244)||(25278310-25278414)
chr1 (140-244)||(31238437-31238541)
chr1 (140-244)||(33602586-33602690)
chr1 (140-244)||(34778081-34778184)
chr1 (140-243)||(36895453-36895556)
chr1 (140-199)||(51896139-51896198)
chr1 (162-244)||(3013412-3013494)
chr1 (147-244)||(2869664-2869761)
chr1 (140-244)||(50556039-50556143)
[»] chr3 (27 HSPs)
chr3 (60-244)||(5125799-5125983)
chr3 (62-244)||(54092686-54092868)
chr3 (62-244)||(5132996-5133178)
chr3 (62-244)||(41623652-41623834)
chr3 (62-151)||(41625353-41625442)
chr3 (62-151)||(5127449-5127538)
chr3 (62-151)||(5134704-5134793)
chr3 (140-244)||(23293132-23293236)
chr3 (140-244)||(27899043-27899147)
chr3 (140-244)||(53190722-53190825)
chr3 (62-151)||(54094165-54094254)
chr3 (238-274)||(5125996-5126032)
chr3 (140-244)||(7884836-7884939)
chr3 (140-244)||(21348801-21348905)
chr3 (140-244)||(42279585-42279689)
chr3 (140-244)||(51684688-51684792)
chr3 (157-258)||(40508839-40508940)
chr3 (140-240)||(17515388-17515488)
chr3 (135-243)||(23888715-23888823)
chr3 (238-274)||(41623847-41623883)
chr3 (144-244)||(43765219-43765319)
chr3 (140-244)||(46112565-46112669)
chr3 (157-244)||(48830768-48830855)
chr3 (158-244)||(600805-600891)
chr3 (144-244)||(2377111-2377211)
chr3 (140-240)||(30599884-30599984)
chr3 (143-243)||(45257163-45257263)
[»] scaffold0129 (2 HSPs)
scaffold0129 (62-244)||(4459-4641)
scaffold0129 (62-175)||(6037-6150)
[»] chr8 (22 HSPs)
chr8 (62-269)||(37801466-37801673)
chr8 (62-244)||(15145704-15145886)
chr8 (62-274)||(44526619-44526831)
chr8 (65-175)||(44528151-44528261)
chr8 (65-174)||(15142963-15143071)
chr8 (62-175)||(37803639-37803752)
chr8 (140-244)||(22272414-22272518)
chr8 (144-244)||(26242276-26242376)
chr8 (140-199)||(13282556-13282615)
chr8 (238-274)||(6164698-6164734)
chr8 (140-244)||(8609750-8609853)
chr8 (141-244)||(9673127-9673230)
chr8 (145-244)||(11722751-11722850)
chr8 (145-243)||(8654582-8654680)
chr8 (140-244)||(7745074-7745178)
chr8 (140-244)||(13108299-13108402)
chr8 (140-244)||(38547306-38547409)
chr8 (140-244)||(42941852-42941956)
chr8 (140-199)||(41042591-41042650)
chr8 (140-244)||(9184461-9184565)
chr8 (241-269)||(11788519-11788547)
chr8 (140-244)||(13486061-13486165)
[»] chr6 (13 HSPs)
chr6 (62-269)||(11163800-11164007)
chr6 (65-244)||(25172051-25172230)
chr6 (62-151)||(25170297-25170386)
chr6 (140-244)||(7049835-7049939)
chr6 (140-244)||(10568477-10568581)
chr6 (140-244)||(20523444-20523548)
chr6 (140-244)||(6899563-6899667)
chr6 (141-244)||(11355301-11355404)
chr6 (141-196)||(14338465-14338520)
chr6 (145-199)||(32516960-32517014)
chr6 (140-244)||(9398738-9398842)
chr6 (238-266)||(14338376-14338404)
chr6 (238-266)||(30891319-30891347)
[»] chr4 (20 HSPs)
chr4 (62-274)||(44972411-44972625)
chr4 (62-244)||(50131162-50131344)
chr4 (62-244)||(27382117-27382299)
chr4 (62-269)||(37480946-37481153)
chr4 (62-244)||(26296836-26297018)
chr4 (60-175)||(37474142-37474256)
chr4 (62-149)||(50133102-50133188)
chr4 (62-151)||(44974101-44974190)
chr4 (141-243)||(35996142-35996244)
chr4 (140-244)||(11601748-11601852)
chr4 (140-244)||(42980713-42980817)
chr4 (144-266)||(52868069-52868191)
chr4 (238-274)||(27382312-27382348)
chr4 (140-244)||(41761688-41761792)
chr4 (140-244)||(48646689-48646793)
chr4 (140-244)||(49523202-49523306)
chr4 (141-244)||(35404387-35404490)
chr4 (140-199)||(41781617-41781676)
chr4 (73-131)||(9590312-9590370)
chr4 (226-268)||(13450916-13450962)
[»] scaffold0204 (2 HSPs)
scaffold0204 (62-244)||(30413-30595)
scaffold0204 (62-175)||(28341-28454)
[»] chr5 (11 HSPs)
chr5 (62-191)||(15459184-15459313)
chr5 (140-244)||(8539753-8539857)
chr5 (140-244)||(18624950-18625054)
chr5 (140-244)||(30468222-30468326)
chr5 (142-244)||(36057555-36057657)
chr5 (140-244)||(17574396-17574499)
chr5 (141-244)||(2179866-2179969)
chr5 (140-244)||(34327713-34327817)
chr5 (140-199)||(7267921-7267980)
chr5 (238-269)||(13452086-13452117)
chr5 (141-244)||(24496822-24496925)
[»] scaffold1454 (1 HSPs)
scaffold1454 (140-199)||(1341-1400)
[»] scaffold0722 (1 HSPs)
scaffold0722 (241-269)||(4747-4775)


Alignment Details
Target: chr2 (Bit Score: 161; Significance: 8e-86; HSPs: 30)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 161; E-Value: 8e-86
Query Start/End: Original strand, 22 - 218
Target Start/End: Complemental strand, 4417121 - 4416925
Alignment:
Q  22 tgtatatccataagataagcatttcacataaattaataacgagtgaatacccaaattcgttcctgaattttcacgaatcgaacaaaaacgtcccccaatt 121  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||    
T  4417121 tgtatatccataagataagcatttcacataaattaataacgagtgaatacccaaatttgtccctgaattttcacgaatcgaacaaaaacgtcccccaatt 4417022  T
Q  122 catcgaaatgcacgctttgtccctgaatttaacaaacgtccatcaaaatagtccttccgtacaaatgctccgttagtgttgctgagttgtcgtcatg 218  Q
    |||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||  |||||||| |||| ||||| |||||||||||||||    
T  4417021 catcgaaatgcacgttttgtccctgaatttaacaaacgtccataaaaatagtccttccgtctaaatgctctgttaatgttgttgagttgtcgtcatg 4416925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 62 - 244
Target Start/End: Complemental strand, 62944 - 62762
Alignment:
Q  62 gagtgaatacccaaattcgttcctgaattttcacgaatcgaacaaaaacgtcccccaattcatcgaaatgcacgctttgtccctgaatttaacaaacgtc 161  Q
    |||||||||||||||||||| |||| |||||||||||||  ||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  62944 gagtgaatacccaaattcgtccctggattttcacgaatccgacaaaaatgtcccccaattaatcgaaatgcacgctttgtccctgaatttaacaaacgtc 62845  T
Q  162 catcaaaatagtccttccgtacaaatgctccgttagtgttgctgagttgtcgtcatgcatgtcatgttgtcttgtacacgtgt 244  Q
    |||||||||||||||||||| ||||||||||| ||||| |||||||||||||||||||||||||||||| |||||||||||||    
T  62844 catcaaaatagtccttccgtccaaatgctccgctagtgctgctgagttgtcgtcatgcatgtcatgttgccttgtacacgtgt 62762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 62 - 267
Target Start/End: Complemental strand, 15808043 - 15807838
Alignment:
Q  62 gagtgaatacccaaattcgttcctgaattttcacgaatcgaacaaaaacgtcccccaattcatcgaaatgcacgctttgtccctgaatttaacaaacgtc 161  Q
    |||||||||||||||||||| |||| |||| |||||||||  ||||||||||||||||||  ||||||||||||||| ||||||||||||||||||||||    
T  15808043 gagtgaatacccaaattcgtccctggatttgcacgaatcggccaaaaacgtcccccaattagtcgaaatgcacgcttagtccctgaatttaacaaacgtc 15807944  T
Q  162 catcaaaatagtccttccgtacaaatgctccgttagtgttgctgagttgtcgtcatgcatgtcatgttgtcttgtacacgtgtacaaggaccaatttgat 261  Q
     |||||| |||||||||||| ||||||| ||||||||| |||||||||||| || |||||| | ||||||||||||||||||||||||||| ||||||||    
T  15807943 aatcaaattagtccttccgtccaaatgcaccgttagtggtgctgagttgtcttcctgcatgacttgttgtcttgtacacgtgtacaaggacgaatttgat 15807844  T
Q  262 ggaaac 267  Q
     |||||    
T  15807843 tgaaac 15807838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 62 - 269
Target Start/End: Complemental strand, 32608191 - 32607984
Alignment:
Q  62 gagtgaatacccaaattcgttcctgaattttcacgaatcgaacaaaaacgtcccccaattcatcgaaatgcacgctttgtccctgaatttaacaaacgtc 161  Q
    ||||||||||||||||| || |||| |||| |||||||||  ||||||||||||||||||  ||||||||||||||| ||||||||||||||||||||||    
T  32608191 gagtgaatacccaaatttgtccctggatttacacgaatcggccaaaaacgtcccccaattagtcgaaatgcacgcttagtccctgaatttaacaaacgtc 32608092  T
Q  162 catcaaaatagtccttccgtacaaatgctccgttagtgttgctgagttgtcgtcatgcatgtcatgttgtcttgtacacgtgtacaaggaccaatttgat 261  Q
     |||||| |||||||||||| ||||||| ||||||||| |||||||||||| || |||||| | |||||||||||||||||||||||||||  |||||||    
T  32608091 aatcaaattagtccttccgtccaaatgcaccgttagtggtgctgagttgtcttcctgcatggcttgttgtcttgtacacgtgtacaaggacgtatttgat 32607992  T
Q  262 ggaaacgc 269  Q
     |||||||    
T  32607991 tgaaacgc 32607984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 62 - 269
Target Start/End: Original strand, 39280386 - 39280593
Alignment:
Q  62 gagtgaatacccaaattcgttcctgaattttcacgaatcgaacaaaaacgtcccccaattcatcgaaatgcacgctttgtccctgaatttaacaaacgtc 161  Q
    ||||||||||||||||||||  ||| ||||  ||||||||  ||||||||||||| ||||  ||||||||||||||| ||||||||||||||||||||||    
T  39280386 gagtgaatacccaaattcgtctctggatttgtacgaatcggccaaaaacgtcccctaattagtcgaaatgcacgcttagtccctgaatttaacaaacgtc 39280485  T
Q  162 catcaaaatagtccttccgtacaaatgctccgttagtgttgctgagttgtcgtcatgcatgtcatgttgtcttgtacacgtgtacaaggaccaatttgat 261  Q
     |||||| |||||||| |||  |||||| ||||||||| |||||||||||| || |||||| | ||||||||||||||||||||||||||| ||||||||    
T  39280486 aatcaaattagtcctttcgtttaaatgcaccgttagtggtgctgagttgtcttcctgcatggcttgttgtcttgtacacgtgtacaaggacgaatttgat 39280585  T
Q  262 ggaaacgc 269  Q
     |||||||    
T  39280586 tgaaacgc 39280593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 61 - 244
Target Start/End: Complemental strand, 862437 - 862254
Alignment:
Q  61 cgagtgaatacccaaattcgttcctgaattttcacgaatcgaacaaaaacgtcccccaattcatcgaaatgcacgctttgtccctgaatttaacaaacgt 160  Q
    ||||| |||||||||||| || |||  |||||||||||||| |||||||||| |||||||| |||||||||||| ||||||| |||||||||| ||||||    
T  862437 cgagtcaatacccaaatttgtccctagattttcacgaatcggacaaaaacgtaccccaattaatcgaaatgcacactttgtctctgaatttaataaacgt 862338  T
Q  161 ccatcaaaatagtccttccgtacaaatgctccgttagtgttgctgagttgtcgtcatgcatgtcatgttgtcttgtacacgtgt 244  Q
    | ||||||||||||||||||| ||||||||||||||||| || ||||||||| || |||||| | |||||||||||||||||||    
T  862337 caatcaaaatagtccttccgtccaaatgctccgttagtgctgttgagttgtcttcctgcatggcttgttgtcttgtacacgtgt 862254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 83 - 244
Target Start/End: Original strand, 40097569 - 40097730
Alignment:
Q  83 cctgaattttcacgaatcgaacaaaaacgtcccccaattcatcgaaatgcacgctttgtccctgaatttaacaaacgtccatcaaaatagtccttccgta 182  Q
    ||||||||| |||||||||  |||||| |||||| |||| ||||||||||||||||||| |||||||||||||||||||||| ||||| | | |||| |     
T  40097569 cctgaatttgcacgaatcgggcaaaaatgtccccaaatttatcgaaatgcacgctttgttcctgaatttaacaaacgtccattaaaatggccattccatc 40097668  T
Q  183 caaatgctccgttagtgttgctgagttgtcgtcatgcatgtcatgttgtcttgtacacgtgt 244  Q
    |||||||||  |||||| ||||||||||||||| |||||||| ||||||||| || ||||||    
T  40097669 caaatgctctattagtgctgctgagttgtcgtcttgcatgtcgtgttgtcttatatacgtgt 40097730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 62 - 168
Target Start/End: Original strand, 25757381 - 25757487
Alignment:
Q  62 gagtgaatacccaaattcgttcctgaattttcacgaatcgaacaaaaacgtcccccaattcatcgaaatgcacgctttgtccctgaatttaacaaacgtc 161  Q
    |||||||||||||||||||| ||||||||| ||||||||  ||||||| ||||||||||| |||||||||||| |||||||||||||||||||||||||     
T  25757381 gagtgaatacccaaattcgtccctgaatttgcacgaatcagacaaaaatgtcccccaatttatcgaaatgcacactttgtccctgaatttaacaaacgtt 25757480  T
Q  162 catcaaa 168  Q
    |||||||    
T  25757481 catcaaa 25757487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 60 - 175
Target Start/End: Complemental strand, 39282939 - 39282824
Alignment:
Q  60 acgagtgaatacccaaattcgttcctgaattttcacgaatcgaacaaaaacgtcccccaattcatcgaaatgcacgctttgtccctgaatttaacaaacg 159  Q
    |||||||||||||||||||| | ||||||||| |||||||||  ||||||||||||||||||  |||||||||||||||  |||||||||||||||||||    
T  39282939 acgagtgaatacccaaattcttccctgaatttgcacgaatcggccaaaaacgtcccccaattagtcgaaatgcacgcttaatccctgaatttaacaaacg 39282840  T
Q  160 tccatcaaaatagtcc 175  Q
    || |||||| ||||||    
T  39282839 tcaatcaaattagtcc 39282824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 62 - 175
Target Start/End: Original strand, 15806112 - 15806225
Alignment:
Q  62 gagtgaatacccaaattcgttcctgaattttcacgaatcgaacaaaaacgtcccccaattcatcgaaatgcacgctttgtccctgaatttaacaaacgtc 161  Q
    |||||||||||||||||||| |||| |||| |||||||||  |||||| |||||||||||  ||||||||||||||| ||||||||||||||||||||||    
T  15806112 gagtgaatacccaaattcgtccctggatttgcacgaatcggccaaaaatgtcccccaattagtcgaaatgcacgcttagtccctgaatttaacaaacgtc 15806211  T
Q  162 catcaaaatagtcc 175  Q
     |||||| ||||||    
T  15806212 aatcaaattagtcc 15806225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 62 - 212
Target Start/End: Original strand, 13999807 - 13999957
Alignment:
Q  62 gagtgaatacccaaattcgttcctgaattttcacgaatcgaacaaaaacgtcccccaattcatcgaaatgcacgctttgtccctgaatttaacaaacgtc 161  Q
    |||||||||  ||||||||| | ||||||| ||||||||  | ||||| |||    |||| |||||||||||| |||||||  |||||||||||||||||    
T  13999807 gagtgaatatacaaattcgtccttgaatttgcacgaatcagataaaaatgtcttttaatttatcgaaatgcacactttgtctttgaatttaacaaacgtc 13999906  T
Q  162 catcaaaatagtccttccgtacaaatgctccgttagtgttgctgagttgtc 212  Q
    |||||||||||||||||||| |||||||||| |||||| ||||||| ||||    
T  13999907 catcaaaatagtccttccgtccaaatgctccattagtgctgctgagctgtc 13999957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 62 - 151
Target Start/End: Original strand, 59837 - 59926
Alignment:
Q  62 gagtgaatacccaaattcgttcctgaattttcacgaatcgaacaaaaacgtcccccaattcatcgaaatgcacgctttgtccctgaattt 151  Q
    ||||||||||||||||| || ||||||||| ||||||||  |||||||| |||| |||||||||||||||||||||||||||||||||||    
T  59837 gagtgaatacccaaatttgtccctgaatttgcacgaatcagacaaaaacatccctcaattcatcgaaatgcacgctttgtccctgaattt 59926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 62 - 175
Target Start/End: Original strand, 32607179 - 32607292
Alignment:
