View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2671_low_3 (Length: 756)

Name: NF2671_low_3
Description: NF2671
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2671_low_3
NF2671_low_3
[»] chr6 (15 HSPs)
chr6 (158-295)||(11114868-11115005)
chr6 (187-291)||(11124317-11124424)
chr6 (435-506)||(11129090-11129162)
chr6 (435-506)||(11124731-11124803)
chr6 (506-581)||(8066368-8066443)
chr6 (468-506)||(11148126-11148164)
chr6 (442-506)||(11140806-11140871)
chr6 (505-578)||(22849077-22849150)
chr6 (505-578)||(19577840-19577913)
chr6 (505-580)||(1636352-1636427)
chr6 (506-568)||(9519461-9519524)
chr6 (46-105)||(11114394-11114453)
chr6 (519-568)||(20004495-20004545)
chr6 (505-578)||(14639011-14639084)
chr6 (505-554)||(19594281-19594330)
[»] chr4 (6 HSPs)
chr4 (621-712)||(7583574-7583665)
chr4 (505-578)||(11782199-11782272)
chr4 (505-561)||(8968376-8968432)
chr4 (506-574)||(17335661-17335729)
chr4 (525-579)||(10106013-10106067)
chr4 (505-554)||(17108462-17108511)
[»] chr8 (9 HSPs)
chr8 (654-731)||(23868301-23868378)
chr8 (506-572)||(21230651-21230717)
chr8 (505-555)||(24520304-24520354)
chr8 (508-580)||(23882173-23882245)
chr8 (505-579)||(13313552-13313626)
chr8 (680-731)||(13313786-13313837)
chr8 (506-596)||(15176737-15176827)
chr8 (506-569)||(24109339-24109402)
chr8 (510-563)||(29765702-29765755)
[»] chr7 (5 HSPs)
chr7 (618-712)||(8977734-8977829)
chr7 (505-574)||(3172980-3173049)
chr7 (506-569)||(17189819-17189882)
chr7 (681-731)||(17078307-17078357)
chr7 (506-555)||(11804441-11804490)
[»] chr5 (5 HSPs)
chr5 (505-577)||(15199205-15199277)
chr5 (506-578)||(19007131-19007203)
chr5 (519-578)||(20548769-20548828)
chr5 (513-562)||(23215140-23215189)
chr5 (505-578)||(29987675-29987748)
[»] scaffold0056 (1 HSPs)
scaffold0056 (505-578)||(22756-22829)
[»] chr3 (6 HSPs)
chr3 (506-551)||(18747568-18747613)
chr3 (506-576)||(2166341-2166411)
chr3 (505-578)||(18457414-18457487)
chr3 (506-578)||(12771507-12771579)
chr3 (505-575)||(8144970-8145040)
chr3 (520-568)||(19169785-19169834)
[»] scaffold0451 (1 HSPs)
scaffold0451 (505-569)||(5459-5523)
[»] chr2 (6 HSPs)
chr2 (507-563)||(17350723-17350779)
chr2 (519-581)||(25886510-25886572)
chr2 (662-709)||(27540676-27540723)
chr2 (506-572)||(22568788-22568854)
chr2 (511-600)||(29144331-29144420)
chr2 (506-578)||(17674295-17674367)
[»] chr1 (4 HSPs)
chr1 (505-575)||(15542087-15542157)
chr1 (520-578)||(16817426-16817484)
chr1 (506-551)||(21333373-21333418)
chr1 (519-568)||(27546120-27546169)
[»] scaffold0111 (1 HSPs)
scaffold0111 (506-575)||(21199-21268)


Alignment Details
Target: chr6 (Bit Score: 62; Significance: 2e-26; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 158 - 295
Target Start/End: Original strand, 11114868 - 11115005
Alignment:
Q  158 aagcttgaaatgaccaaaagaaaatttttgagaattatcaattgaagtgatttaaaactatgagagaaaccacgaatttatagggattttattatgatcc 257  Q
    ||||||||||||||||||||| ||    ||||| ||||||||| |||| || |||| ||||||||||||||| |||||||||||||||| | ||||||      
T  11114868 aagcttgaaatgaccaaaagataagaggtgagatttatcaattcaagtaatgtaaagctatgagagaaaccatgaatttatagggatttcactatgatgt 11114967  T
Q  258 catattgaacataaataaatgcagtcaaacaaataatt 295  Q
    ||| | |||||||||||||||||||||||  |||||||    
T  11114968 catttcgaacataaataaatgcagtcaaaagaataatt 11115005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 187 - 291
Target Start/End: Original strand, 11124317 - 11124424
Alignment:
