View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2671_low_16 (Length: 316)
Name: NF2671_low_16
Description: NF2671
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2671_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 1 - 300
Target Start/End: Complemental strand, 30789731 - 30789432
Alignment:
| Q |
1 |
actagagaggtcaaaaagacagccgaagtacctggttctaaaatgagtcattgtacgaaaaacttgaacaattgtcttccacaacaaaattgaaaatttc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30789731 |
actagagaggtcaaaaagacagccgaagtacctggttcaaaaatgagtcattgtacgaaaaacttgaacaattgtcttccacaacaaaattgaaaatttc |
30789632 |
T |
|
| Q |
101 |
aacaaagaggtcaaggattcactataaaccctgttataacttagtttaaaatttaaagtaaaaagagtaacagtttttgatcttatccacgtcaaaagat |
200 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30789631 |
aacaaagaggtcaaggattcactataaacactgttataacttagtttaaaatttaaagtaaaaagagtaacagtttttgatcttatccacgtcaaaagat |
30789532 |
T |
|
| Q |
201 |
tgacattaaaagctaaagcagattattatgtgaatgttctgccattgttattagttgagagggaataaaaatagagtgggggtgagacagtgcttctttt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30789531 |
tgacattaaaagctaaagcagattattatgtgaatgttctgccattgttattagttgagagggaataaaaatagagtgggggtgagacagtgcttctttt |
30789432 |
T |
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