Q  62 gagtgaatacccaaattcgttcctgaattttcacgaatcgaacaaaaacgtcccccaattcatcgaaatgcacgctttgtccctgaatttaacaaacgtc 161  Q
    |||||||||| |||||| || |||| |||| |||||||||  |||||||||| |||||||  ||||||||||||||| |||||| |||||||||||||||    
T  32607179 gagtgaatactcaaatttgtccctggatttgcacgaatcggccaaaaacgtctcccaattagtcgaaatgcacgcttagtccctaaatttaacaaacgtc 32607278  T
Q  162 catcaaaatagtcc 175  Q
     |||||| ||||||    
T  32607279 aatcaaattagtcc 32607292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 67 - 173
Target Start/End: Original strand, 859982 - 860088
Alignment:
Q  67 aatacccaaattcgttcctgaattttcacgaatcgaacaaaaacgtcccccaattcatcgaaatgcacgctttgtccctgaatttaacaaacgtccatca 166  Q
    |||| |||||| |||||||||||||| |||||||| | |||||| |||  ||||| |||||||||||   ||  ||||||||||||||||||||| ||||    
T  859982 aatatccaaatccgttcctgaatttttacgaatcggataaaaacatccttcaattaatcgaaatgcatatttcatccctgaatttaacaaacgtcaatca 860081  T
Q  167 aaatagt 173  Q
    |||||||    
T  860082 aaatagt 860088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 61 - 151
Target Start/End: Complemental strand, 14001584 - 14001494
Alignment:
Q  61 cgagtgaatacccaaattcgttcctgaattttcacgaatcgaacaaaaacgtcccccaattcatcgaaatgcacgctttgtccctgaattt 151  Q
    ||||||||||||||||| ||| | ||||||| || |||||  ||||||||||||||||||| |||||||||||| |||| ||||| |||||    
T  14001584 cgagtgaatacccaaatccgtccatgaatttgcatgaatcagacaaaaacgtcccccaatttatcgaaatgcacactttatccctaaattt 14001494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 140 - 244
Target Start/End: Complemental strand, 44709811 - 44709707
Alignment:
Q  140 gtccctgaatttaacaaacgtccatcaaaatagtccttccgtacaaatgctccgttagtgttgctgagttgtcgtcatgcatgtcatgttgtcttgtaca 239  Q
    |||||||||||| ||| |||||||||||||| |||| ||||| |||| ||| |||||||| || |||  |||| || |||||||  ||||||||||||||    
T  44709811 gtccctgaattttacagacgtccatcaaaatggtccctccgtccaaaagcttcgttagtggtgatgatatgtcctcttgcatgttgtgttgtcttgtaca 44709712  T
Q  240 cgtgt 244  Q
    |||||    
T  44709711 cgtgt 44709707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 140 - 244
Target Start/End: Original strand, 17696284 - 17696388
Alignment:
Q  140 gtccctgaatttaacaaacgtccatcaaaatagtccttccgtacaaatgctccgttagtgttgctgagttgtcgtcatgcatgtcatgttgtcttgtaca 239  Q
    |||||||||||| ||||||||| |||||||| |||  ||||| |||| |||||||||||| || |||  |||| || |||||||  ||||||| ||||||    
T  17696284 gtccctgaattttacaaacgtcaatcaaaatggtcactccgtccaaaagctccgttagtggtgatgatgtgtcatcttgcatgttgtgttgtcctgtaca 17696383  T
Q  240 cgtgt 244  Q
    |||||    
T  17696384 cgtgt 17696388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 238 - 274
Target Start/End: Original strand, 13999993 - 14000029
Alignment:
Q  238 cacgtgtacaaggaccaatttgatggaaacgctaaaa 274  Q
    |||||||||||||||||||||||||||||||||||||    
T  13999993 cacgtgtacaaggaccaatttgatggaaacgctaaaa 14000029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 140 - 244
Target Start/End: Complemental strand, 42519271 - 42519167
Alignment:
Q  140 gtccctgaatttaacaaacgtccatcaaaatagtccttccgtacaaatgctccgttagtgttgctgagttgtcgtcatgcatgtcatgttgtcttgtaca 239  Q
    |||||||||||| ||| |||||||||||||| |||| ||| | |||| |||||||||||| || |||  |||| || ||||||   ||||||| ||||||    
T  42519271 gtccctgaattttacagacgtccatcaaaatggtccctccatccaaaagctccgttagtggtgatgatgtgtcctcttgcatgctgtgttgtcctgtaca 42519172  T
Q  240 cgtgt 244  Q
    |||||    
T  42519171 cgtgt 42519167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 140 - 199
Target Start/End: Complemental strand, 39664814 - 39664755
Alignment:
Q  140 gtccctgaatttaacaaacgtccatcaaaatagtccttccgtacaaatgctccgttagtg 199  Q
    |||||||||||| ||| |||||||||||||| |||| ||||| |||| ||||||||||||    
T  39664814 gtccctgaattttacagacgtccatcaaaatggtccctccgtccaaaagctccgttagtg 39664755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 140 - 244
Target Start/End: Original strand, 2767012 - 2767116
Alignment:
Q  140 gtccctgaatttaacaaacgtccatcaaaatagtccttccgtacaaatgctccgttagtgttgctgagttgtcgtcatgcatgtcatgttgtcttgtaca 239  Q
    |||||||||||| ||| ||||| |||||||| |||| || || |||| |||||||||||| || |||  |||| || || ||||  ||||||| ||||||    
T  2767012 gtccctgaattttacagacgtctatcaaaatggtccctctgtccaaaagctccgttagtggtgatgatgtgtcctcttgtatgttgtgttgtcctgtaca 2767111  T
Q  240 cgtgt 244  Q
    |||||    
T  2767112 cgtgt 2767116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 238 - 274
Target Start/End: Complemental strand, 4416894 - 4416858
Alignment:
Q  238 cacgtgtacaaggaccaatttgatggaaacgctaaaa 274  Q
    |||||||||||||||||||||||||||||||| ||||    
T  4416894 cacgtgtacaaggaccaatttgatggaaacgccaaaa 4416858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 140 - 244
Target Start/End: Complemental strand, 14389150 - 14389046
Alignment:
Q  140 gtccctgaatttaacaaacgtccatcaaaatagtccttccgtacaaatgctccgttagtgttgctgagttgtcgtcatgcatgtcatgttgtcttgtaca 239  Q
    ||||||||||||  |||| |||||||||||| |||| ||||| |||| | | |||||||  || |||  |||| || |||||||  ||||||||||||||    
T  14389150 gtccctgaattttccaaatgtccatcaaaatggtccctccgtccaaaagtttcgttagtagtgatgatgtgtcctcttgcatgttgtgttgtcttgtaca 14389051  T
Q  240 cgtgt 244  Q
    |||||    
T  14389050 cgtgt 14389046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 140 - 244
Target Start/End: Complemental strand, 19908312 - 19908208
Alignment:
Q  140 gtccctgaatttaacaaacgtccatcaaaatagtccttccgtacaaatgctccgttagtgttgctgagttgtcgtcatgcatgtcatgttgtcttgtaca 239  Q
    |||| ||||||| ||| |||||| ||||||| |||| ||||| |||| |||||||||||| || |||  |||| || ||||||   ||||||| ||||||    
T  19908312 gtccttgaattttacagacgtccgtcaaaatggtccctccgtccaaaagctccgttagtggtgatgacgtgtcctcttgcatgctgtgttgtcatgtaca 19908213  T
Q  240 cgtgt 244  Q
    |||||    
T  19908212 cgtgt 19908208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 140 - 244
Target Start/End: Original strand, 40560301 - 40560405
Alignment:
Q  140 gtccctgaatttaacaaacgtccatcaaaatagtccttccgtacaaatgctccgttagtgttgctgagttgtcgtcatgcatgtcatgttgtcttgtaca 239  Q
    |||||||||||| ||| ||||||||||||||||||| ||||| |||| | || ||||||| || |||  |||| || ||||||   ||||||| |||||     
T  40560301 gtccctgaattttacagacgtccatcaaaatagtccctccgtccaaaagttctgttagtggtgatgatgtgtcctcttgcatgctgtgttgtcatgtacg 40560400  T
Q  240 cgtgt 244  Q
    |||||    
T  40560401 cgtgt 40560405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 96 - 151
Target Start/End: Original strand, 4415207 - 4415262
Alignment:
Q  96 gaatcgaacaaaaacgtcccccaattcatcgaaatgcacgctttgtccctgaattt 151  Q
    ||||| ||||||||| |||||||||| ||| ||||||||||||| | |||||||||    
T  4415207 gaatcaaacaaaaacatcccccaatttatcaaaatgcacgctttattcctgaattt 4415262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 140 - 199
Target Start/End: Complemental strand, 16377263 - 16377204
Alignment:
Q  140 gtccctgaatttaacaaacgtccatcaaaatagtccttccgtacaaatgctccgttagtg 199  Q
    |||| ||||||| ||| |||||||||||||| |||| ||||| |||| ||||||||||||    
T  16377263 gtccttgaattttacatacgtccatcaaaatggtccctccgtccaaaagctccgttagtg 16377204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 62 - 151
Target Start/End: Complemental strand, 40099334 - 40099245
Alignment:
Q  62 gagtgaatacccaaattcgttcctgaattttcacgaatcgaacaaaaacgtcccccaattcatcgaaatgcacgctttgtccctgaattt 151  Q
    |||||||||| ||||||||| ||||||||| || |||||| |||||||  ||  || ||  |||||| ||||||||||||| || |||||    
T  40099334 gagtgaatactcaaattcgtccctgaatttgcatgaatcggacaaaaatatcatccgatgtatcgaattgcacgctttgtcgctaaattt 40099245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 238 - 266
Target Start/End: Complemental strand, 10716832 - 10716804
Alignment:
Q  238 cacgtgtacaaggaccaatttgatggaaa 266  Q
    |||||||||||||||||||||||||||||    
T  10716832 cacgtgtacaaggaccaatttgatggaaa 10716804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 140 - 244
Target Start/End: Original strand, 39455247 - 39455351
Alignment:
Q  140 gtccctgaatttaacaaacgtccatcaaaatagtccttccgtacaaatgctccgttagtgttgctgagttgtcgtcatgcatgtcatgttgtcttgtaca 239  Q
    |||| ||||||| ||| |||||||||||||| |||  ||||| |||| ||||||||||||  | |||  || | || |||||||  ||||||| ||||||    
T  39455247 gtccatgaattttacagacgtccatcaaaatggtctctccgttcaaaagctccgttagtggcgatgatgtgccctcttgcatgttgtgttgtcatgtaca 39455346  T
Q  240 cgtgt 244  Q
    |||||    
T  39455347 cgtgt 39455351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0092 (Bit Score: 132; Significance: 2e-68; HSPs: 2)
Name: scaffold0092
Description:

Target: scaffold0092; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 62 - 269
Target Start/End: Complemental strand, 36974 - 36767
Alignment:
Q  62 gagtgaatacccaaattcgttcctgaattttcacgaatcgaacaaaaacgtcccccaattcatcgaaatgcacgctttgtccctgaatttaacaaacgtc 161  Q
    |||||||||||||||||| | ||||||||| |||||||||  ||||||||||||||||||  ||||||||||||||| ||||||||||||||||||||||    
T  36974 gagtgaatacccaaattcatccctgaatttgcacgaatcggccaaaaacgtcccccaattagtcgaaatgcacgcttagtccctgaatttaacaaacgtc 36875  T
Q  162 catcaaaatagtccttccgtacaaatgctccgttagtgttgctgagttgtcgtcatgcatgtcatgttgtcttgtacacgtgtacaaggaccaatttgat 261  Q
     |||||| |||||||||||| ||||||| ||||||||| |||||||||||| || |||||| | ||||||||||||||||||||||||||| ||||||||    
T  36874 aatcaaattagtccttccgtccaaatgcaccgttagtggtgctgagttgtcttcctgcatggcttgttgtcttgtacacgtgtacaaggacgaatttgat 36775  T
Q  262 ggaaacgc 269  Q
     |||||||    
T  36774 tgaaacgc 36767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0092; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 62 - 175
Target Start/End: Original strand, 34599 - 34712
Alignment:
Q  62 gagtgaatacccaaattcgttcctgaattttcacgaatcgaacaaaaacgtcccccaattcatcgaaatgcacgctttgtccctgaatttaacaaacgtc 161  Q
    ||||||||| |||||||||| | || |||| |||||||||  ||||||||||||  ||||  ||||||||||||||| ||||||||||||||||||||||    
T  34599 gagtgaataaccaaattcgtccttggatttgcacgaatcggtcaaaaacgtcccttaatttgtcgaaatgcacgcttagtccctgaatttaacaaacgtc 34698  T
Q  162 catcaaaatagtcc 175  Q
     |||||| ||||||    
T  34699 aatcaaattagtcc 34712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 131; Significance: 6e-68; HSPs: 30)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 62 - 244
Target Start/End: Original strand, 6056766 - 6056948
Alignment:
Q  62 gagtgaatacccaaattcgttcctgaattttcacgaatcgaacaaaaacgtcccccaattcatcgaaatgcacgctttgtccctgaatttaacaaacgtc 161  Q
    |||||||||||||||||||| ||||||||| ||||||||| |||||||||||| |||||| |||||||||||| |||||||| |||||||||||||||||    
T  6056766 gagtgaatacccaaattcgtccctgaatttgcacgaatcggacaaaaacgtcctccaatttatcgaaatgcacactttgtccttgaatttaacaaacgtc 6056865  T
Q  162 catcaaaatagtccttccgtacaaatgctccgttagtgttgctgagttgtcgtcatgcatgtcatgttgtcttgtacacgtgt 244  Q
    |||||||||||||||||||| ||||||||||||||||| ||||||| ||||||| |||||||| |||||| ||||||||||||    
T  6056866 catcaaaatagtccttccgtccaaatgctccgttagtgctgctgagctgtcgtcctgcatgtcctgttgtattgtacacgtgt 6056948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 62 - 244
Target Start/End: Original strand, 31913469 - 31913651
Alignment:
Q  62 gagtgaatacccaaattcgttcctgaattttcacgaatcgaacaaaaacgtcccccaattcatcgaaatgcacgctttgtccctgaatttaacaaacgtc 161  Q
    ||||||||| |||||||||| |||| |||||||||||||| ||||||||||||||| ||| |||||||||||||||||||||||||||| ||||||||||    
T  31913469 gagtgaatatccaaattcgtccctggattttcacgaatcggacaaaaacgtcccccgattaatcgaaatgcacgctttgtccctgaattcaacaaacgtc 31913568  T
Q  162 catcaaaatagtccttccgtacaaatgctccgttagtgttgctgagttgtcgtcatgcatgtcatgttgtcttgtacacgtgt 244  Q
    |||||||||||| ||||||| ||||||||||||||||||||||||||||||||| |||||| | |||||||||| ||||||||    
T  31913569 catcaaaatagttcttccgtccaaatgctccgttagtgttgctgagttgtcgtcctgcatggcttgttgtcttgcacacgtgt 31913651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 62 - 243
Target Start/End: Original strand, 23962304 - 23962485
Alignment:
Q  62 gagtgaatacccaaattcgttcctgaattttcacgaatcgaacaaaaacgtcccccaattcatcgaaatgcacgctttgtccctgaatttaacaaacgtc 161  Q
    ||||||||| |||||||||| |||  |||||||||||||| |||||||||||| | |||| ||||||| ||||  |||||||||||||||||||||||||    
T  23962304 gagtgaatatccaaattcgtccctagattttcacgaatcggacaaaaacgtcctcaaattaatcgaaacgcacattttgtccctgaatttaacaaacgtc 23962403  T
Q  162 catcaaaatagtccttccgtacaaatgctccgttagtgttgctgagttgtcgtcatgcatgtcatgttgtcttgtacacgtg 243  Q
     |||||||||||||||||||  |||||||||||||||| |||||||||||| || |||||| | ||||||||||||||||||    
T  23962404 aatcaaaatagtccttccgtcaaaatgctccgttagtgctgctgagttgtcttcctgcatggcttgttgtcttgtacacgtg 23962485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 74 - 244
Target Start/End: Complemental strand, 46868046 - 46867877
Alignment:
Q  74 aaattcgttcctgaattttcacgaatcgaacaaaaacgtcccccaattcatcgaaatgcacgctttgtccctgaatttaacaaacgtccatcaaaatagt 173  Q
    ||||| || ||||||||| ||||||||| |||||||||||| |||||| |||||||||||| | ||||| ||||||||||| ||| | ||||||||||||    
T  46868046 aaatttgtccctgaatttgcacgaatcggacaaaaacgtcctccaatttatcgaaatgcacaccttgtctctgaatttaacgaacattcatcaaaatagt 46867947  T
Q  174 ccttccgtacaaatgctccgttagtgttgctgagttgtcgtcatgcatgtcatgttgtcttgtacacgtgt 244  Q
     ||||||| ||||||||||||||||| ||||||| ||||||| |||||| |||||||||||||||||||||    