Q  187 gagaattatcaattgaagtgatttaaaactatgagagaaaccac-gaatttatagggattttattat--gatcccatattgaacataaataaatgcagtc 283  Q
    |||| ||||||||| ||||||| |||||||||||  |||||||  |||||||||||||||| | |||  |||| ||| ||||||||||||||||||||||    
T  11124317 gagatttatcaattcaagtgatgtaaaactatgaatgaaaccattgaatttatagggatttcactatatgatctcattttgaacataaataaatgcagtc 11124416  T
Q  284 aaacaaat 291  Q
    ||||||||    
T  11124417 aaacaaat 11124424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 435 - 506
Target Start/End: Original strand, 11129090 - 11129162
Alignment:
Q  435 taattgaaaatattattatattattttgg-caaataatagtttaaaagtaaaacacataaatatggtttagat 506  Q
    ||||| ||||||||||||||| ||||||| |||||||||||||| |||||||||||||||||||||| |||||    
T  11129090 taattaaaaatattattatatcattttggtcaaataatagtttacaagtaaaacacataaatatggtctagat 11129162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 435 - 506
Target Start/End: Original strand, 11124731 - 11124803
Alignment:
Q  435 taattgaaaatattattatattattttgg-caaataatagtttaaaagtaaaacacataaatatggtttagat 506  Q
    ||||| ||||||||||||||| ||||||| |||||||||||||| |||||||| ||||||||||||| |||||    
T  11124731 taattaaaaatattattatatcattttggtcaaataatagtttacaagtaaaatacataaatatggtctagat 11124803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 506 - 581
Target Start/End: Complemental strand, 8066443 - 8066368
Alignment:
Q  506 tgttcccaagtttcgaggtaagttatttgaaaatgaagacctaaaacgacagaaaatcagagaaactgggcccgga 581  Q
    |||||||| ||  ||||| |||||||||||| | ||| |||||||||||||||||||| ||||||||||| |||||    
T  8066443 tgttcccaggtcccgaggcaagttatttgaagaggaacacctaaaacgacagaaaatcggagaaactgggtccgga 8066368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 468 - 506
Target Start/End: Original strand, 11148126 - 11148164
Alignment:
Q  468 taatagtttaaaagtaaaacacataaatatggtttagat 506  Q
    |||||||||||||||||||||||||||||||||||||||    
T  11148126 taatagtttaaaagtaaaacacataaatatggtttagat 11148164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 442 - 506
Target Start/End: Original strand, 11140806 - 11140871
Alignment:
Q  442 aaatattattatattattttgg-caaataatagtttaaaagtaaaacacataaatatggtttagat 506  Q
    ||||||||||| || ||||||| |||||||||||||| |||| ||||||||||||||||| |||||    
T  11140806 aaatattattacatcattttggtcaaataatagtttacaagtgaaacacataaatatggtctagat 11140871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 505 - 578
Target Start/End: Original strand, 22849077 - 22849150
Alignment:
Q  505 atgttcccaagtttcgaggtaagttatttgaaaatgaagacctaaaacgacagaaaatcagagaaactgggccc 578  Q
    |||||| |||||||||||  |||||||||||| | ||||| |||||||||| |||||||||||||  |||||||    
T  22849077 atgttctcaagtttcgagacaagttatttgaagacgaagatctaaaacgacggaaaatcagagaagttgggccc 22849150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 505 - 578
Target Start/End: Original strand, 19577840 - 19577913
Alignment:
Q  505 atgttcccaagtttcgaggtaagttatttgaaaatgaagacctaaaacgacagaaaatcagagaaactgggccc 578  Q
    |||||||| |||| ||||| |||||||||||| | |||||||||||||||  ||||||| |||||  |||||||    
T  19577840 atgttccctagttccgaggcaagttatttgaagacgaagacctaaaacgatggaaaatcggagaatttgggccc 19577913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 505 - 580
Target Start/End: Complemental strand, 1636427 - 1636352
Alignment:
Q  505 atgttcccaagtttcgaggtaagttatttgaaaatgaagacctaaaacgacagaaaatcagagaaactgggcccgg 580  Q
    ||||||||| |||  |||| |||||||||||| | ||||||| ||||||||| |||||  |||||| |||||||||    
