View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2671_low_23 (Length: 224)
Name: NF2671_low_23
Description: NF2671
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2671_low_23 |
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Alignment Details
Target: chr1 (Bit Score: 108; Significance: 2e-54; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 79 - 206
Target Start/End: Original strand, 5536790 - 5536917
Alignment:
| Q |
79 |
gaagaaaccccatatcaattttgaatttaatttgtctttcaacaaggaatcataatcgaaaaaaggttagcaattaagtataaaattcgttttatgtcat |
178 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| ||||||||||| |
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| T |
5536790 |
gaagaaaccccatatcaattttgaatttaatttgtctttcaacaaggaatcataatcgaaaaaaggttagcaattgagtatagaattcattttatgtcat |
5536889 |
T |
|
| Q |
179 |
tcaaacaaagcagatttatcagattcaa |
206 |
Q |
| |
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|||| ||||||| ||||||||||||||| |
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|
| T |
5536890 |
tcaagcaaagcatatttatcagattcaa |
5536917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 80 - 206
Target Start/End: Original strand, 49837764 - 49837890
Alignment:
| Q |
80 |
aagaaaccccatatcaattttgaatttaatttgtctttcaacaaggaatcataatcgaaaaaaggttagcaattaagtataaaattcgttttatgtcatt |
179 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |||||||||||||||||| |
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| T |
49837764 |
aagaaaccccatatcaattttgaatttaatttgtctttcaacaaagaatcataatcgaaaaaaggttagcaattgagtattgaattcgttttatgtcatt |
49837863 |
T |
|
| Q |
180 |
caaacaaagcagatttatcagattcaa |
206 |
Q |
| |
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||| ||||||||||||||||||||||| |
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|
| T |
49837864 |
caagcaaagcagatttatcagattcaa |
49837890 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 79 - 206
Target Start/End: Complemental strand, 34966767 - 34966640
Alignment:
| Q |
79 |
gaagaaaccccatatcaattttgaatttaatttgtctttcaacaaggaatcataatcgaaaaaaggttagcaattaagtataaaattcgttttatgtcat |
178 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||| |||||| ||||||||||||||||| |
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| T |
34966767 |
gaagaaaccctatatcaattttgaatttaatttgtcttttaacaaggaatcataatcgaaaaaaggtttgcaattgagtatagaattcgttttatgtcat |
34966668 |
T |
|
| Q |
179 |
tcaaacaaagcagatttatcagattcaa |
206 |
Q |
| |
|
|||| ||||||||||||||||||||||| |
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|
| T |
34966667 |
tcaagcaaagcagatttatcagattcaa |
34966640 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 79 - 206
Target Start/End: Original strand, 37467205 - 37467332
Alignment:
| Q |
79 |
gaagaaaccccatatcaattttgaatttaatttgtctttcaacaaggaatcataatcgaaaaaaggttagcaattaagtataaaattcgttttatgtcat |
178 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| |||||| ||||||||| ||||||| |
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| T |
37467205 |
gaagaaaccccatatcaattttgaatttaatttttctttcaacaaggaatcataatcgaaaaaaggttagtaattgagtatataattcgtttcatgtcat |
37467304 |
T |
|
| Q |
179 |
tcaaacaaagcagatttatcagattcaa |
206 |
Q |
| |
|
|||| ||| |||||||||||||||||| |
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|
| T |
37467305 |
tcaagcaagacagatttatcagattcaa |
37467332 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 79 - 206
Target Start/End: Complemental strand, 46593277 - 46593150
Alignment:
| Q |
79 |
gaagaaaccccatatcaattttgaatttaatttgtctttcaacaaggaatcataatcgaaaaaaggttagcaattaagtataaaattcgttttatgtcat |
178 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| | |||| ||||||||||||||||| |
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|
| T |
46593277 |
gaagaaaccctatatcaattttgaatttaatttgcctttcaacaaggaatcataatcgaaaaaaggttttcaattgaatatagaattcgttttatgtcat |
46593178 |
T |
|
| Q |
179 |
tcaaacaaagcagatttatcagattcaa |
206 |
Q |
| |
|
|||| ||||||||||||||||||||||| |
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|
| T |
46593177 |
tcaagcaaagcagatttatcagattcaa |
46593150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 104; Significance: 5e-52; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 79 - 206