T  46867946 tcttccgtccaaatgctccgttagtgctgctgagctgtcgtcctgcatg-catgttgtcttgtacacgtgt 46867877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 62 - 175
Target Start/End: Complemental strand, 31915162 - 31915049
Alignment:
Q  62 gagtgaatacccaaattcgttcctgaattttcacgaatcgaacaaaaacgtcccccaattcatcgaaatgcacgctttgtccctgaatttaacaaacgtc 161  Q
    ||||||||| |||||||||||| || |||||||||||||| |||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||    
T  31915162 gagtgaatatccaaattcgttcttggattttcacgaatcggacaaaaacgtcccctaattaatcgaaatgcacgctttgtccctgaatttaacaaacgtc 31915063  T
Q  162 catcaaaatagtcc 175  Q
    ||||||||||||||    
T  31915062 catcaaaatagtcc 31915049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 62 - 175
Target Start/End: Complemental strand, 23966191 - 23966078
Alignment:
Q  62 gagtgaatacccaaattcgttcctgaattttcacgaatcgaacaaaaacgtcccccaattcatcgaaatgcacgctttgtccctgaatttaacaaacgtc 161  Q
    |||| |||||||||||||||||||| ||||||||| |||  | ||||||||||||||||| |||||||||||| |||||||| ||||||||||||| |||    
T  23966191 gagtaaatacccaaattcgttcctggattttcacggatcagagaaaaacgtcccccaattaatcgaaatgcacactttgtccttgaatttaacaaatgtc 23966092  T
Q  162 catcaaaatagtcc 175  Q
     |||||||||||||    
T  23966091 aatcaaaatagtcc 23966078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 62 - 244
Target Start/End: Original strand, 17198928 - 17199098
Alignment:
Q  62 gagtgaatacccaaattcgttcctgaattttcacgaatcgaacaaaaacgtcccccaattcatcgaaatgcacgctttgtccctgaatttaacaaacgtc 161  Q
    |||||||||  ||| ||||| ||||||||| ||||||||||||||||||||||||||||| |||||||||||| ||||||  ||||| ||||||||||||    
T  17198928 gagtgaatattcaatttcgtccctgaatttgcacgaatcgaacaaaaacgtcccccaatttatcgaaatgcacactttgt-tctgaa-ttaacaaacgtc 17199025  T
Q  162 catcaaaatagtccttccgtacaaatgctccgttagtgttgctgagttgtcgtcatgcatgtcatgttgtcttgtacacgtgt 244  Q
              |||||||  | ||||| ||||||||||| |||||| |||||||  ||||||||||||||||||||||||||||    
T  17199026 ----------gtccttctatccaaatactccgttagtgctgctgatttgtcgttctgcatgtcatgttgtcttgtacacgtgt 17199098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 62 - 151
Target Start/End: Original strand, 25971680 - 25971769
Alignment:
Q  62 gagtgaatacccaaattcgttcctgaattttcacgaatcgaacaaaaacgtcccccaattcatcgaaatgcacgctttgtccctgaattt 151  Q
    ||||||||| |||||||||| ||||||||| ||||||||| |||||||||||||  |||| ||| |||||||| |||||||| |||||||    
T  25971680 gagtgaatatccaaattcgtccctgaatttccacgaatcggacaaaaacgtcccataatttatcaaaatgcacactttgtccttgaattt 25971769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 62 - 151
Target Start/End: Original strand, 46866465 - 46866554
Alignment:
Q  62 gagtgaatacccaaattcgttcctgaattttcacgaatcgaacaaaaacgtcccccaattcatcgaaatgcacgctttgtccctgaattt 151  Q
    ||||||||| | |||||||| ||||||||| || |||||| ||||||| |||| |||||| |||||||||||| |||||||||| |||||    
T  46866465 gagtgaatatctaaattcgtccctgaatttgcaagaatcggacaaaaatgtcctccaatttatcgaaatgcacactttgtccctaaattt 46866554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 140 - 244
Target Start/End: Complemental strand, 37796227 - 37796123
Alignment:
Q  140 gtccctgaatttaacaaacgtccatcaaaatagtccttccgtacaaatgctccgttagtgttgctgagttgtcgtcatgcatgtcatgttgtcttgtaca 239  Q
    |||||||||||| ||  ||||||||||||||||||| ||||| || | |||||||||| | ||||||  |||| || |||||||  ||||||||| ||||    
T  37796227 gtccctgaattttacggacgtccatcaaaatagtccctccgtccataagctccgttagcgatgctgatgtgtcctcttgcatgttgtgttgtcttctaca 37796128  T
Q  240 cgtgt 244  Q
    |||||    
T  37796127 cgtgt 37796123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 140 - 243
Target Start/End: Complemental strand, 34776961 - 34776858
Alignment:
Q  140 gtccctgaatttaacaaacgtccatcaaaatagtccttccgtacaaatgctccgttagtgttgctgagttgtcgtcatgcatgtcatgttgtcttgtaca 239  Q
    |||||||||||| ||| |||||||||||||| |||| ||||| ||||  ||||||||||| || |||  |||| || |||||||  ||||||| ||||||    
T  34776961 gtccctgaattttacagacgtccatcaaaatggtccctccgtccaaaaactccgttagtgatgatgacgtgtcctcttgcatgttgtgttgtcatgtaca 34776862  T
Q  240 cgtg 243  Q
    ||||    
T  34776861 cgtg 34776858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 143 - 244
Target Start/End: Original strand, 13168204 - 13168305
Alignment:
Q  143 cctgaatttaacaaacgtccatcaaaatagtccttccgtacaaatgctccgttagtgttgctgagttgtcgtcatgcatgtcatgttgtcttgtacacgt 242  Q
    ||||||||| ||| |||||||||||||| |||| ||||| |||| |||||||||||| || |||  |||| || ||||||   ||||||| |||||||||    
T  13168204 cctgaattttacagacgtccatcaaaatggtccatccgtccaaaagctccgttagtggtgatgacgtgtcatcttgcatgctgtgttgtcatgtacacgt 13168303  T
Q  243 gt 244  Q
    ||    
T  13168304 gt 13168305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 140 - 244
Target Start/End: Original strand, 6602413 - 6602517
Alignment:
Q  140 gtccctgaatttaacaaacgtccatcaaaatagtccttccgtacaaatgctccgttagtgttgctgagttgtcgtcatgcatgtcatgttgtcttgtaca 239  Q
    |||||||||||| ||| |||||||||||||| |||| ||||| |||| |||||||||||| || |||  |||| |  ||||||   ||||||| ||||||    
T  6602413 gtccctgaattttacagacgtccatcaaaatggtccctccgtccaaaagctccgttagtggtgatgacatgtccttttgcatgctgtgttgtcatgtaca 6602512  T
Q  240 cgtgt 244  Q
    |||||    
T  6602513 cgtgt 6602517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 140 - 244
Target Start/End: Complemental strand, 35693416 - 35693312
Alignment:
Q  140 gtccctgaatttaacaaacgtccatcaaaatagtccttccgtacaaatgctccgttagtgttgctgagttgtcgtcatgcatgtcatgttgtcttgtaca 239  Q
    |||||||||||| ||| |||||||||||||| |||| ||| | |||| | || ||||||| || |||  |||| || |||||||  ||||||||||||||    
T  35693416 gtccctgaattttacagacgtccatcaaaatggtccctccatccaaaagttctgttagtggtgatgatgtgtcctcttgcatgtagtgttgtcttgtaca 35693317  T
Q  240 cgtgt 244  Q
    |||||    
T  35693316 cgtgt 35693312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 143 - 199
Target Start/End: Complemental strand, 37115569 - 37115513
Alignment:
Q  143 cctgaatttaacaaacgtccatcaaaatagtccttccgtacaaatgctccgttagtg 199  Q
    ||||||||| ||| ||||||||||||||||||| ||||| |||| ||||||||||||    
T  37115569 cctgaattttacagacgtccatcaaaatagtccctccgtccaaaagctccgttagtg 37115513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 65 - 151
Target Start/End: Complemental strand, 6058558 - 6058472
Alignment:
Q  65 tgaatacccaaattcgttcctgaattttcacgaatcgaacaaaaacgtcccccaattcatcgaaatgcacgctttgtccctgaattt 151  Q
    |||||| |||||||||| | ||||||| || |||| | |||||||||| | |||||| |||||||||||| |||| ||| |||||||    
T  6058558 tgaatatccaaattcgtccttgaatttgcatgaattggacaaaaacgttctccaatttatcgaaatgcacactttatccttgaattt 6058472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 140 - 244
Target Start/End: Complemental strand, 39859275 - 39859171
Alignment:
Q  140 gtccctgaatttaacaaacgtccatcaaaatagtccttccgtacaaatgctccgttagtgttgctgagttgtcgtcatgcatgtcatgttgtcttgtaca 239  Q
    |||| ||||||| ||| |||||| ||||||| |||| ||||| |||| |||||||||||| || |||  |||| || ||||||   ||||||| ||||||    
T  39859275 gtccttgaattttacagacgtccgtcaaaatggtccctccgtccaaaagctccgttagtggtgatgacgtgtcctcttgcatgctgtgttgtcatgtaca 39859176  T
Q  240 cgtgt 244  Q
    |||||    
T  39859175 cgtgt 39859171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 242 - 274
Target Start/End: Complemental strand, 46867860 - 46867828
Alignment:
Q  242 tgtacaaggaccaatttgatggaaacgctaaaa 274  Q
    |||||||||||||||||||||||||||||||||    
T  46867860 tgtacaaggaccaatttgatggaaacgctaaaa 46867828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 140 - 243
Target Start/End: Original strand, 23953883 - 23953986
Alignment:
Q  140 gtccctgaatttaacaaacgtccatcaaaatagtccttccgtacaaatgctccgttagtgttgctgagttgtcgtcatgcatgtcatgttgtcttgtaca 239  Q
    |||| |||||||  || ||||| |||||||  |||| ||||| ||| |||||||||||   ||||||  ||||| |||||||||  ||||||||||||||    
T  23953883 gtccgtgaatttgtcagacgtcaatcaaaaaggtccctccgtccaagtgctccgttagccatgctgatatgtcgccatgcatgttgtgttgtcttgtaca 23953982  T
Q  240 cgtg 243  Q
    ||||    
T  23953983 cgtg 23953986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 140 - 199
Target Start/End: Complemental strand, 30940471 - 30940412
Alignment:
Q  140 gtccctgaatttaacaaacgtccatcaaaatagtccttccgtacaaatgctccgttagtg 199  Q
    |||||||||||| |||||||| ||||||||| |||  ||||| |||| ||||||||||||    
T  30940471 gtccctgaattttacaaacgttcatcaaaatggtctctccgtccaaaagctccgttagtg 30940412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 103 - 170
Target Start/End: Original strand, 43009325 - 43009392
Alignment:
Q  103 acaaaaacgtcccccaattcatcgaaatgcacgctttgtccctgaatttaacaaacgtccatcaaaat 170  Q
    ||||||||||||| ||||| ||||||||      ||||||||||||||||||||| ||||||||||||    
T  43009325 acaaaaacgtccctcaatttatcgaaatagctattttgtccctgaatttaacaaatgtccatcaaaat 43009392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 244 - 274
Target Start/End: Original strand, 6056967 - 6056997
Alignment:
Q  244 tacaaggaccaatttgatggaaacgctaaaa 274  Q
    |||||||||||||||||||||||||||||||    
T  6056967 tacaaggaccaatttgatggaaacgctaaaa 6056997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 140 - 242
Target Start/End: Original strand, 45359414 - 45359516
Alignment:
Q  140 gtccctgaatttaacaaacgtccatcaaaatagtccttccgtacaaatgctccgttagtgttgctgagttgtcgtcatgcatgtcatgttgtcttgtaca 239  Q
    |||| ||||||| ||| |||||||||||||| |||| ||| | |||| |||||||||||| || |||  |||| || ||||||   ||||||| ||||||    
T  45359414 gtccttgaattttacagacgtccatcaaaatggtccctccatccaaaagctccgttagtggtgatgacgtgtcctcttgcatgctgtgttgtcatgtaca 45359513  T
Q  240 cgt 242  Q
    |||    
T  45359514 cgt 45359516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 238 - 268
Target Start/End: Original strand, 48704375 - 48704405
Alignment:
Q  238 cacgtgtacaaggaccaatttgatggaaacg 268  Q
    |||||||||||||||||||||||||||||||    
T  48704375 cacgtgtacaaggaccaatttgatggaaacg 48704405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 238 - 274
Target Start/End: Original strand, 13034868 - 13034904
Alignment:
Q  238 cacgtgtacaaggaccaatttgatggaaacgctaaaa 274  Q
    ||||||||||||||||||||| ||||||||| |||||    
T  13034868 cacgtgtacaaggaccaatttcatggaaacgttaaaa 13034904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 242 - 274
Target Start/End: Original strand, 17199115 - 17199147
Alignment:
Q  242 tgtacaaggaccaatttgatggaaacgctaaaa 274  Q
    |||||||||||||||||||||||||| ||||||    
T  17199115 tgtacaaggaccaatttgatggaaacactaaaa 17199147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 144 - 244
Target Start/End: Complemental strand, 24228451 - 24228351
Alignment:
Q  144 ctgaatttaacaaacgtccatcaaaatagtccttccgtacaaatgctccgttagtgttgctgagttgtcgtcatgcatgtcatgttgtcttgtacacgtg 243  Q
    |||||||| ||| |||||||||||||| |||| | ||| |||| ||||| |||||| || |||  |||| || |||||||  ||||||| | ||||||||    
T  24228451 ctgaattttacagacgtccatcaaaatggtcccttcgtccaaaagctccattagtggtgatgatgtgtcctcttgcatgttgtgttgtcatatacacgtg 24228352  T
Q  244 t 244  Q
    |    
T  24228351 t 24228351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 144 - 240
Target Start/End: Original strand, 27955452 - 27955548
Alignment:
Q  144 ctgaatttaacaaacgtccatcaaaatagtccttccgtacaaatgctccgttagtgttgctgagttgtcgtcatgcatgtcatgttgtcttgtacac 240  Q
    ||||||||  || ||||||||||||   |||| ||||| ||| ||||||||||||  ||||||  ||||||  |||||||  |||||||||||||||    
T  27955452 ctgaatttgtcagacgtccatcaaagaggtccctccgtccaagtgctccgttagtcatgctgatgtgtcgtgctgcatgttgtgttgtcttgtacac 27955548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 140 - 244
Target Start/End: Complemental strand, 33038843 - 33038739
Alignment:
Q  140 gtccctgaatttaacaaacgtccatcaaaatagtccttccgtacaaatgctccgttagtgttgctgagttgtcgtcatgcatgtcatgttgtcttgtaca 239  Q
    ||||||||||||  || |||||||||||||  |||| ||||| ||| ||||| |||||   || |||  ||||||| |||||||  ||||||||| ||||    
T  33038843 gtccctgaatttttcagacgtccatcaaaaaggtccctccgtccaagtgctctgttaggcatgttgatctgtcgtcctgcatgttgtgttgtcttataca 33038744  T
Q  240 cgtgt 244  Q
    |||||    
T  33038743 cgtgt 33038739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 147 - 199
Target Start/End: Complemental strand, 47386248 - 47386196
Alignment:
Q  147 aatttaacaaacgtccatcaaaatagtccttccgtacaaatgctccgttagtg 199  Q
    ||||| ||| |||||||||||||| ||| |||||| |||| ||||||||||||    
T  47386248 aattttacagacgtccatcaaaatggtcattccgtccaaaagctccgttagtg 47386196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 126; Significance: 6e-65; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 63 - 244
Target Start/End: Original strand, 43868615 - 43868796
Alignment:
Q  63 agtgaatacccaaattcgttcctgaattttcacgaatcgaacaaaaacgtcccccaattcatcgaaatgcacgctttgtccctgaatttaacaaacgtcc 162  Q
    |||||||||||||||| || ||||||||| ||||||||| | |||||||||| | |||| |||||||||||| |||| ||| |||||||||||||| |||    
T  43868615 agtgaatacccaaattagtccctgaatttgcacgaatcggataaaaacgtcctctaatttatcgaaatgcacactttatccttgaatttaacaaacatcc 43868714  T
Q  163 atcaaaatagtccttccgtacaaatgctccgttagtgttgctgagttgtcgtcatgcatgtcatgttgtcttgtacacgtgt 244  Q
    ||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  43868715 atcaaaatagtccttccgtccaaatgctccgttagtgctgctgagttgtcgtcatgcatgtcatgttgtcttgtacacgtgt 43868796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 62 - 269