T  1636427 atgttcccatgttatgaggcaagttatttgaagacgaagaccaaaaacgacaaaaaattggagaaaatgggcccgg 1636352  T

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Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 506 - 568
Target Start/End: Complemental strand, 9519524 - 9519461
Alignment:
Q  506 tgttcccaagtttc-gaggtaagttatttgaaaatgaagacctaaaacgacagaaaatcagaga 568  Q
    ||||||||| |||| |||| |||||||||||| | ||||||| |||||||||||||||| ||||    
T  9519524 tgttcccaaatttccgaggcaagttatttgaagacgaagaccgaaaacgacagaaaatcggaga 9519461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 46 - 105
Target Start/End: Original strand, 11114394 - 11114453
Alignment:
Q  46 agttttgttatcatgtccatatgaatttaaaagtgataaaatgccataggaagttttgat 105  Q
    ||||||||| | |||| |||||| ||||||| ||||| ||||| ||||||||||||||||    
T  11114394 agttttgttgttatgttcatatggatttaaaggtgatgaaatgtcataggaagttttgat 11114453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 519 - 568
Target Start/End: Original strand, 20004495 - 20004545
Alignment:
Q  519 cgaggtaagttatttgaaaatgaagacct-aaaacgacagaaaatcagaga 568  Q
    |||||||||||||||||| | |||||||| |||||||||||||||| ||||    
T  20004495 cgaggtaagttatttgaagacgaagacctcaaaacgacagaaaatcggaga 20004545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 505 - 578
Target Start/End: Complemental strand, 14639084 - 14639011
Alignment:
Q  505 atgttcccaagtttcgaggtaagttatttgaaaatgaagacctaaaacgacagaaaatcagagaaactgggccc 578  Q
    ||||||||||||| | ||| | |||||||||| | |||||||||||||||  ||||||| |||||  |||||||    
T  14639084 atgttcccaagttccaaggaaggttatttgaagacgaagacctaaaacgatggaaaatcggagaatttgggccc 14639011  T

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Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 505 - 554
Target Start/End: Original strand, 19594281 - 19594330
Alignment:
Q  505 atgttcccaagtttcgaggtaagttatttgaaaatgaagacctaaaacga 554  Q
    |||||||| |||| ||||| |||||||||||| | |||||||||||||||    
T  19594281 atgttccctagttccgaggcaagttatttgaagacgaagacctaaaacga 19594330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 60; Significance: 3e-25; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 621 - 712
Target Start/End: Complemental strand, 7583665 - 7583574
Alignment:
Q  621 catgcgccttgggcatcttaaaaaatgcactagatgcgccttgggcattttaaatgtcgagggtgcaggcgtaattttgtgcgtttttgtgg 712  Q
    ||||| ||| |||||||||||||||| ||||||||| |||||||||||||||||||||||||| ||||| ||||| ||||| ||||||||||    
T  7583665 catgcacctggggcatcttaaaaaatacactagatgtgccttgggcattttaaatgtcgagggcgcaggtgtaatcttgtgtgtttttgtgg 7583574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 505 - 578
Target Start/End: Complemental strand, 11782272 - 11782199
Alignment:
Q  505 atgttcccaagtttcgaggtaagttatttgaaaatgaagacctaaaacgacagaaaatcagagaaactgggccc 578  Q
    ||||||||||||| ||||||| |||||||||| |  |||||||||||| ||  |||||| ||||||||||||||    
T  11782272 atgttcccaagttccgaggtaggttatttgaagagaaagacctaaaacaacgaaaaatctgagaaactgggccc 11782199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 505 - 561
Target Start/End: Original strand, 8968376 - 8968432
Alignment:
Q  505 atgttcccaagtttcgaggtaagttatttgaaaatgaagacctaaaacgacagaaaa 561  Q
    ||||||||||||| ||||| ||||||||| || |||||||||||||| ||| |||||    
T  8968376 atgttcccaagttccgaggaaagttatttaaatatgaagacctaaaatgacggaaaa 8968432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 506 - 574
Target Start/End: Original strand, 17335661 - 17335729
