View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2671_low_2 (Length: 838)
Name: NF2671_low_2
Description: NF2671
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2671_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 750; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 750; E-Value: 0
Query Start/End: Original strand, 1 - 820
Target Start/End: Complemental strand, 48482793 - 48481974
Alignment:
| Q |
1 |
gctgctactttttcttctgaattttctcnnnnnnnggagggcagcaaagtcatttatgtccataatcaatatatagatttttatggaagtaagcatttag |
100 |
Q |
| |
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|||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48482793 |
gctgctactttttcttctgaatttgctctttttttggagggcagcaaagtcatttatgtccataatcaatatatagatttttatggaagtaagcatttag |
48482694 |
T |
|
| Q |
101 |
ttacatggctattacttccgctgctgggaaaatatgttgatattgtttaaatgtacagttgcgttctacagtgaagaaggggactcaaataacacagacg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48482693 |
ttacatggctattacttccgctgctgggaaaatatgttgatattgtttaaatgtacagttgcgttctacagtgaagaaggggactcaaataacacagacg |
48482594 |
T |
|
| Q |
201 |
ctaatatattgtgcagttcacaggtttgagctctggtctttcaattatgctaatcttattttccatgtgttcttttgaaaaactgtttttacattttaat |
300 |
Q |
| |
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||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48482593 |
ctaatatattgcgcagttcacaggtttgagctctggtcttccaattatgctaatcttattttccatgtgttcttttgaaaaactgtttttacattttaat |
48482494 |
T |
|
| Q |
301 |
ttcattttagggtcccaaatccagattcagtagtggttgtgcatacccctctgggggtattctctccaagaacttcacttcaaaatcacaagggacgctt |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48482493 |
ttcattttagggtcccaaatccagattcagtagtggttgtgcatacccctctgggggtattctctccaagaacttcacttcaaaatcacaagggacgctt |
48482394 |
T |
|
| Q |
401 |
tagaggatcaaagcttatttcatcaaataacttagaactccttgaaccttcaacctctgaacattatgaggttgagccaatatctgccgccaagtgtcgt |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
48482393 |
tagaggatcaaagcttatttcatcaaataacttagaactccttgaaccttcaacctctgaacattatgaggttgagccaatatctgccgccaagtgtcgt |
48482294 |
T |
|
| Q |
501 |
gtttacaaaaggcctccaaataaggtacttattttcattgcnnnnnnngaacaagtttagatcaagttatcaacttctctaggcttctgctttgaattca |
600 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
48482293 |
gtttacaaaaggcctcccaataaggtacttattttcatcgcaaaaaaagaacaagtttagatcaagttatcaacttctctaggcttctgctttgaattca |
48482194 |
T |
|
| Q |
601 |
tacatagtcacttgcggtttttctgctgcctcgaaaactatgtaatagattgttatctaatttctttaatttggtctcattcaatactttttcttctata |
700 |
Q |
| |
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||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
48482193 |
tacatagtcacttgcagtttttctgctgcatcgaaaactatgtaatagattgttatctaatttctttaatttggtctcattcaatactttttcttctata |
48482094 |
T |
|
| Q |
701 |
ttgccagaaggatgatgcaccaataattcacttgcttgggggaccaaaccttcattctttaagtgcaataactcaattgaacaacaatacggtaatcttc |
800 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
48482093 |
ttgccagaaggatgatgcaccaataattcacttgcttgggggaccaaaccttcattctttaagtgcaataactcaattgaacaacaatacggtaatcttc |
48481994 |
T |
|
| Q |
801 |
ttgttttggtgttctgagct |
820 |
Q |
| |
|
|||||||||||||||||||| |
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|
| T |
48481993 |
ttgttttggtgttctgagct |
48481974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 721 - 796
Target Start/End: Original strand, 10040164 - 10040239
Alignment:
| Q |
721 |
caataattcacttgcttgggggaccaaaccttcattctttaagtgcaataactcaattgaacaacaatacggtaat |
796 |
Q |
| |
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|||| ||||| ||||| ||||||| | |||||||||||| ||| ||||||||||||||||||| ||| |||||| |
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| T |
10040164 |
caattattcatttgctgaggggacccagtcttcattctttaggtgaaataactcaattgaacaactataaggtaat |
10040239 |
T |
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