Target Start/End: Original strand, 51544135 - 51544342
Alignment:
Q  62 gagtgaatacccaaattcgttcctgaattttcacgaatcgaacaaaaacgtcccccaattcatcgaaatgcacgctttgtccctgaatttaacaaacgtc 161  Q
    ||||| ||| |||||||||| | || |||| |||||||||  ||||||||||||||||||  ||||||||||||||| |||||||||||||||||| |||    
T  51544135 gagtgtatatccaaattcgtgcatggatttgcacgaatcggtcaaaaacgtcccccaattagtcgaaatgcacgcttagtccctgaatttaacaaatgtc 51544234  T
Q  162 catcaaaatagtccttccgtacaaatgctccgttagtgttgctgagttgtcgtcatgcatgtcatgttgtcttgtacacgtgtacaaggaccaatttgat 261  Q
     |||||| | ||| |||||| |||||| |||||||||| |||||||||||| || | |||| | ||||||||||||||||||||||||||| ||||||||    
T  51544235 aatcaaattggtcattccgtccaaatggtccgttagtggtgctgagttgtcttcctacatggcttgttgtcttgtacacgtgtacaaggacgaatttgat 51544334  T
Q  262 ggaaacgc 269  Q
     |||||||    
T  51544335 tgaaacgc 51544342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 62 - 175
Target Start/End: Complemental strand, 51546415 - 51546303
Alignment:
Q  62 gagtgaatacccaaattcgttcctgaattttcacgaatcgaacaaaaacgtcccccaattcatcgaaatgcacgctttgtccctgaatttaacaaacgtc 161  Q
    |||||||||||||||||||| |||| |||| |||||||||  ||||||||||||||||||  ||||||||||||||| ||| ||||||||||||||||||    
T  51546415 gagtgaatacccaaattcgtccctggatttgcacgaatcgg-caaaaacgtcccccaattagtcgaaatgcacgcttagtctctgaatttaacaaacgtc 51546317  T
Q  162 catcaaaatagtcc 175  Q
     |||||| ||||||    
T  51546316 aatcaaattagtcc 51546303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 62 - 151
Target Start/End: Complemental strand, 43870405 - 43870316
Alignment:
Q  62 gagtgaatacccaaattcgttcctgaattttcacgaatcgaacaaaaacgtcccccaattcatcgaaatgcacgctttgtccctgaattt 151  Q
    ||||||||||||||||||||   ||||||| ||||||||| | ||||||||||  ||||| |||||||||||| |||| |||||||||||    
T  43870405 gagtgaatacccaaattcgtcattgaatttgcacgaatcggataaaaacgtccttcaatttatcgaaatgcacactttatccctgaattt 43870316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 140 - 244
Target Start/End: Complemental strand, 6818724 - 6818620
Alignment:
Q  140 gtccctgaatttaacaaacgtccatcaaaatagtccttccgtacaaatgctccgttagtgttgctgagttgtcgtcatgcatgtcatgttgtcttgtaca 239  Q
    |||||||||||| ||| |||||||||||||| |||| ||||| |||| |||||||||||| || |||  |||| || |||||||  ||||||| ||||||    
T  6818724 gtccctgaattttacagacgtccatcaaaatggtccctccgtccaaaagctccgttagtggtgatgacatgtcctcttgcatgttgtgttgtcatgtaca 6818625  T
Q  240 cgtgt 244  Q
    |||||    
T  6818624 cgtgt 6818620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 140 - 244
Target Start/End: Original strand, 15104519 - 15104623
Alignment:
Q  140 gtccctgaatttaacaaacgtccatcaaaatagtccttccgtacaaatgctccgttagtgttgctgagttgtcgtcatgcatgtcatgttgtcttgtaca 239  Q
    |||||||||||| ||| |||||||||||||| |||||||||| |||| ||||| |||||| || |||  |||| || ||||||   ||||||||||||||    
T  15104519 gtccctgaattttacagacgtccatcaaaatggtccttccgtccaaaagctccattagtggtgatgatgtgtcttcttgcatgctgtgttgtcttgtaca 15104618  T
Q  240 cgtgt 244  Q
    |||||    
T  15104619 cgtgt 15104623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 140 - 244
Target Start/End: Complemental strand, 4856012 - 4855909
Alignment:
Q  140 gtccctgaatttaacaaacgtccatcaaaatagtccttccgtacaaatgctccgttagtgttgctgagttgtcgtcatgcatgtcatgttgtcttgtaca 239  Q
    |||||||||||| ||| |||||||||||||| |||| ||||| |||| ||||||||| || || |||  ||||  | |||||||  ||||||||||||||    
T  4856012 gtccctgaattttacagacgtccatcaaaatggtccctccgtccaaaagctccgttaatggtgatgacgtgtc-ccttgcatgttgtgttgtcttgtaca 4855914  T
Q  240 cgtgt 244  Q
    |||||    
T  4855913 cgtgt 4855909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 140 - 244
Target Start/End: Original strand, 27087361 - 27087464
Alignment:
Q  140 gtccctgaatttaacaaacgtccatcaaaatagtccttccgtacaaatgctccgttagtgttgctgagttgtcgtcatgcatgtcatgttgtcttgtaca 239  Q
    |||||||||||| |||||||||||||||||| | || ||||| |||| |||||||||||| || |||  ||||  | ||||||   ||||||||||||||    
T  27087361 gtccctgaattttacaaacgtccatcaaaatggcccatccgtccaaaagctccgttagtggtgatgatgtgtc-ccttgcatgctgtgttgtcttgtaca 27087459  T
Q  240 cgtgt 244  Q
    |||||    
T  27087460 cgtgt 27087464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 238 - 274
Target Start/End: Original strand, 43868809 - 43868845
Alignment:
Q  238 cacgtgtacaaggaccaatttgatggaaacgctaaaa 274  Q
    |||||||||||||||||||||||||||||||||||||    
T  43868809 cacgtgtacaaggaccaatttgatggaaacgctaaaa 43868845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 145 - 244
Target Start/End: Original strand, 37344425 - 37344524
Alignment:
Q  145 tgaatttaacaaacgtccatcaaaatagtccttccgtacaaatgctccgttagtgttgctgagttgtcgtcatgcatgtcatgttgtcttgtacacgtgt 244  Q
    ||||||| ||| |||||||||||||| |||| ||||| |||| |||||||||||| || |||  |||| || ||||||   ||||||| |||||||||||    
T  37344425 tgaattttacatacgtccatcaaaatggtccctccgtccaaaagctccgttagtggtgatgacgtgtcctcttgcatgatgtgttgtcatgtacacgtgt 37344524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 157 - 243
Target Start/End: Original strand, 31801728 - 31801814
Alignment:
Q  157 acgtccatcaaaatagtccttccgtacaaatgctccgttagtgttgctgagttgtcgtcatgcatgtcatgttgtcttgtacacgtg 243  Q
    |||||||||||||  |||| ||||| ||| |||||||||||   |||||| |||||||| |||||||  ||||||||||||| ||||    
T  31801728 acgtccatcaaaaaggtccctccgtccaagtgctccgttagccatgctgatttgtcgtcttgcatgttgtgttgtcttgtacgcgtg 31801814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 140 - 244
Target Start/End: Complemental strand, 25278414 - 25278310
Alignment:
Q  140 gtccctgaatttaacaaacgtccatcaaaatagtccttccgtacaaatgctccgttagtgttgctgagttgtcgtcatgcatgtcatgttgtcttgtaca 239  Q
    |||| ||||||| ||| |||||||||||||| |||| ||||| |||| |||||||||||| || |||  |||| || ||||||   || |||| ||||||    
T  25278414 gtccttgaattttacatacgtccatcaaaatggtccctccgtccaaaagctccgttagtggtgatgacgtgtcctcttgcatgatgtgctgtcatgtaca 25278315  T
Q  240 cgtgt 244  Q
    |||||    
T  25278314 cgtgt 25278310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 140 - 244
Target Start/End: Complemental strand, 31238541 - 31238437
Alignment:
Q  140 gtccctgaatttaacaaacgtccatcaaaatagtccttccgtacaaatgctccgttagtgttgctgagttgtcgtcatgcatgtcatgttgtcttgtaca 239  Q
    |||||||||||| ||| |||||||||||||| |||| || || |||| |||||||||||| || |||  |||| || | ||||   ||||||| ||||||    
T  31238541 gtccctgaattttacagacgtccatcaaaatggtccatctgtccaaaagctccgttagtggtgatgacgtgtcctcttccatgctgtgttgtcatgtaca 31238442  T
Q  240 cgtgt 244  Q
    |||||    
T  31238441 cgtgt 31238437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 140 - 244
Target Start/End: Complemental strand, 33602690 - 33602586
Alignment:
Q  140 gtccctgaatttaacaaacgtccatcaaaatagtccttccgtacaaatgctccgttagtgttgctgagttgtcgtcatgcatgtcatgttgtcttgtaca 239  Q
    |||||||||||| ||| |||||| ||||| |||||| ||||| |||| | |||||||||  || |||  || | || |||||||  ||||||||||||||    
T  33602690 gtccctgaattttacagacgtccgtcaaattagtccctccgtccaaaaggtccgttagtaatgatgatgtggcttcttgcatgttgtgttgtcttgtaca 33602591  T
Q  240 cgtgt 244  Q
    |||||    
T  33602590 cgtgt 33602586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 140 - 244
Target Start/End: Complemental strand, 34778184 - 34778081
Alignment:
Q  140 gtccctgaatttaacaaacgtccatcaaaatagtccttccgtacaaatgctccgttagtgttgctgagttgtcgtcatgcatgtcatgttgtcttgtaca 239  Q
    |||||||||||| ||| | |||||||||||| |||| ||||| |||| |||||||||||| || |||  ||||  | ||||| |  ||||||||||||||    
T  34778184 gtccctgaattttacagatgtccatcaaaatggtccctccgtccaaaagctccgttagtggtgatgacgtgtc-ccttgcatattgtgttgtcttgtaca 34778086  T
Q  240 cgtgt 244  Q
    |||||    
T  34778085 cgtgt 34778081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 140 - 243
Target Start/End: Complemental strand, 36895556 - 36895453
Alignment:
Q  140 gtccctgaatttaacaaacgtccatcaaaatagtccttccgtacaaatgctccgttagtgttgctgagttgtcgtcatgcatgtcatgttgtcttgtaca 239  Q
    ||||||||||||  || |||||||||||||  |||| | ||| ||| |||||||||||   ||||||  ||||||| |||||||  |||||||||||||     
T  36895556 gtccctgaatttgtcagacgtccatcaaaaaggtcccttcgtccaagtgctccgttagccatgctgatctgtcgtcttgcatgttgtgttgtcttgtacg 36895457  T
Q  240 cgtg 243  Q
    ||||    
T  36895456 cgtg 36895453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 140 - 199
Target Start/End: Complemental strand, 51896198 - 51896139
Alignment:
Q  140 gtccctgaatttaacaaacgtccatcaaaatagtccttccgtacaaatgctccgttagtg 199  Q
    |||||||||||| ||| | ||||||||||||||||| ||||| |||| |||| |||||||    
T  51896198 gtccctgaattttacagatgtccatcaaaatagtccctccgtccaaaagctctgttagtg 51896139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 162 - 244
Target Start/End: Complemental strand, 3013494 - 3013412
Alignment:
Q  162 catcaaaatagtccttccgtacaaatgctccgttagtgttgctgagttgtcgtcatgcatgtcatgttgtcttgtacacgtgt 244  Q
    |||||||||||||| ||||| |||| |||||||||||| || |||  | || || |||||| | ||||||| |||||||||||    
T  3013494 catcaaaatagtccctccgtccaaaagctccgttagtggtgatgatgtatcctcttgcatgccgtgttgtcatgtacacgtgt 3013412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 147 - 244
Target Start/End: Original strand, 2869664 - 2869761
Alignment:
Q  147 aatttaacaaacgtccatcaaaatagtccttccgtacaaatgctccgttagtgttgctgagttgtcgtcatgcatgtcatgttgtcttgtacacgtgt 244  Q
    ||||| ||| |||||||||||||| |||| ||||| |||| |||| ||||||| || |||  |||| || ||||||   ||||||| |||||||||||    
T  2869664 aattttacagacgtccatcaaaatggtccctccgtccaaaagctctgttagtggtgatgatgtgtcatcttgcatgatgtgttgtcctgtacacgtgt 2869761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 140 - 244
Target Start/End: Complemental strand, 50556143 - 50556039
Alignment:
Q  140 gtccctgaatttaacaaacgtccatcaaaatagtccttccgtacaaatgctccgttagtgttgctgagttgtcgtcatgcatgtcatgttgtcttgtaca 239  Q
    |||||| ||||| ||| ||||| |||||||| |||| ||||| |||| |||||||||||| || ||   |||| || ||||||   ||||||| ||||||    
T  50556143 gtccctaaattttacagacgtctatcaaaatggtccctccgtccaaaagctccgttagtggtgatggcgtgtcatcttgcatgctgtgttgtcatgtaca 50556044  T
Q  240 cgtgt 244  Q
    |||||    
T  50556043 cgtgt 50556039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 125; Significance: 2e-64; HSPs: 27)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 60 - 244
Target Start/End: Original strand, 5125799 - 5125983
Alignment:
Q  60 acgagtgaatacccaaattcgttcctgaattttcacgaatcgaacaaaaacgtcccccaattcatcgaaatgcacgctttgtccctgaatttaacaaacg 159  Q
    ||||||||||||||||||| || | ||||||| ||||||||| |||||||||||| |||||| |||||||||||| |||| ||| |||||||||||||||    
T  5125799 acgagtgaatacccaaattagtccttgaatttgcacgaatcggacaaaaacgtcctccaatttatcgaaatgcacactttatccttgaatttaacaaacg 5125898  T
Q  160 tccatcaaaatagtccttccgtacaaatgctccgttagtgttgctgagttgtcgtcatgcatgtcatgttgtcttgtacacgtgt 244  Q
    ||||||||||||||||||| || ||||||||||||||||| ||||||||||||||| |||||||| |||||||||||||||||||    
T  5125899 tccatcaaaatagtccttcggtccaaatgctccgttagtgctgctgagttgtcgtcctgcatgtcctgttgtcttgtacacgtgt 5125983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 62 - 244
Target Start/End: Original strand, 54092686 - 54092868
Alignment:
Q  62 gagtgaatacccaaattcgttcctgaattttcacgaatcgaacaaaaacgtcccccaattcatcgaaatgcacgctttgtccctgaatttaacaaacgtc 161  Q
    |||||||||||||||||||| ||||||||||||||||||| |||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||    
T  54092686 gagtgaatacccaaattcgtccctgaattttcacgaatcggacaaaaacattccccaattcatcgaaatgcacgctttgtccctgaatttaacaaacgtc 54092785  T
Q  162 catcaaaatagtccttccgtacaaatgctccgttagtgttgctgagttgtcgtcatgcatgtcatgttgtcttgtacacgtgt 244  Q
    |||||||||||||||||||| ||||||||| ||||| | ||| ||| | || ||  ||||||| |||||||||||||||||||    
T  54092786 catcaaaatagtccttccgtccaaatgctctgttagagctgccgagctctcatccagcatgtcctgttgtcttgtacacgtgt 54092868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 62 - 244
Target Start/End: Original strand, 5132996 - 5133178
Alignment:
Q  62 gagtgaatacccaaattcgttcctgaattttcacgaatcgaacaaaaacgtcccccaattcatcgaaatgcacgctttgtccctgaatttaacaaacgtc 161  Q
    |||| |||| ||||||| || | ||||||| ||||||||| |||||||||||| |||||| |||||||||||   ||||||| |||||||||||||||||    
T  5132996 gagtaaatatccaaattagtccttgaatttgcacgaatcggacaaaaacgtcctccaatttatcgaaatgcatattttgtccttgaatttaacaaacgtc 5133095  T
Q  162 catcaaaatagtccttccgtacaaatgctccgttagtgttgctgagttgtcgtcatgcatgtcatgttgtcttgtacacgtgt 244  Q
    |||||||||||||||||||| ||||||||||||||||| ||||||| |||||||||||||||| |||||||||||||||||||    
T  5133096 catcaaaatagtccttccgtccaaatgctccgttagtgctgctgagctgtcgtcatgcatgtcctgttgtcttgtacacgtgt 5133178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 62 - 244
Target Start/End: Original strand, 41623652 - 41623834
Alignment:
Q  62 gagtgaatacccaaattcgttcctgaattttcacgaatcgaacaaaaacgtcccccaattcatcgaaatgcacgctttgtccctgaatttaacaaacgtc 161  Q
    ||||||||| || ||||||| ||||||||| ||||||||| ||||||| || |||||||| |||||||||||| |||| ||  |||||||||||||||||    
T  41623652 gagtgaatatcccaattcgtccctgaatttgcacgaatcggacaaaaatgttccccaatttatcgaaatgcacactttatctttgaatttaacaaacgtc 41623751  T
Q  162 catcaaaatagtccttccgtacaaatgctccgttagtgttgctgagttgtcgtcatgcatgtcatgttgtcttgtacacgtgt 244  Q