Alignment:
Q  506 tgttcccaagtttcgaggtaagttatttgaaaatgaagacctaaaacgacagaaaatcagagaaactgg 574  Q
    |||||||| ||| ||||| |||||||||||| | ||| ||||||||||||  ||||| |||||||||||    
T  17335661 tgttcccatgttccgaggcaagttatttgaagacgaaaacctaaaacgacgaaaaattagagaaactgg 17335729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 525 - 579
Target Start/End: Complemental strand, 10106067 - 10106013
Alignment:
Q  525 aagttatttgaaaatgaagacctaaaacgacagaaaatcagagaaactgggcccg 579  Q
    |||||||||||| |  || ||||||||| || |||||||||||||||||||||||    
T  10106067 aagttatttgaagagaaacacctaaaactacggaaaatcagagaaactgggcccg 10106013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 505 - 554
Target Start/End: Complemental strand, 17108511 - 17108462
Alignment:
Q  505 atgttcccaagtttcgaggtaagttatttgaaaatgaagacctaaaacga 554  Q
    ||||||||||||| ||||| || ||||||||| | |||||||||||||||    
T  17108511 atgttcccaagttccgaggcaatttatttgaagacgaagacctaaaacga 17108462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 54; Significance: 1e-21; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 654 - 731
Target Start/End: Original strand, 23868301 - 23868378
Alignment:
Q  654 atgcgccttgggcattttaaatgtcgagggtgcaggcgtaattttgtgcgtttttgtgggtaaagtctgcgtttttag 731  Q
    |||| ||||||||||||||||||||||| | ||||| |||||||||||||||||||||||||||| | ||||||||||    
T  23868301 atgcaccttgggcattttaaatgtcgagagcgcaggagtaattttgtgcgtttttgtgggtaaagcccgcgtttttag 23868378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 506 - 572
Target Start/End: Complemental strand, 21230717 - 21230651
Alignment:
Q  506 tgttcccaagtttcgaggtaagttatttgaaaatgaagacctaaaacgacagaaaatcagagaaact 572  Q
    ||||||||| |||||||  |||||||||||| | |||||||||||| ||| |||||||||| |||||    
T  21230717 tgttcccaaatttcgagacaagttatttgaagacgaagacctaaaatgacggaaaatcagaaaaact 21230651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 505 - 555
Target Start/End: Original strand, 24520304 - 24520354
Alignment:
Q  505 atgttcccaagtttcgaggtaagttatttgaaaatgaagacctaaaacgac 555  Q
    ||||||||||||| |||||| ||||||||||| | ||||||||||||||||    
T  24520304 atgttcccaagttccgaggttagttatttgaagacgaagacctaaaacgac 24520354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 508 - 580
Target Start/End: Original strand, 23882173 - 23882245
Alignment:
Q  508 ttcccaagtttcgaggtaagttatttgaaaatgaagacctaaaacgacagaaaatcagagaaactgggcccgg 580  Q
    ||||||||||  |||| |||||||||||| | |||||||||||||||| ||||||  | ||||||||| ||||    
T  23882173 ttcccaagttctgaggcaagttatttgaagacgaagacctaaaacgacggaaaattggggaaactggggccgg 23882245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 505 - 579
Target Start/End: Original strand, 13313552 - 13313626
Alignment:
Q  505 atgttcccaagtttcgaggtaagttatttgaaaatgaagacct-aaaacgacagaaaatcagagaaactgggcccg 579  Q
    |||||||||||||| |||| |||||||||||| |  ||||||| | || ||| |||||||||||||||||||||||    
T  13313552 atgttcccaagttttgaggcaagttatttgaagacaaagacctgagaatgac-gaaaatcagagaaactgggcccg 13313626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 680 - 731
Target Start/End: Original strand, 13313786 - 13313837
Alignment:
Q  680 agggtgcaggcgtaattttgtgcgtttttgtgggtaaagtctgcgtttttag 731  Q
    ||||||||| ||||||||| ||| ||||||||||||||| | ||||||||||    
T  13313786 agggtgcagacgtaattttatgcatttttgtgggtaaagcccgcgtttttag 13313837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 506 - 596
Target Start/End: Original strand, 15176737 - 15176827