Target Start/End: Complemental strand, 29260995 - 29260868
Alignment:
| Q |
79 |
gaagaaaccccatatcaattttgaatttaatttgtctttcaacaaggaatcataatcgaaaaaaggttagcaattaagtataaaattcgttttatgtcat |
178 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||| | |||| |
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|
| T |
29260995 |
gaagaaaccccatatcaattttgaatttaatttgtctttcaacaaggaatcataatcgaaaaaaggttagcaattgagtatagaattcgttttctttcat |
29260896 |
T |
|
| Q |
179 |
tcaaacaaagcagatttatcagattcaa |
206 |
Q |
| |
|
|||| |||||||||||||||| |||||| |
|
|
| T |
29260895 |
tcaagcaaagcagatttatcatattcaa |
29260868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 79 - 199
Target Start/End: Complemental strand, 7439269 - 7439149
Alignment:
| Q |
79 |
gaagaaaccccatatcaattttgaatttaatttgtctttcaacaaggaatcataatcgaaaaaaggttagcaattaagtataaaattcgttttatgtcat |
178 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||| |
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|
| T |
7439269 |
gaagaaaccccatatcgattttgaatttaatttgtgtttcaacaaggaatcataatcgaaaaaaggttagcaattgagtatagaattcgttttatgtcat |
7439170 |
T |
|
| Q |
179 |
tcaaacaaagcagatttatca |
199 |
Q |
| |
|
|||| ||||| |||||||||| |
|
|
| T |
7439169 |
tcaagcaaagtagatttatca |
7439149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 83 - 206
Target Start/End: Complemental strand, 15286806 - 15286683
Alignment:
| Q |
83 |
aaaccccatatcaattttgaatttaatttgtctttcaacaaggaatcataatcgaaaaaaggttagcaattaagtataaaattcgttttatgtcattcaa |
182 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||| |||||| ||||||||||||||||||||| |
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|
| T |
15286806 |
aaacctcatatcaattttgaatttaatttgtctttcaacaaggaatcataatcaaaaagaggttagcaattgagtatagaattcgttttatgtcattcaa |
15286707 |
T |
|
| Q |
183 |
acaaagcagatttatcagattcaa |
206 |
Q |
| |
|
||||||| |||||||| |||||| |
|
|
| T |
15286706 |
gcaaagcaaatttatcatattcaa |
15286683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 104; Significance: 5e-52; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 79 - 206
Target Start/End: Complemental strand, 15791150 - 15791023
Alignment:
| Q |
79 |
gaagaaaccccatatcaattttgaatttaatttgtctttcaacaaggaatcataatcgaaaaaaggttagcaattaagtataaaattcgttttatgtcat |
178 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||| |||||||||||| |
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|
| T |
15791150 |
gaagaaacaccatatcaattttgaatttaatttgtctttcaacaaggaatcataatcgaaaaaaggttagcaattgagtatataatttgttttatgtcat |
15791051 |
T |
|
| Q |
179 |
tcaaacaaagcagatttatcagattcaa |
206 |
Q |
| |
|
|||| ||||||| ||||||||||||||| |
|
|
| T |
15791050 |
tcaagcaaagcaaatttatcagattcaa |
15791023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 100; Significance: 1e-49; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 79 - 206
Target Start/End: Complemental strand, 36283250 - 36283123
Alignment:
| Q |
79 |
gaagaaaccccatatcaattttgaatttaatttgtctttcaacaaggaatcataatcgaaaaaaggttagcaattaagtataaaattcgttttatgtcat |
178 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| ||||||||| || |
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|
| T |
36283250 |
gaagaaaccccatatcaattttgaatttaatttgtctttcaagaaggaatcataatcgaaaaaaggttagcaattgagtataaaatttgttttatgtaat |
36283151 |
T |
|
| Q |
179 |
tcaaacaaagcagatttatcagattcaa |
206 |
Q |
| |
|
|||| ||||||| |||||| |||||||| |
|
|
| T |
36283150 |
tcaagcaaagcatatttatgagattcaa |
36283123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 111 - 206
Target Start/End: Original strand, 41893093 - 41893188
Alignment:
| Q |
111 |
tgtctttcaacaaggaatcataatcgaaaaaaggttagcaattaagtataaaattcgttttatgtcattcaaacaaagcagatttatcagattcaa |
206 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||| |||||| ||||||||||||||||||||| ||||||||||||||||||||||| |
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|
| T |
41893093 |
tgtctttcaacaaggaatcataatcaaaaaaaggttagcaattgagtatagaattcgttttatgtcattcaagcaaagcagatttatcagattcaa |
41893188 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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