    |||||||||||||||||||| ||||||||||||||||| | ||||| ||||||  |||||||| |||||||||||| ||||||    
T  41623752 catcaaaatagtccttccgttcaaatgctccgttagtgctactgagctgtcgttctgcatgtcttgttgtcttgtatacgtgt 41623834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 62 - 151
Target Start/End: Complemental strand, 41625442 - 41625353
Alignment:
Q  62 gagtgaatacccaaattcgttcctgaattttcacgaatcgaacaaaaacgtcccccaattcatcgaaatgcacgctttgtccctgaattt 151  Q
    ||||||||| |||||||||| ||||||||| ||||||||| ||||||| ||||||||||| ||||||| |||| ||||||||||||||||    
T  41625442 gagtgaatatccaaattcgtccctgaatttgcacgaatcggacaaaaatgtcccccaatttatcgaaacgcacactttgtccctgaattt 41625353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 62 - 151
Target Start/End: Complemental strand, 5127538 - 5127449
Alignment:
Q  62 gagtgaatacccaaattcgttcctgaattttcacgaatcgaacaaaaacgtcccccaattcatcgaaatgcacgctttgtccctgaattt 151  Q
    |||||||||||||||||||| | ||||||| ||| ||||| |||||||||||| |||||| |||||||||||| |||| |||||||||||    
T  5127538 gagtgaatacccaaattcgtccttgaatttgcacaaatcggacaaaaacgtcctccaatttatcgaaatgcacactttatccctgaattt 5127449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 62 - 151
Target Start/End: Complemental strand, 5134793 - 5134704
Alignment:
Q  62 gagtgaatacccaaattcgttcctgaattttcacgaatcgaacaaaaacgtcccccaattcatcgaaatgcacgctttgtccctgaattt 151  Q
    ||||||||||| |||||||| | ||||||| ||||||||| |||||||| ||| |||||| |||||||||||| |||| |||||||||||    
T  5134793 gagtgaataccaaaattcgtccttgaatttgcacgaatcggacaaaaacatcctccaatttatcgaaatgcacactttatccctgaattt 5134704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 140 - 244
Target Start/End: Complemental strand, 23293236 - 23293132
Alignment:
Q  140 gtccctgaatttaacaaacgtccatcaaaatagtccttccgtacaaatgctccgttagtgttgctgagttgtcgtcatgcatgtcatgttgtcttgtaca 239  Q
    |||| ||||||| ||||||||||||||||||||||| ||||| |||| |||||||||||| || |||  |||| || |||||||  ||||||| ||||||    
T  23293236 gtccatgaattttacaaacgtccatcaaaatagtccctccgtccaaaagctccgttagtggtgatgatgtgtcctcttgcatgttgtgttgtcatgtaca 23293137  T
Q  240 cgtgt 244  Q
    |||||    
T  23293136 cgtgt 23293132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 140 - 244
Target Start/End: Complemental strand, 27899147 - 27899043
Alignment:
Q  140 gtccctgaatttaacaaacgtccatcaaaatagtccttccgtacaaatgctccgttagtgttgctgagttgtcgtcatgcatgtcatgttgtcttgtaca 239  Q
    |||||||||||| ||| |||||||| ||||| |||| ||||| |||| |||||||||||| || |||  |||| || |||||||  ||||||| ||||||    
T  27899147 gtccctgaattttacagacgtccataaaaatggtccctccgtccaaaagctccgttagtggtgatgacgtgtcctcttgcatgttgtgttgtcatgtaca 27899048  T
Q  240 cgtgt 244  Q
    |||||    
T  27899047 cgtgt 27899043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 140 - 244
Target Start/End: Complemental strand, 53190825 - 53190722
Alignment:
Q  140 gtccctgaatttaacaaacgtccatcaaaatagtccttccgtacaaatgctccgttagtgttgctgagttgtcgtcatgcatgtcatgttgtcttgtaca 239  Q
    |||||||||||| ||| |||||||||||||| |||| ||||| |||| |||||||||||| || |||  ||||  | |||||||  ||||||||||||||    
T  53190825 gtccctgaattttacagacgtccatcaaaatggtccctccgtccaaaagctccgttagtggtgatgacgtgtc-ccttgcatgttgtgttgtcttgtaca 53190727  T
Q  240 cgtgt 244  Q
    |||||    
T  53190726 cgtgt 53190722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 62 - 151
Target Start/End: Complemental strand, 54094254 - 54094165
Alignment:
Q  62 gagtgaatacccaaattcgttcctgaattttcacgaatcgaacaaaaacgtcccccaattcatcgaaatgcacgctttgtccctgaattt 151  Q
    |||||||||| ||||||| | | ||||||| ||| ||||  |||||||| ||   ||||| |||||||||||||||||||||||||||||    
T  54094254 gagtgaatactcaaattcatccttgaatttgcacaaatcagacaaaaacatctttcaatttatcgaaatgcacgctttgtccctgaattt 54094165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 238 - 274
Target Start/End: Original strand, 5125996 - 5126032
Alignment:
Q  238 cacgtgtacaaggaccaatttgatggaaacgctaaaa 274  Q
    |||||||||||||||||||||||||||||||||||||    
T  5125996 cacgtgtacaaggaccaatttgatggaaacgctaaaa 5126032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 140 - 244
Target Start/End: Complemental strand, 7884939 - 7884836
Alignment:
Q  140 gtccctgaatttaacaaacgtccatcaaaatagtccttccgtacaaatgctccgttagtgttgctgagttgtcgtcatgcatgtcatgttgtcttgtaca 239  Q
    |||||||||||| ||| |||||||||||||| |||| ||||| |||| | |||||||||| || |||  ||||  | |||||||  ||||||||||||||    
T  7884939 gtccctgaattttacagacgtccatcaaaatggtccctccgtccaaaagttccgttagtggtgatgacatgtc-ccttgcatgttgtgttgtcttgtaca 7884841  T
Q  240 cgtgt 244  Q
    |||||    
T  7884840 cgtgt 7884836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 140 - 244
Target Start/End: Original strand, 21348801 - 21348905
Alignment:
Q  140 gtccctgaatttaacaaacgtccatcaaaatagtccttccgtacaaatgctccgttagtgttgctgagttgtcgtcatgcatgtcatgttgtcttgtaca 239  Q
    |||||||||||| ||| |||||||||||||| |||| ||||| |||| |||| ||||||| || | |  |||| || |||||||  ||||||| ||||||    
T  21348801 gtccctgaattttacagacgtccatcaaaatggtccctccgtccaaaagctctgttagtggtgataatgtgtcctcttgcatgttgtgttgtcatgtaca 21348900  T
Q  240 cgtgt 244  Q
    |||||    
T  21348901 cgtgt 21348905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 140 - 244
Target Start/End: Original strand, 42279585 - 42279689
Alignment:
Q  140 gtccctgaatttaacaaacgtccatcaaaatagtccttccgtacaaatgctccgttagtgttgctgagttgtcgtcatgcatgtcatgttgtcttgtaca 239  Q
    |||||||||||| ||| ||||| |||||||| |||| ||||| |||| |||| ||||||| || |||  |||| || |||||||  ||||||||| ||||    
T  42279585 gtccctgaattttacagacgtctatcaaaatggtccctccgtccaaaagctctgttagtggtgatgatgtgtcctcttgcatgttgtgttgtcttataca 42279684  T
Q  240 cgtgt 244  Q
    |||||    
T  42279685 cgtgt 42279689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 140 - 244
Target Start/End: Original strand, 51684688 - 51684792
Alignment:
Q  140 gtccctgaatttaacaaacgtccatcaaaatagtccttccgtacaaatgctccgttagtgttgctgagttgtcgtcatgcatgtcatgttgtcttgtaca 239  Q
    |||| ||||||| ||| |||||||||||||| |||| ||||| |||| |||||||||||| || |||  |||| || ||| |||  ||||||| ||||||    
T  51684688 gtccttgaattttacagacgtccatcaaaatggtccctccgtccaaaagctccgttagtggtgatgatgtgtcctcttgcgtgttgtgttgtcctgtaca 51684787  T
Q  240 cgtgt 244  Q
    |||||    
T  51684788 cgtgt 51684792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 157 - 258
Target Start/End: Complemental strand, 40508940 - 40508839
Alignment:
Q  157 acgtccatcaaaatagtccttccgtacaaatgctccgttagtgttgctgagttgtcgtcatgcatgtcatgttgtcttgtacacgtgtacaaggaccaat 256  Q
    |||||||||||||  |||| ||||| ||| || |||||||||  ||||||  ||||| | |||||||  ||||||| ||||||||||| ||||||| |||    
T  40508940 acgtccatcaaaaatgtccctccgtccaagtgttccgttagtcgtgctgatctgtcgccctgcatgttgtgttgtcatgtacacgtgttcaaggactaat 40508841  T
Q  257 tt 258  Q
    ||    
T  40508840 tt 40508839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 140 - 240
Target Start/End: Original strand, 17515388 - 17515488
Alignment:
Q  140 gtccctgaatttaacaaacgtccatcaaaatagtccttccgtacaaatgctccgttagtgttgctgagttgtcgtcatgcatgtcatgttgtcttgtaca 239  Q
    |||||||||||| |||||||||||||||||| |||| || || ||||  | ||||||||| || |||  |||| |  |||||||  ||||||||||||||    
T  17515388 gtccctgaattttacaaacgtccatcaaaatggtccctctgtccaaaatcaccgttagtggtgatgatgtgtccttttgcatgttgtgttgtcttgtaca 17515487  T
Q  240 c 240  Q
    |    
T  17515488 c 17515488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 135 - 243
Target Start/End: Complemental strand, 23888823 - 23888715
Alignment:
Q  135 gctttgtccctgaatttaacaaacgtccatcaaaatagtccttccgtacaaatgctccgttagtgttgctgagttgtcgtcatgcatgtcatgttgtctt 234  Q
    |||| ||||||||||||  ||||||||||||||||  |||| ||||| ||||| |||||||||  |||||||  ||||| | |||||    |||||||||    
T  23888823 gcttagtccctgaatttgtcaaacgtccatcaaaaaggtccctccgtccaaatcctccgttagccttgctgatctgtcgccttgcatactgtgttgtctt 23888724  T
Q  235 gtacacgtg 243  Q
    |||| ||||    
T  23888723 gtacgcgtg 23888715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 238 - 274
Target Start/End: Original strand, 41623847 - 41623883
Alignment:
Q  238 cacgtgtacaaggaccaatttgatggaaacgctaaaa 274  Q
    |||||||||||||||||||||||||||||| ||||||    
T  41623847 cacgtgtacaaggaccaatttgatggaaacactaaaa 41623883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 144 - 244
Target Start/End: Original strand, 43765219 - 43765319
Alignment:
Q  144 ctgaatttaacaaacgtccatcaaaatagtccttccgtacaaatgctccgttagtgttgctgagttgtcgtcatgcatgtcatgttgtcttgtacacgtg 243  Q
    |||||||| ||| |||||||||||||| |||| ||| | |||| |||||||||||| || |||  |||| || | |||||  ||||||| ||||||||||    
T  43765219 ctgaattttacagacgtccatcaaaatggtccctccatccaaaagctccgttagtggtgatgatgtgtcctcttacatgttgtgttgtcatgtacacgtg 43765318  T
Q  244 t 244  Q
    |    
T  43765319 t 43765319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 140 - 244
Target Start/End: Original strand, 46112565 - 46112669
Alignment:
Q  140 gtccctgaatttaacaaacgtccatcaaaatagtccttccgtacaaatgctccgttagtgttgctgagttgtcgtcatgcatgtcatgttgtcttgtaca 239  Q
    |||| ||||||| ||| |||||||||||||| |||| ||||| |||| |||  ||||||| || |||  |||| || |||||||  ||||||| ||||||    
T  46112565 gtccatgaattttacagacgtccatcaaaatggtccctccgttcaaaagctatgttagtggtgatgacgtgtcctcttgcatgttgtgttgtcatgtaca 46112664  T
Q  240 cgtgt 244  Q
    |||||    
T  46112665 cgtgt 46112669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 157 - 244
Target Start/End: Complemental strand, 48830855 - 48830768
Alignment:
Q  157 acgtccatcaaaatagtccttccgtacaaatgctccgttagtgttgctgagttgtcgtcatgcatgtcatgttgtcttgtacacgtgt 244  Q
    |||||||||||||| |||| ||||| |||| |||| ||||||| || |||  |||| || |||||||  ||||||| |||||||||||    
T  48830855 acgtccatcaaaatggtccctccgtccaaaagctctgttagtggtgatgatgtgtcctcttgcatgttgtgttgtcatgtacacgtgt 48830768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 158 - 244
Target Start/End: Original strand, 600805 - 600891
Alignment:
Q  158 cgtccatcaaaatagtccttccgtacaaatgctccgttagtgttgctgagttgtcgtcatgcatgtcatgttgtcttgtacacgtgt 244  Q
    ||||||||||||| |||| |||||  ||| |||||||||||| || |||  |||| || |||||||  ||||||| |||||||||||    
T  600805 cgtccatcaaaatggtccctccgtctaaaagctccgttagtggtgatgacgtgtcctcttgcatgttgtgttgtcatgtacacgtgt 600891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 144 - 244
Target Start/End: Original strand, 2377111 - 2377211
Alignment:
Q  144 ctgaatttaacaaacgtccatcaaaatagtccttccgtacaaatgctccgttagtgttgctgagttgtcgtcatgcatgtcatgttgtcttgtacacgtg 243  Q
    |||||||| ||| |||||||||||||| || | |||||  ||| |||||||||||| || |||  |||| || ||||||   ||||||| ||||||||||    
T  2377111 ctgaattttacagacgtccatcaaaatggttcctccgtctaaaagctccgttagtggtgatgacgtgtcctcttgcatgatgtgttgtcatgtacacgtg 2377210  T
Q  244 t 244  Q
    |    
T  2377211 t 2377211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 140 - 240
Target Start/End: Complemental strand, 30599984 - 30599884
Alignment:
Q  140 gtccctgaatttaacaaacgtccatcaaaatagtccttccgtacaaatgctccgttagtgttgctgagttgtcgtcatgcatgtcatgttgtcttgtaca 239  Q
    |||||||||||| | | ||||| |||||||| |||| ||||| |||| |||| ||||||| || |||  |||| || ||||||   ||||||||||||||    
T  30599984 gtccctgaattttagagacgtcgatcaaaatggtccctccgtccaaaagctctgttagtggtgatgatgtgtcctcttgcatgctgtgttgtcttgtaca 30599885  T
Q  240 c 240  Q
    |    
T  30599884 c 30599884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 143 - 243
Target Start/End: Complemental strand, 45257263 - 45257163
Alignment:
Q  143 cctgaatttaacaaacgtccatcaaaatagtccttccgtacaaatgctccgttagtgttgctgagttgtcgtcatgcatgtcatgttgtcttgtacacgt 242  Q
    |||||||||  || |||||||| ||||  |||| ||||| ||| ||||||||||||  ||||||  || || | |||||||  |||||||||||||||||    
T  45257263 cctgaatttgtcagacgtccataaaaaatgtccctccgtccaagtgctccgttagtcatgctgacatgccgccctgcatgttgtgttgtcttgtacacgt 45257164  T
Q  243 g 243  Q
    |    
T  45257163 g 45257163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0129 (Bit Score: 123; Significance: 4e-63; HSPs: 2)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 62 - 244
Target Start/End: Original strand, 4459 - 4641
Alignment:
Q  62 gagtgaatacccaaattcgttcctgaattttcacgaatcgaacaaaaacgtcccccaattcatcgaaatgcacgctttgtccctgaatttaacaaacgtc 161  Q
    ||||||||| |||||||||| |||| ||||| |||||| | ||||||||||||||||||| || ||||||||||||||||||||||||| ||||||||||    
T  4459 gagtgaatatccaaattcgtccctggattttaacgaattggacaaaaacgtcccccaattaattgaaatgcacgctttgtccctgaattcaacaaacgtc 4558  T
Q  162 catcaaaatagtccttccgtacaaatgctccgttagtgttgctgagttgtcgtcatgcatgtcatgttgtcttgtacacgtgt 244  Q
    |||||||||||||||||||| |||||| || ||||||||||||||||||||||| |||||| | |||||||||||||||||||    
T  4559 catcaaaatagtccttccgtccaaatgttctgttagtgttgctgagttgtcgtcctgcatggcttgttgtcttgtacacgtgt 4641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0129; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 62 - 175
Target Start/End: Complemental strand, 6150 - 6037
Alignment:
Q  62 gagtgaatacccaaattcgttcctgaattttcacgaatcgaacaaaaacgtcccccaattcatcgaaatgcacgctttgtccctgaatttaacaaacgtc 161  Q
    ||||||||||| |||| ||| | ||||||||||||||||| |||||||||||||| |||| ||||||||||||| |||||||||||||||||||||||||    