Alignment:
Q  506 tgttcccaagtttcgaggtaagttatttgaaaatgaagacct-aaaacgacagaaaatcagagaaactgggcccggaaacacataagcatgc 596  Q
    |||||||||||| ||||| |||||||||||| | |||||||| |||||||  ||| |||||||||| |||||| | || |||| ||||||||    
T  15176737 tgttcccaagttccgaggcaagttatttgaagacgaagacctaaaaacga-tgaagatcagagaaattgggcctgaaagcacacaagcatgc 15176827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 506 - 569
Target Start/End: Original strand, 24109339 - 24109402
Alignment:
Q  506 tgttcccaagtttcgaggtaagttatttgaaaatgaagacctaaaacgacagaaaatcagagaa 569  Q
    ||||||| |||| | ||| |||||||||||| | ||||||||||||| || |||||||||||||    
T  24109339 tgttccctagttccaaggcaagttatttgaagacgaagacctaaaacaacggaaaatcagagaa 24109402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 510 - 563
Target Start/End: Original strand, 29765702 - 29765755
Alignment:
Q  510 cccaagtttcgaggtaagttatttgaaaatgaagacctaaaacgacagaaaatc 563  Q
    |||||||| ||| | |||||||||||||| ||||| |||||||||| |||||||    
T  29765702 cccaagttccgatgcaagttatttgaaaacgaagaactaaaacgacggaaaatc 29765755  T

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Target: chr7 (Bit Score: 52; Significance: 2e-20; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 618 - 712
Target Start/End: Original strand, 8977734 - 8977829
Alignment:
Q  618 tgccatgcgccttgggcatcttaaaaaa-tgcactagatgcgccttgggcattttaaatgtcgagggtgcaggcgtaattttgtgcgtttttgtgg 712  Q
    |||||||| ||| ||||||||||||||| | ||||||||| || ||||||||||||||||||||||| ||| | ||||||||||| ||||||||||    
T  8977734 tgccatgcacctggggcatcttaaaaaaatacactagatgtgcattgggcattttaaatgtcgagggcgcatgtgtaattttgtgtgtttttgtgg 8977829  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 505 - 574
Target Start/End: Complemental strand, 3173049 - 3172980
Alignment:
Q  505 atgttcccaagtttcgaggtaagttatttgaaaatgaagacctaaaacgacagaaaatcagagaaactgg 574  Q
    ||||| |||||||||||||||| ||| ||||| | ||||| |||||||||| ||||||| ||||||||||    
T  3173049 atgtttccaagtttcgaggtaaattagttgaagacgaagaactaaaacgacggaaaatcggagaaactgg 3172980  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 506 - 569
Target Start/End: Original strand, 17189819 - 17189882
Alignment:
Q  506 tgttcccaagtttcgaggtaagttatttgaaaatgaagacctaaaacgacagaaaatcagagaa 569  Q
    |||||||||||   |||| |||||||||||| | |||||| ||||||||||||||||| |||||    
T  17189819 tgttcccaagtcctgaggcaagttatttgaagacgaagacttaaaacgacagaaaatcggagaa 17189882  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 681 - 731
Target Start/End: Complemental strand, 17078357 - 17078307
Alignment:
Q  681 gggtgcaggcgtaattttgtgcgtttttgtgggtaaagtctgcgtttttag 731  Q
    |||||||||||||||||| | ||||||||||||||| | | ||||||||||    
T  17078357 gggtgcaggcgtaattttattcgtttttgtgggtaatgcccgcgtttttag 17078307  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 506 - 555
Target Start/End: Complemental strand, 11804490 - 11804441
Alignment:
Q  506 tgttcccaagtttcgaggtaagttatttgaaaatgaagacctaaaacgac 555  Q
    |||| |||||||  |||| |||||||||||| ||||||||||||||||||    
T  11804490 tgtttccaagttctgaggcaagttatttgaagatgaagacctaaaacgac 11804441  T

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Target: chr5 (Bit Score: 45; Significance: 3e-16; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 505 - 577
Target Start/End: Original strand, 15199205 - 15199277
Alignment:
Q  505 atgttcccaagtttcgaggtaagttatttgaaaatgaagacctaaaacgacagaaaatcagagaaactgggcc 577  Q