T  6150 gagtgaatacctaaatccgtccttgaattttcacgaatcggacaaaaacgtcccctaattaatcgaaatgcacgttttgtccctgaatttaacaaacgtc 6051  T
Q  162 catcaaaatagtcc 175  Q
    ||||||| ||||||    
T  6050 catcaaattagtcc 6037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 120; Significance: 2e-61; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 62 - 269
Target Start/End: Original strand, 37801466 - 37801673
Alignment:
Q  62 gagtgaatacccaaattcgttcctgaattttcacgaatcgaacaaaaacgtcccccaattcatcgaaatgcacgctttgtccctgaatttaacaaacgtc 161  Q
    ||||||||| |||||||||| |||| |||| |||||||||  ||||||||||||||||||  ||||||||||||||| ||||||||||||||||||||||    
T  37801466 gagtgaatatccaaattcgtccctggatttgcacgaatcggccaaaaacgtcccccaattagtcgaaatgcacgcttagtccctgaatttaacaaacgtc 37801565  T
Q  162 catcaaaatagtccttccgtacaaatgctccgttagtgttgctgagttgtcgtcatgcatgtcatgttgtcttgtacacgtgtacaaggaccaatttgat 261  Q
     |||||| | |||||||||| |||||| | |||||||| |||||||||||| || |||||| | ||||||||||||||||||||||||||| ||||||||    
T  37801566 aatcaaattggtccttccgtccaaatggttcgttagtggtgctgagttgtcttcctgcatggcttgttgtcttgtacacgtgtacaaggacgaatttgat 37801665  T
Q  262 ggaaacgc 269  Q
     |||||||    
T  37801666 tgaaacgc 37801673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 62 - 244
Target Start/End: Complemental strand, 15145886 - 15145704
Alignment:
Q  62 gagtgaatacccaaattcgttcctgaattttcacgaatcgaacaaaaacgtcccccaattcatcgaaatgcacgctttgtccctgaatttaacaaacgtc 161  Q
    ||||||||| |||||||||||||| ||||||||  ||||| |||||||||||||| |||| |||||||||||| ||||||||||||||||||||||||||    
T  15145886 gagtgaatatccaaattcgttcctaaattttcataaatcggacaaaaacgtccccaaattaatcgaaatgcacactttgtccctgaatttaacaaacgtc 15145787  T
Q  162 catcaaaatagtccttccgtacaaatgctccgttagtgttgctgagttgtcgtcatgcatgtcatgttgtcttgtacacgtgt 244  Q
     ||||||||||||||||||| ||||||||| ||||||| || ||||||||| || | |||| | |||||||||||||||||||    
T  15145786 gatcaaaatagtccttccgtccaaatgctctgttagtgctgttgagttgtcttcctacatggcttgttgtcttgtacacgtgt 15145704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 62 - 274
Target Start/End: Original strand, 44526619 - 44526831
Alignment:
Q  62 gagtgaatacccaaattcgttcctgaattt-tcacgaatcgaacaaaaacgtcccccaattcatcgaaatgcacgctttgtccctgaatttaacaaacgt 160  Q
    ||||||||| |||||||||| ||| ||||  | ||||||||  ||||||  ||||||||||  ||||||||||||||| ||||||||||||||||||||     
T  44526619 gagtgaatatccaaattcgt-cctaaattgattacgaatcggccaaaaatatcccccaattagtcgaaatgcacgcttagtccctgaatttaacaaacgc 44526717  T
Q  161 ccatcaaaatagtccttccgtacaaatgctccgttagtgttgctgagttgtcgtcatgcatgtcatgttgtcttgtacacgtgtacaaggaccaatttga 260  Q
    | |||||| |||||||||||| ||||||||| ||||||| ||||||||||||||| |||||| | ||||||||||||||||||||||||||| |||||||    
T  44526718 caatcaaattagtccttccgttcaaatgctctgttagtggtgctgagttgtcgtcttgcatggcttgttgtcttgtacacgtgtacaaggacgaatttga 44526817  T
Q  261 tggaaacgctaaaa 274  Q
    |  |||||| ||||    
T  44526818 tttaaacgcaaaaa 44526831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 65 - 175
Target Start/End: Complemental strand, 44528261 - 44528151
Alignment:
Q  65 tgaatacccaaattcgttcctgaattttcacgaatcgaacaaaaacgtcccccaattcatcgaaatgcacgctttgtccctgaatttaacaaacgtccat 164  Q
    |||||||||||||||||| |||||||| |||||||||  |||||| |||||||||||  |||||||||||| || |||||||||||||||||||||| ||    
T  44528261 tgaatacccaaattcgtttctgaatttgcacgaatcggccaaaaatgtcccccaattagtcgaaatgcacgtttagtccctgaatttaacaaacgtcaat 44528162  T
Q  165 caaaatagtcc 175  Q
    |||| ||||||    
T  44528161 caaattagtcc 44528151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 65 - 174
Target Start/End: Original strand, 15142963 - 15143071
Alignment:
Q  65 tgaatacccaaattcgttcctgaattttcacgaatcgaacaaaaacgtcccccaattcatcgaaatgcacgctttgtccctgaatttaacaaacgtccat 164  Q
    |||||||| |||||||| | ||||||||||||||||| |||||||||||| | |||| |||||||||||| |||||||||||||||||||||||||  ||    
T  15142963 tgaatacctaaattcgtccttgaattttcacgaatcggacaaaaacgtcctc-aattaatcgaaatgcacactttgtccctgaatttaacaaacgttaat 15143061  T
Q  165 caaaatagtc 174  Q
    ||||||||||    
T  15143062 caaaatagtc 15143071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 62 - 175
Target Start/End: Complemental strand, 37803752 - 37803639
Alignment:
Q  62 gagtgaatacccaaattcgttcctgaattttcacgaatcgaacaaaaacgtcccccaattcatcgaaatgcacgctttgtccctgaatttaacaaacgtc 161  Q
    ||||||||||||||||||||||||| |||| |||||||||   ||||| |||| ||||||  ||||||||||||||| |||||| |||||||||||||||    
T  37803752 gagtgaatacccaaattcgttcctggatttgcacgaatcggctaaaaatgtcctccaattagtcgaaatgcacgcttagtccctaaatttaacaaacgtc 37803653  T
Q  162 catcaaaatagtcc 175  Q
     |||||| ||||||    
T  37803652 aatcaaattagtcc 37803639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 140 - 244
Target Start/End: Original strand, 22272414 - 22272518
Alignment:
Q  140 gtccctgaatttaacaaacgtccatcaaaatagtccttccgtacaaatgctccgttagtgttgctgagttgtcgtcatgcatgtcatgttgtcttgtaca 239  Q
    |||||||||||| ||||||||||||||||||||||| ||| | |||| |||||||||||| || |||  |||  || |||||||  ||||||| ||||||    
T  22272414 gtccctgaattttacaaacgtccatcaaaatagtccctccatccaaaagctccgttagtggtgatgatgtgttctcttgcatgttgtgttgtcatgtaca 22272513  T
Q  240 cgtgt 244  Q
     ||||    
T  22272514 tgtgt 22272518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 144 - 244
Target Start/End: Complemental strand, 26242376 - 26242276
Alignment:
Q  144 ctgaatttaacaaacgtccatcaaaatagtccttccgtacaaatgctccgttagtgttgctgagttgtcgtcatgcatgtcatgttgtcttgtacacgtg 243  Q
    |||||||| ||| |||||||||||||| |||| ||||| |||| ||||||||||||  | |||  |||| || |||||||  ||||||||||||||||||    
T  26242376 ctgaattttacagacgtccatcaaaatggtccctccgtccaaaagctccgttagtggcgatgatgtgtcctcttgcatgttgtgttgtcttgtacacgtg 26242277  T
Q  244 t 244  Q
    |    
T  26242276 t 26242276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 140 - 199
Target Start/End: Original strand, 13282556 - 13282615
Alignment:
Q  140 gtccctgaatttaacaaacgtccatcaaaatagtccttccgtacaaatgctccgttagtg 199  Q
    |||||||||||| |||||||||||||||||| |||| ||||| |||| ||||||||||||    
T  13282556 gtccctgaattttacaaacgtccatcaaaatggtccctccgtccaaaagctccgttagtg 13282615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 238 - 274
Target Start/End: Original strand, 6164698 - 6164734
Alignment:
Q  238 cacgtgtacaaggaccaatttgatggaaacgctaaaa 274  Q
    |||||||||||||||||||||||||||||||||||||    
T  6164698 cacgtgtacaaggaccaatttgatggaaacgctaaaa 6164734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 140 - 244
Target Start/End: Complemental strand, 8609853 - 8609750
Alignment:
Q  140 gtccctgaatttaacaaacgtccatcaaaatagtccttccgtacaaatgctccgttagtgttgctgagttgtcgtcatgcatgtcatgttgtcttgtaca 239  Q
    |||||||||||| ||| |||||||||||||| |||| ||||| |||| |||||||||||| || |||  ||||  | ||||||   ||||||||||||||    
T  8609853 gtccctgaattttacagacgtccatcaaaatggtccctccgtccaaaagctccgttagtggtgatgacgtgtc-ccttgcatgctgtgttgtcttgtaca 8609755  T
Q  240 cgtgt 244  Q
    |||||    
T  8609754 cgtgt 8609750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 141 - 244
Target Start/End: Complemental strand, 9673230 - 9673127
Alignment:
Q  141 tccctgaatttaacaaacgtccatcaaaatagtccttccgtacaaatgctccgttagtgttgctgagttgtcgtcatgcatgtcatgttgtcttgtacac 240  Q
    ||||||||||| ||| |||||||||||||| |||| |||||  ||| ||| |||||||| || |||  |||| || |||||||  ||||||| |||||||    
T  9673230 tccctgaattttacagacgtccatcaaaatggtccctccgtctaaaagcttcgttagtggtgatgatgtgtcttcttgcatgttgtgttgtcatgtacac 9673131  T
Q  241 gtgt 244  Q
    ||||    
T  9673130 gtgt 9673127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 145 - 244
Target Start/End: Complemental strand, 11722850 - 11722751
Alignment:
Q  145 tgaatttaacaaacgtccatcaaaatagtccttccgtacaaatgctccgttagtgttgctgagttgtcgtcatgcatgtcatgttgtcttgtacacgtgt 244  Q
    ||||||||||||||||| |||||| |  ||| ||||| || ||||||| ||| || ||||||  ||||||| |||||||  |||||| ||||||||||||    
T  11722850 tgaatttaacaaacgtcaatcaaattcatccctccgtccagatgctccattactgatgctgatatgtcgtcttgcatgttgtgttgtgttgtacacgtgt 11722751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 145 - 243
Target Start/End: Original strand, 8654582 - 8654680
Alignment:
Q  145 tgaatttaacaaacgtccatcaaaatagtccttccgtacaaatgctccgttagtgttgctgagttgtcgtcatgcatgtcatgttgtcttgtacacgtg 243  Q
    |||||||| || |||||||||||||  |||| ||||| ||| |||||||||||   ||||||  ||||| | ||||||  |||||||||||||||||||    
T  8654582 tgaatttatcagacgtccatcaaaagggtccctccgtccaagtgctccgttagccatgctgacatgtcgccctgcatgcaatgttgtcttgtacacgtg 8654680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 140 - 244
Target Start/End: Complemental strand, 7745178 - 7745074
Alignment:
Q  140 gtccctgaatttaacaaacgtccatcaaaatagtccttccgtacaaatgctccgttagtgttgctgagttgtcgtcatgcatgtcatgttgtcttgtaca 239  Q
    ||||||| |||| ||| || ||||||||||| |||| ||| | |||| |||||||||||| || |||  |||| || ||||||   ||||||||||||||    
T  7745178 gtccctgtattttacagacatccatcaaaatggtccctccatccaaaagctccgttagtggtgatgatgtgtcctcttgcatgatgtgttgtcttgtaca 7745079  T
Q  240 cgtgt 244  Q
    |||||    
T  7745078 cgtgt 7745074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 140 - 244
Target Start/End: Complemental strand, 13108402 - 13108299
Alignment:
Q  140 gtccctgaatttaacaaacgtccatcaaaatagtccttccgtacaaatgctccgttagtgttgctgagttgtcgtcatgcatgtcatgttgtcttgtaca 239  Q
    |||||||||||| ||| |||||||||||||| |||| ||||| |||| ||| |||||||| || |||  ||||  | ||||||   ||||||||||||||    
T  13108402 gtccctgaattttacagacgtccatcaaaatggtccctccgtccaaaagcttcgttagtggtgatgacgtgtc-ccttgcatgctgtgttgtcttgtaca 13108304  T
Q  240 cgtgt 244  Q
    |||||    
T  13108303 cgtgt 13108299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 140 - 244
Target Start/End: Original strand, 38547306 - 38547409
Alignment:
Q  140 gtccctgaatttaacaaacgtccatcaaaatagtccttccgtacaaatgctccgttagtgttgctgagttgtcgtcatgcatgtcatgttgtcttgtaca 239  Q
    |||||||||||| ||| |||||||||||||| |||| ||| | |||| |||||||||||| || |||  ||||  | ||||||   ||||||||||||||    
T  38547306 gtccctgaattttacagacgtccatcaaaatggtccctccatccaaaagctccgttagtggtgatgacgtgtc-ccttgcatgctgtgttgtcttgtaca 38547404  T
Q  240 cgtgt 244  Q
    |||||    
T  38547405 cgtgt 38547409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 140 - 244
Target Start/End: Original strand, 42941852 - 42941956
Alignment:
Q  140 gtccctgaatttaacaaacgtccatcaaaatagtccttccgtacaaatgctccgttagtgttgctgagttgtcgtcatgcatgtcatgttgtcttgtaca 239  Q
    |||||||||||| ||| | ||||||||||||||||| ||||| ||||  |||||||||||  | |||  |||| || |||||||  |||||||  |||||    
T  42941852 gtccctgaattttacagatgtccatcaaaatagtccctccgtccaaaatctccgttagtggagatgatgtgtcctcttgcatgttgtgttgtcaggtaca 42941951  T
Q  240 cgtgt 244  Q
    |||||    
T  42941952 cgtgt 42941956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 140 - 199
Target Start/End: Complemental strand, 41042650 - 41042591
Alignment:
Q  140 gtccctgaatttaacaaacgtccatcaaaatagtccttccgtacaaatgctccgttagtg 199  Q
    |||||||||||| |||  ||||||||||||| |||| ||||| |||| ||||||||||||    
T  41042650 gtccctgaattttacaggcgtccatcaaaatggtccctccgtccaaaagctccgttagtg 41042591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 140 - 244
Target Start/End: Original strand, 9184461 - 9184565
Alignment:
Q  140 gtccctgaatttaacaaacgtccatcaaaatagtccttccgtacaaatgctccgttagtgttgctgagttgtcgtcatgcatgtcatgttgtcttgtaca 239  Q
    ||||||||||||  || ||||| ||| |||| |||| ||||| |||||||| | |||||| ||||||  ||||| | ||||||   ||||||||||||||    
T  9184461 gtccctgaatttgtcagacgtcgatcgaaatggtccctccgtccaaatgcttcattagtgctgctgatctgtcgccctgcatgatgtgttgtcttgtaca 9184560  T
Q  240 cgtgt 244  Q
     ||||    
T  9184561 tgtgt 9184565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 241 - 269
Target Start/End: Original strand, 11788519 - 11788547
Alignment:
Q  241 gtgtacaaggaccaatttgatggaaacgc 269  Q
    |||||||||||||||||||||||||||||    
T  11788519 gtgtacaaggaccaatttgatggaaacgc 11788547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 140 - 244
Target Start/End: Complemental strand, 13486165 - 13486061
Alignment:
Q  140 gtccctgaatttaacaaacgtccatcaaaatagtccttccgtacaaatgctccgttagtgttgctgagttgtcgtcatgcatgtcatgttgtcttgtaca 239  Q
    |||||||||||| ||| |||||||||||||| |||| || || |||| ||||| |||||  || |||  |||| || |||||||  ||||| | ||||||    
T  13486165 gtccctgaattttacagacgtccatcaaaatggtccctctgtccaaaagctccattagtagtgatgatgtgtcctcttgcatgttgtgttgccctgtaca 13486066  T
Q  240 cgtgt 244  Q
    |||||    
T  13486065 cgtgt 13486061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 120; Significance: 2e-61; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 62 - 269
Target Start/End: Original strand, 11163800 - 11164007
Alignment:
Q  62 gagtgaatacccaaattcgttcctgaattttcacgaatcgaacaaaaacgtcccccaattcatcgaaatgcacgctttgtccctgaatttaacaaacgtc 161  Q
    |||||||||||||||||||| | || |||| |||||||||  ||||||| || |||||||  ||||||||||||||| ||||||||||||||||||||||    
T  11163800 gagtgaatacccaaattcgtccttggatttgcacgaatcggccaaaaacatctcccaattagtcgaaatgcacgcttagtccctgaatttaacaaacgtc 11163899  T
Q  162 catcaaaatagtccttccgtacaaatgctccgttagtgttgctgagttgtcgtcatgcatgtcatgttgtcttgtacacgtgtacaaggaccaatttgat 261  Q
     |||||| |||||||||||| ||||||| ||||||||| |||||||||||| || |||||| | ||||||||||||||||||||||||||| ||||||||    
T  11163900 aatcaaattagtccttccgtccaaatgcaccgttagtggtgctgagttgtcttcctgcatggcttgttgtcttgtacacgtgtacaaggacgaatttgat 11163999  T
Q  262 ggaaacgc 269  Q
     |||||||    
T  11164000 tgaaacgc 11164007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 65 - 244
Target Start/End: Complemental strand, 25172230 - 25172051
Alignment:
Q  65 tgaatacccaaattcgttcctgaattttcacgaatcgaacaaaaacgtcccccaattcatcgaaatgcacgctttgtccctgaatttaacaaacgtccat 164  Q
    ||||||||||||||||| ||||||||||||||||||| ||||| |  |  ||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  25172230 tgaatacccaaattcgtccctgaattttcacgaatcggacaaatatatttcccaattcatcgaaatgcacgctttatccctgaatttaacaaacgtccat 25172131  T
Q  165 caaaatagtccttccgtacaaatgctccgttagtgttgctgagttgtcgtcatgcatgtcatgttgtcttgtacacgtgt 244  Q
     |||||||||||||||| |||||||||| ||||| ||| |||||||| ||| ||||||||||||||||||||||||||||    
T  25172130 aaaaatagtccttccgtccaaatgctccattagtattgttgagttgttgtcctgcatgtcatgttgtcttgtacacgtgt 25172051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 62 - 151
Target Start/End: Original strand, 25170297 - 25170386
Alignment:
Q  62 gagtgaatacccaaattcgttcctgaattttcacgaatcgaacaaaaacgtcccccaattcatcgaaatgcacgctttgtccctgaattt 151  Q
    |||||||||||||||||||| ||||||||| |||||||||||||||||||||||  |||||||||||||| ||||||| ||| |||||||    
T  25170297 gagtgaatacccaaattcgtccctgaatttgcacgaatcgaacaaaaacgtcccttaattcatcgaaatgtacgctttatccttgaattt 25170386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 140 - 244
Target Start/End: Original strand, 7049835 - 7049939
Alignment:
Q  140 gtccctgaatttaacaaacgtccatcaaaatagtccttccgtacaaatgctccgttagtgttgctgagttgtcgtcatgcatgtcatgttgtcttgtaca 239  Q
    |||||||||||| ||| |||||||||||||| |||| ||||| |||| |||||||| ||| || |||  |||| || |||||||  ||||||| ||||||    
T  7049835 gtccctgaattttacagacgtccatcaaaatggtccctccgtccaaaagctccgttcgtggtgatgatgtgtcctcttgcatgttgtgttgtcatgtaca 7049934  T
Q  240 cgtgt 244  Q
    |||||    
T  7049935 cgtgt 7049939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 140 - 244
Target Start/End: Original strand, 10568477 - 10568581
Alignment:
Q  140 gtccctgaatttaacaaacgtccatcaaaatagtccttccgtacaaatgctccgttagtgttgctgagttgtcgtcatgcatgtcatgttgtcttgtaca 239  Q
    |||||||||||| ||| ||||| ||||||||||||| ||||| |||| |||||||||||| || |||  |||| |  |||||||  ||||||| ||||||    
T  10568477 gtccctgaattttacagacgtctatcaaaatagtccctccgtccaaaagctccgttagtggtgatgatgtgtccttttgcatgttgtgttgtcatgtaca 10568576  T
Q  240 cgtgt 244  Q
    |||||    
T  10568577 cgtgt 10568581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 140 - 244
Target Start/End: Original strand, 20523444 - 20523548
Alignment:
Q  140 gtccctgaatttaacaaacgtccatcaaaatagtccttccgtacaaatgctccgttagtgttgctgagttgtcgtcatgcatgtcatgttgtcttgtaca 239  Q
    |||||||||||| ||| |||||||||||||| |||| ||||| |||| | || ||||||| || |||  |||| || |||||| | ||||||| ||||||    
T  20523444 gtccctgaattttacagacgtccatcaaaatggtccctccgtccaaaagttctgttagtggtgatgatgtgtcttcttgcatgccgtgttgtcctgtaca 20523543  T
Q  240 cgtgt 244  Q
    |||||    
T  20523544 cgtgt 20523548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 140 - 244
Target Start/End: Original strand, 6899563 - 6899667
Alignment:
Q  140 gtccctgaatttaacaaacgtccatcaaaatagtccttccgtacaaatgctccgttagtgttgctgagttgtcgtcatgcatgtcatgttgtcttgtaca 239  Q
    |||||| ||||| ||| || ||||||||||| |||| | ||| |||| ||||||||||||||| |||  |||| || |||||||  |||| || ||||||    
T  6899563 gtccctaaattttacagacatccatcaaaatggtcccttcgtccaaaagctccgttagtgttgatgatgtgtcctcttgcatgttgtgttatcatgtaca 6899662  T
Q  240 cgtgt 244  Q
    |||||    
T  6899663 cgtgt 6899667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 141 - 244
Target Start/End: Original strand, 11355301 - 11355404
Alignment:
Q  141 tccctgaatttaacaaacgtccatcaaaatagtccttccgtacaaatgctccgttagtgttgctgagttgtcgtcatgcatgtcatgttgtcttgtacac 240  Q
    ||||||||||| ||| ||| ||| |||||| |||| ||||| |||| |||||| ||||| || |||  |||| || |||||||  ||||||| |||||||    
T  11355301 tccctgaattttacagacggccaccaaaatggtccctccgtccaaaagctccggtagtggtgatgacgtgtcctcttgcatgttgtgttgtcatgtacac 11355400  T
Q  241 gtgt 244  Q
    ||||    
T  11355401 gtgt 11355404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 141 - 196
Target Start/End: Complemental strand, 14338520 - 14338465
Alignment:
Q  141 tccctgaatttaacaaacgtccatcaaaatagtccttccgtacaaatgctccgtta 196  Q
    ||||||||||| ||| |||||||||||||| |||| ||||| |||| |||||||||    
T  14338520 tccctgaatttcacagacgtccatcaaaatggtccctccgttcaaaagctccgtta 14338465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 145 - 199
Target Start/End: Original strand, 32516960 - 32517014
Alignment:
Q  145 tgaatttaacaaacgtccatcaaaatagtccttccgtacaaatgctccgttagtg 199  Q
    ||||||| ||| |||||||||||||| |||| ||||| |||| ||||||||||||    
T  32516960 tgaattttacatacgtccatcaaaattgtccctccgtccaaaagctccgttagtg 32517014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 140 - 244
Target Start/End: Original strand, 9398738 - 9398842
Alignment:
Q  140 gtccctgaatttaacaaacgtccatcaaaatagtccttccgtacaaatgctccgttagtgttgctgagttgtcgtcatgcatgtcatgttgtcttgtaca 239  Q
    |||||||||||| | | |||| ||||||||| |||| ||||| |||| | |||||||||| || |||  |||| |  |||||||  ||||||| ||||||    
T  9398738 gtccctgaattttatagacgttcatcaaaatggtccctccgtccaaaagttccgttagtggtgatgatgtgtcattttgcatgttgtgttgtcctgtaca 9398837  T
Q  240 cgtgt 244  Q
    |||||    
T  9398838 cgtgt 9398842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 238 - 266
Target Start/End: Complemental strand, 14338404 - 14338376
Alignment:
Q  238 cacgtgtacaaggaccaatttgatggaaa 266  Q
    |||||||||||||||||||||||||||||    
T  14338404 cacgtgtacaaggaccaatttgatggaaa 14338376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 238 - 266
Target Start/End: Original strand, 30891319 - 30891347
Alignment:
Q  238 cacgtgtacaaggaccaatttgatggaaa 266  Q
    |||||||||||||||||||||||||||||    
T  30891319 cacgtgtacaaggaccaatttgatggaaa 30891347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 120; Significance: 2e-61; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 62 - 274
Target Start/End: Original strand, 44972411 - 44972625
Alignment:
Q  62 gagtgaatacccaaattcgttcctgaattttcacgaatcgaacaaaaacgtcccccaattcatcgaaatgcacgctttgtccctgaatttaacaaacgtc 161  Q
    ||||||||||||||||| ||  |||| ||| ||||||||| ||||||  |||||  |||| |||||||||||| |||||||||| |||||||||||||||    
T  44972411 gagtgaatacccaaatttgtctctgactttgcacgaatcggacaaaagtgtcccataatttatcgaaatgcacactttgtccctaaatttaacaaacgtc 44972510  T
Q  162 catcaaaatagtccttccgtacaaatgctccgttagtgttgctgagttgtcgtcatgcatgtcatgttgtcttgtacacgtg--tacaaggaccaatttg 259  Q
    |||||||||||||||||||| |||||||||||||||||||||| || ||||||| | |||||| |||||||||| | |||||  ||||||||||||||||    
T  44972511 catcaaaatagtccttccgtccaaatgctccgttagtgttgctcagctgtcgtcctacatgtcctgttgtcttgaatacgtgtctacaaggaccaatttg 44972610  T
Q  260 atggaaacgctaaaa 274  Q
    |||||||||||||||    
T  44972611 atggaaacgctaaaa 44972625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 62 - 244
Target Start/End: Original strand, 50131162 - 50131344
Alignment:
Q  62 gagtgaatacccaaattcgttcctgaattttcacgaatcgaacaaaaacgtcccccaattcatcgaaatgcacgctttgtccctgaatttaacaaacgtc 161  Q
    ||||||||||||||||| || ||||||||| ||||||||| ||||||||||||||||||| |||||||||||||||| |||||||||||| |||||||||    
T  50131162 gagtgaatacccaaatttgtccctgaatttgcacgaatcggacaaaaacgtcccccaatttatcgaaatgcacgcttcgtccctgaatttgacaaacgtc 50131261  T
Q  162 catcaaaatagtccttccgtacaaatgctccgttagtgttgctgagttgtcgtcatgcatgtcatgttgtcttgtacacgtgt 244  Q
    ||||||||||||| |||||| ||||||||||  ||||| ||||||| | ||||| | ||||||||||||||||||||||||||    
T  50131262 catcaaaatagtcattccgtccaaatgctccagtagtgctgctgagctatcgtcctacatgtcatgttgtcttgtacacgtgt 50131344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 62 - 244
Target Start/End: Original strand, 27382117 - 27382299
Alignment:
Q  62 gagtgaatacccaaattcgttcctgaattttcacgaatcgaacaaaaacgtcccccaattcatcgaaatgcacgctttgtccctgaatttaacaaacgtc 161  Q
    ||||||||||| |||||||| |||||||||| |||||||| ||| ||||||||||||||||||| |||||||||||||||||||||||| ||||||||||    
T  27382117 gagtgaatacctaaattcgtccctgaatttttacgaatcggacataaacgtcccccaattcatcaaaatgcacgctttgtccctgaattcaacaaacgtc 27382216  T
Q  162 catcaaaatagtccttccgtacaaatgctccgttagtgttgctgagttgtcgtcatgcatgtcatgttgtcttgtacacgtgt 244  Q
    ||||||||||||| || ||| |||||| || ||||||| ||||||| | ||||| ||||||||||| ||||||||||||||||    
T  27382217 catcaaaatagtcatttcgtccaaatgttctgttagtgctgctgagctttcgtcctgcatgtcatggtgtcttgtacacgtgt 27382299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 62 - 269
Target Start/End: Complemental strand, 37481153 - 37480946
Alignment:
Q  62 gagtgaatacccaaattcgttcctgaattttcacgaatcgaacaaaaacgtcccccaattcatcgaaatgcacgctttgtccctgaatttaacaaacgtc 161  Q
    |||||||||||||||||||| | || |||| |||||||||  |||||||||| | ||||| |||||||||||||||| |||||||||||||||||| |||    
T  37481153 gagtgaatacccaaattcgtccgtggatttgcacgaatcggccaaaaacgtctcacaattaatcgaaatgcacgcttagtccctgaatttaacaaatgtc 37481054  T
Q  162 catcaaaatagtccttccgtacaaatgctccgttagtgttgctgagttgtcgtcatgcatgtcatgttgtcttgtacacgtgtacaaggaccaatttgat 261  Q
     |||||| |||||||||||| ||||||| |||| |||| |||||||||||| ||||||||| | |  |||||||||||||||||||| ||| ||||||||    
T  37481053 aatcaaattagtccttccgtccaaatgcaccgtcagtggtgctgagttgtcttcatgcatggcttcctgtcttgtacacgtgtacaaagacgaatttgat 37480954  T
Q  262 ggaaacgc 269  Q
     |||||||    
T  37480953 tgaaacgc 37480946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 62 - 244
Target Start/End: Complemental strand, 26297018 - 26296836
Alignment:
Q  62 gagtgaatacccaaattcgttcctgaattttcacgaatcgaacaaaaacgtcccccaattcatcgaaatgcacgctttgtccctgaatttaacaaacgtc 161  Q
    ||||||||| ||||||||||   |||||||  ||||||||   |||||||| || ||| | |||||||||||| ||||||||||||||||  ||||||||    
T  26297018 gagtgaatatccaaattcgtctttgaatttgtacgaatcggcaaaaaacgttcctcaagttatcgaaatgcacactttgtccctgaatttgtcaaacgtc 26296919  T
Q  162 catcaaaatagtccttccgtacaaatgctccgttagtgttgctgagttgtcgtcatgcatgtcatgttgtcttgtacacgtgt 244  Q
    ||||||||||||| |||| | |||||| || |||||||||| |||| ||||||| ||||||||||||||||||||||||||||    
T  26296918 catcaaaatagtcattccatccaaatgatctgttagtgttgatgagctgtcgtcttgcatgtcatgttgtcttgtacacgtgt 26296836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 60 - 175
Target Start/End: Original strand, 37474142 - 37474256
Alignment:
Q  60 acgagtgaatacccaaattcgttcctgaattttcacgaatcgaacaaaaacgtcccccaattcatcgaaatgcacgctttgtccctgaatttaacaaacg 159  Q
    |||||||||||| ||||||||| |||| |||| |||||||||  ||||||||||||||||||  ||| ||||||||||| ||  ||||||||||||||||    
T  37474142 acgagtgaatacacaaattcgtccctggatttgcacgaatcggccaaaaacgtcccccaattagtcg-aatgcacgcttagtttctgaatttaacaaacg 37474240  T
Q  160 tccatcaaaatagtcc 175  Q
    || |||||| ||||||    
T  37474241 tcaatcaaattagtcc 37474256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 62 - 149
Target Start/End: Complemental strand, 50133188 - 50133102
Alignment:
Q  62 gagtgaatacccaaattcgttcctgaattttcacgaatcgaacaaaaacgtcccccaattcatcgaaatgcacgctttgtccctgaat 149  Q
    ||||||||||||||||| || | ||||||| |||||||   ||||||||||||||||||| |||||||||||||||||||||||||||    
T  50133188 gagtgaatacccaaatt-gtccttgaatttgcacgaattagacaaaaacgtcccccaatttatcgaaatgcacgctttgtccctgaat 50133102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 62 - 151
Target Start/End: Complemental strand, 44974190 - 44974101
Alignment:
Q  62 gagtgaatacccaaattcgttcctgaattttcacgaatcgaacaaaaacgtcccccaattcatcgaaatgcacgctttgtccctgaattt 151  Q
    ||||||||| |||||| ||| ||||||||| || |||||| |||||||||||| |||||| |||||||| ||| ||||||||||| ||||    
T  44974190 gagtgaatatccaaatccgtccctgaatttgcaggaatcggacaaaaacgtcctccaatttatcgaaatacacactttgtccctgcattt 44974101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 141 - 243
Target Start/End: Original strand, 35996142 - 35996244
Alignment:
Q  141 tccctgaatttaacaaacgtccatcaaaatagtccttccgtacaaatgctccgttagtgttgctgagttgtcgtcatgcatgtcatgttgtcttgtacac 240  Q
    |||||||||||| || |||||||||||||  |||| ||||| ||| |||||||||||   ||||||  ||||| |||||||||  |||||||||||||||    
T  35996142 tccctgaatttatcagacgtccatcaaaaaggtccctccgtccaagtgctccgttagccatgctgacatgtcgccatgcatgttgtgttgtcttgtacac 35996241  T
Q  241 gtg 243  Q
    |||    
T  35996242 gtg 35996244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 140 - 244
Target Start/End: Original strand, 11601748 - 11601852
Alignment:
Q  140 gtccctgaatttaacaaacgtccatcaaaatagtccttccgtacaaatgctccgttagtgttgctgagttgtcgtcatgcatgtcatgttgtcttgtaca 239  Q
    |||||||||||| ||| ||||||||||||||||||| || || || | ||| |||||||| ||||||  |||| || ||| |||  ||||||| ||||||    
T  11601748 gtccctgaattttacagacgtccatcaaaatagtccctctgtccacaagcttcgttagtgatgctgatgtgtcctcttgcgtgttgtgttgtcatgtaca 11601847  T
Q  240 cgtgt 244  Q
    |||||    
T  11601848 cgtgt 11601852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 140 - 244
Target Start/End: Original strand, 42980713 - 42980817
Alignment:
Q  140 gtccctgaatttaacaaacgtccatcaaaatagtccttccgtacaaatgctccgttagtgttgctgagttgtcgtcatgcatgtcatgttgtcttgtaca 239  Q
    |||||| ||||| ||| |||||||||||||| |||| ||||| |||| |||| ||||||| || |||  |||| || |||||||  ||||||| ||||||    
T  42980713 gtcccttaattttacagacgtccatcaaaatggtccctccgtccaaaagctctgttagtggtgatgatgtgtcctcttgcatgttgtgttgtcctgtaca 42980812  T
Q  240 cgtgt 244  Q
    |||||    
T  42980813 cgtgt 42980817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 144 - 266
Target Start/End: Complemental strand, 52868191 - 52868069
Alignment:
Q  144 ctgaatttaacaaacgtccatcaaaatagtccttccgtacaaatgctccgttagtgttgctgagttgtcgtcatgcatgtcatgttgtcttgtacacgtg 243  Q
    |||||||||||| ||| | |||||||| |||  | ||| |||| ||||||||||||  | |||  |||| || ||||||   ||||||| ||||||||||    
T  52868191 ctgaatttaacagacgcctatcaaaatggtcacttcgtccaaaagctccgttagtggcgatgacgtgtcctcttgcatgctgtgttgtcatgtacacgtg 52868092  T
Q  244 tacaaggaccaatttgatggaaa 266  Q
    ||||||||| || ||||||||||    
T  52868091 tacaaggactaaattgatggaaa 52868069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 238 - 274
Target Start/End: Original strand, 27382312 - 27382348
Alignment:
Q  238 cacgtgtacaaggaccaatttgatggaaacgctaaaa 274  Q
    ||||||||||||||| |||||||||||||||||||||    
T  27382312 cacgtgtacaaggactaatttgatggaaacgctaaaa 27382348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 140 - 244
Target Start/End: Complemental strand, 41761792 - 41761688
Alignment:
Q  140 gtccctgaatttaacaaacgtccatcaaaatagtccttccgtacaaatgctccgttagtgttgctgagttgtcgtcatgcatgtcatgttgtcttgtaca 239  Q
    |||||||||||| ||| |||||||||||||| |||| ||||| |||| ||| |||||||| || |||  |||| || ||||||   |||| || ||||||    
T  41761792 gtccctgaattttacagacgtccatcaaaatggtccctccgtccaaaagcttcgttagtggtgatgatgtgtcctcttgcatgctgtgttctcatgtaca 41761693  T
Q  240 cgtgt 244  Q
    |||||    
T  41761692 cgtgt 41761688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 140 - 244
Target Start/End: Complemental strand, 48646793 - 48646689
Alignment:
Q  140 gtccctgaatttaacaaacgtccatcaaaatagtccttccgtacaaatgctccgttagtgttgctgagttgtcgtcatgcatgtcatgttgtcttgtaca 239  Q
    |||||||||||| ||| || | ||||||||| |||||||||| |||| ||| |||||||| || |||  |||| || |||||||  ||||||| | ||||    
T  48646793 gtccctgaattttacagaccttcatcaaaatggtccttccgtccaaaagcttcgttagtggtgatgatgtgtcctcttgcatgttgtgttgtcatttaca 48646694  T
Q  240 cgtgt 244  Q
    |||||    
T  48646693 cgtgt 48646689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 140 - 244
Target Start/End: Original strand, 49523202 - 49523306
Alignment:
Q  140 gtccctgaatttaacaaacgtccatcaaaatagtccttccgtacaaatgctccgttagtgttgctgagttgtcgtcatgcatgtcatgttgtcttgtaca 239  Q
    |||||||||||| ||| |||| ||||||||| |||| ||||| ||||   |||||||||| || |||  || | || |||||||  ||||||||||||||    
T  49523202 gtccctgaattttacagacgttcatcaaaatggtccctccgtccaaaaaatccgttagtggtgatgatgtgccttcttgcatgttgtgttgtcttgtaca 49523301  T
Q  240 cgtgt 244  Q
    |||||    
T  49523302 cgtgt 49523306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 141 - 244
Target Start/End: Complemental strand, 35404490 - 35404387
Alignment:
Q  141 tccctgaatttaacaaacgtccatcaaaatagtccttccgtacaaatgctccgttagtgttgctgagttgtcgtcatgcatgtcatgttgtcttgtacac 240  Q
    ||||||||||| ||| ||||||| |||||| |||| ||||| |||| |||||||||||| || |||  |||| || | |||||  ||||||| ||||||     
T  35404490 tccctgaattttacagacgtccaacaaaatggtccatccgtccaaaagctccgttagtggtgatgacgtgtcctcttccatgttgtgttgtcatgtacat 35404391  T
Q  241 gtgt 244  Q
    ||||    
T  35404390 gtgt 35404387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 140 - 199
Target Start/End: Original strand, 41781617 - 41781676
Alignment:
Q  140 gtccctgaatttaacaaacgtccatcaaaatagtccttccgtacaaatgctccgttagtg 199  Q
    |||||||||||| ||| || ||||||||||| |||| ||||| |||| ||||||||||||    
T  41781617 gtccctgaattttacagacatccatcaaaatggtccctccgtccaaaagctccgttagtg 41781676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 73 - 131
Target Start/End: Original strand, 9590312 - 9590370
Alignment:
Q  73 caaattcgttcctgaattttcacgaatcgaacaaaaacgtcccccaattcatcgaaatg 131  Q
    ||||||||||| ||||||| ||||||||| |||||||  ||| |||||| |||||||||    
T  9590312 caaattcgttcttgaatttgcacgaatcggacaaaaatatcctccaatttatcgaaatg 9590370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 268
Target Start/End: Complemental strand, 13450962 - 13450916
Alignment:
Q  226 tgttgtcttgtacacgtg----tacaaggaccaatttgatggaaacg 268  Q
    ||||||||||||||||||    |||||||||||||||||||||||||    
T  13450962 tgttgtcttgtacacgtgggtgtacaaggaccaatttgatggaaacg 13450916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0204 (Bit Score: 111; Significance: 5e-56; HSPs: 2)
Name: scaffold0204
Description:

Target: scaffold0204; HSP #1
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 62 - 244
Target Start/End: Complemental strand, 30595 - 30413
Alignment:
Q  62 gagtgaatacccaaattcgttcctgaattttcacgaatcgaacaaaaacgtcccccaattcatcgaaatgcacgctttgtccctgaatttaacaaacgtc 161  Q
    ||||||||||| |||||||| |||| ||||||| |||||||||||||| ||| ||||||| |||||||||||| ||||||||||||||||||||||||||    
T  30595 gagtgaatacctaaattcgtccctggattttcatgaatcgaacaaaaatgtcacccaattaatcgaaatgcacactttgtccctgaatttaacaaacgtc 30496  T
Q  162 catcaaaatagtccttccgtacaaatgctccgttagtgttgctgagttgtcgtcatgcatgtcatgttgtcttgtacacgtgt 244  Q
     ||||||||||| ||||||| ||||||||||||||||| || | ||||||| || |||||| | |||||||||||||||||||    
T  30495 aatcaaaatagttcttccgtccaaatgctccgttagtgctgtttagttgtcttcctgcatggcttgttgtcttgtacacgtgt 30413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0204; HSP #2
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 62 - 175
Target Start/End: Original strand, 28341 - 28454
Alignment:
Q  62 gagtgaatacccaaattcgttcctgaattttcacgaatcgaacaaaaacgtcccccaattcatcgaaatgcacgctttgtccctgaatttaacaaacgtc 161  Q
    |||||||||| ||||||||| | || |||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||    
T  28341 gagtgaatactcaaattcgtccttggattttcacgaatcgaacaaaaacgtcccccaattaatcgaaatgcactctttgtccctgaatttaacaaacgtc 28440  T
Q  162 catcaaaatagtcc 175  Q
     |||||||||||||    
T  28441 aatcaaaatagtcc 28454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 3e-17; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 62 - 191
Target Start/End: Complemental strand, 15459313 - 15459184
Alignment:
Q  62 gagtgaatacccaaattcgttcctgaattttcacgaatcgaacaaaaacgtcccccaattcatcgaaatgcacgctttgtccctgaatttaacaaacgtc 161  Q
    |||||||||  ||||||||| | ||||||| || | |||| |||||| |||||||||||| |||||||||     ||||| ||||||||||||| |||||    
T  15459313 gagtgaatagtcaaattcgtccttgaatttgcaaggatcggacaaaatcgtcccccaatttatcgaaatggctattttgttcctgaatttaacagacgtc 15459214  T
Q  162 catcaaaatagtccttccgtacaaatgctc 191  Q
    ||||||||| |||| | ||| |||||||||    
T  15459213 catcaaaatggtcccttcgtccaaatgctc 15459184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 140 - 244
Target Start/End: Original strand, 8539753 - 8539857
Alignment:
Q  140 gtccctgaatttaacaaacgtccatcaaaatagtccttccgtacaaatgctccgttagtgttgctgagttgtcgtcatgcatgtcatgttgtcttgtaca 239  Q
    |||||||||||| ||||||||||||||||||||||  ||| | |||| ||||||||||||||| ||   |||| || |||||||  ||||||| ||||||    
T  8539753 gtccctgaattttacaaacgtccatcaaaatagtcgctccatccaaaagctccgttagtgttgatggtgtgtcctcttgcatgttgtgttgtcatgtaca 8539852  T
Q  240 cgtgt 244  Q
    |||||    
T  8539853 cgtgt 8539857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 140 - 244
Target Start/End: Complemental strand, 18625054 - 18624950
Alignment:
Q  140 gtccctgaatttaacaaacgtccatcaaaatagtccttccgtacaaatgctccgttagtgttgctgagttgtcgtcatgcatgtcatgttgtcttgtaca 239  Q
    |||||||||||| |||  ||||||||||||| |||||||||| |||| |||||||||||  || |||  |||| || |||||||  ||||||||| ||||    
T  18625054 gtccctgaattttacactcgtccatcaaaatggtccttccgtccaaaagctccgttagtagtgatgatgtgtcttcttgcatgttgtgttgtcttataca 18624955  T
Q  240 cgtgt 244  Q
    |||||    
T  18624954 cgtgt 18624950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 140 - 244
Target Start/End: Complemental strand, 30468326 - 30468222
Alignment:
Q  140 gtccctgaatttaacaaacgtccatcaaaatagtccttccgtacaaatgctccgttagtgttgctgagttgtcgtcatgcatgtcatgttgtcttgtaca 239  Q
    |||| ||||||| ||| |||||||||||||| |||| ||||| |||| |||||||||||| || |||  |||| || |||||||  ||||||| ||||||    
T  30468326 gtccttgaattttacagacgtccatcaaaatggtccctccgtccaaaagctccgttagtggtgatgacgtgtcctcttgcatgttgtgttgtcatgtaca 30468227  T
Q  240 cgtgt 244  Q
    |||||    
T  30468226 cgtgt 30468222  T

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Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 142 - 244
Target Start/End: Complemental strand, 36057657 - 36057555
Alignment:
Q  142 ccctgaatttaacaaacgtccatcaaaatagtccttccgtacaaatgctccgttagtgttgctgagttgtcgtcatgcatgtcatgttgtcttgtacacg 241  Q
    |||||||||| ||| |||||||||||||| |||| ||||| |||| ||||||||| || || |||  |||| || |||||||  ||||||| ||||||||    
T  36057657 ccctgaattttacagacgtccatcaaaatggtccctccgtccaaaagctccgttaatggtgatgatgtgtcatcttgcatgttgtgttgtcatgtacacg 36057558  T
Q  242 tgt 244  Q
    |||    
T  36057557 tgt 36057555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 140 - 244
Target Start/End: Original strand, 17574396 - 17574499
Alignment:
Q  140 gtccctgaatttaacaaacgtccatcaaaatagtccttccgtacaaatgctccgttagtgttgctgagttgtcgtcatgcatgtcatgttgtcttgtaca 239  Q
    |||||||||||| ||| |||||||||||||| |||| ||||| |||| |||||||||||| || |||  ||||  | ||||||   ||||||||||||||    
T  17574396 gtccctgaattttacagacgtccatcaaaatggtccctccgtccaaaagctccgttagtggtgatgacgtgtc-ccttgcatgctgtgttgtcttgtaca 17574494  T
Q  240 cgtgt 244  Q
    |||||    
T  17574495 cgtgt 17574499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 141 - 244
Target Start/End: Original strand, 2179866 - 2179969
Alignment:
Q  141 tccctgaatttaacaaacgtccatcaaaatagtccttccgtacaaatgctccgttagtgttgctgagttgtcgtcatgcatgtcatgttgtcttgtacac 240  Q
    ||||||||||| ||| || ||||||||||| |||| ||||| |||| ||||| |||||| || |||  |||| || |||||||  ||||||| |||||||    
T  2179866 tccctgaattttacagacatccatcaaaatggtccctccgtccaaaagctccattagtggtgatgacatgtcctcttgcatgttgtgttgtcatgtacac 2179965  T
Q  241 gtgt 244  Q
    ||||    
T  2179966 gtgt 2179969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 140 - 244
Target Start/End: Original strand, 34327713 - 34327817
Alignment:
Q  140 gtccctgaatttaacaaacgtccatcaaaatagtccttccgtacaaatgctccgttagtgttgctgagttgtcgtcatgcatgtcatgttgtcttgtaca 239  Q
    |||||||||||| ||| |||||||||||||| |||  ||||| |||| |||| ||||||| || |||  |||| || |||||||   |||||| ||||||    
T  34327713 gtccctgaattttacagacgtccatcaaaatggtctctccgtccaaaagctctgttagtggtgatgatgtgtcctcttgcatgttgcgttgtcatgtaca 34327812  T
Q  240 cgtgt 244  Q
    |||||    
T  34327813 cgtgt 34327817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 140 - 199
Target Start/End: Original strand, 7267921 - 7267980
Alignment:
Q  140 gtccctgaatttaacaaacgtccatcaaaatagtccttccgtacaaatgctccgttagtg 199  Q
    |||||||||||| ||| ||||||||||||||  ||| ||||| |||| ||||||||||||    
T  7267921 gtccctgaattttacagacgtccatcaaaatgatccctccgtccaaaagctccgttagtg 7267980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 238 - 269
Target Start/End: Original strand, 13452086 - 13452117
Alignment:
Q  238 cacgtgtacaaggaccaatttgatggaaacgc 269  Q
    ||||||||||||||||||||||||||||||||    
T  13452086 cacgtgtacaaggaccaatttgatggaaacgc 13452117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 141 - 244
Target Start/End: Original strand, 24496822 - 24496925
Alignment:
Q  141 tccctgaatttaacaaacgtccatcaaaatagtccttccgtacaaatgctccgttagtgttgctgagttgtcgtcatgcatgtcatgttgtcttgtacac 240  Q
    |||||||||||   | |||| ||||||||| |||| ||||| |||||| || |||| | |||||||  ||||||| ||||||  ||||||||| ||||||    
T  24496822 tccctgaatttgtgagacgttcatcaaaatggtccatccgtccaaatgttctgttactattgctgatctgtcgtcctgcatgctatgttgtctcgtacac 24496921  T
Q  241 gtgt 244  Q
    ||||    
T  24496922 gtgt 24496925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1454 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold1454
Description:

Target: scaffold1454; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 140 - 199
Target Start/End: Original strand, 1341 - 1400
Alignment:
Q  140 gtccctgaatttaacaaacgtccatcaaaatagtccttccgtacaaatgctccgttagtg 199  Q
    |||||||||||| ||| |||||||||||||| |||| ||||| |||| ||||||||||||    
T  1341 gtccctgaattttacagacgtccatcaaaatggtccctccgtccaaaagctccgttagtg 1400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0722 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0722
Description:

Target: scaffold0722; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 241 - 269
Target Start/End: Complemental strand, 4775 - 4747
Alignment:
Q  241 gtgtacaaggaccaatttgatggaaacgc 269  Q
    |||||||||||||||||||||||||||||    
T  4775 gtgtacaaggaccaatttgatggaaacgc 4747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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