    ||||||||||||| ||||  |||||||||||| |||||||||||||||||| | |||||||||||| ||||||    
T  15199205 atgttcccaagttccgagacaagttatttgaagatgaagacctaaaacgacggtaaatcagagaaagtgggcc 15199277  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 506 - 578
Target Start/End: Original strand, 19007131 - 19007203
Alignment:
Q  506 tgttcccaagtttcgaggtaagttatttgaaaatgaagacctaaaacgacagaaaatcagagaaactgggccc 578  Q
    |||||||||||   ||||||||||||||||| | |||||| ||||||||||||||||| |||||  |||||||    
T  19007131 tgttcccaagtcctgaggtaagttatttgaagacgaagacttaaaacgacagaaaatcggagaatttgggccc 19007203  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 519 - 578
Target Start/End: Original strand, 20548769 - 20548828
Alignment:
Q  519 cgaggtaagttatttgaaaatgaagacctaaaacgacagaaaatcagagaaactgggccc 578  Q
    ||||| |||||||||||| |||||||  ||||||||||||||||| |||||  |||||||    
T  20548769 cgaggaaagttatttgaagatgaagatttaaaacgacagaaaatcggagaatttgggccc 20548828  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 513 - 562
Target Start/End: Original strand, 23215140 - 23215189
Alignment:
Q  513 aagtttcgaggtaagttatttgaaaatgaagacctaaaacgacagaaaat 562  Q
    ||||| ||||| |||||||||||| | |||||||||||||||| ||||||    
T  23215140 aagttccgaggaaagttatttgaagacgaagacctaaaacgacggaaaat 23215189  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 505 - 578
Target Start/End: Complemental strand, 29987748 - 29987675
Alignment:
Q  505 atgttcccaagtttcgaggtaagttatttgaaaatgaagacctaaaacgacagaaaatcagagaaactgggccc 578  Q
    ||||||| ||||| ||||| |||||||||||| | |||||||||||| ||| | ||||| ||||| ||| ||||    
T  29987748 atgttcctaagttccgaggcaagttatttgaagacgaagacctaaaaagacgggaaatcggagaacctgtgccc 29987675  T

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Target: scaffold0056 (Bit Score: 38; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0056
Description:

Target: scaffold0056; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 505 - 578
Target Start/End: Complemental strand, 22829 - 22756
Alignment:
Q  505 atgttcccaagtttcgaggtaagttatttgaaaatgaagacctaaaacgacagaaaatcagagaaactgggccc 578  Q
    ||||||||||||  ||||| |||||||||||| |||||||||||||||||  ||||||| |||||  |||||||    
T  22829 atgttcccaagtcccgagggaagttatttgaagatgaagacctaaaacgatggaaaatcggagaatttgggccc 22756  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000005; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 506 - 551
Target Start/End: Complemental strand, 18747613 - 18747568
Alignment:
Q  506 tgttcccaagtttcgaggtaagttatttgaaaatgaagacctaaaa 551  Q
    ||||||||||||||||||||||||||||||| | ||||||||||||    
T  18747613 tgttcccaagtttcgaggtaagttatttgaagacgaagacctaaaa 18747568  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 506 - 576
Target Start/End: Original strand, 2166341 - 2166411
Alignment:
Q  506 tgttcccaagtttcgaggtaagttatttgaaaatgaagacctaaaacgacagaaaatcagagaaactgggc 576  Q
    |||||||||||| ||||| |||||||||||| |||||| ||||||  ||| ||||||  ||||||||||||    
T  2166341 tgttcccaagttccgaggcaagttatttgaagatgaagtcctaaattgacggaaaattggagaaactgggc 2166411  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 505 - 578
Target Start/End: Original strand, 18457414 - 18457487
Alignment:
Q  505 atgttcccaagtttcgaggtaagttatttgaaaatgaagacctaaaacgacagaaaatcagagaaactgggccc 578  Q
    |||||||||||||  |||  |||||||||||| | |||||||||||||||| ||||||| |||||  |||||||    
T  18457414 atgttcccaagttctgagtcaagttatttgaagacgaagacctaaaacgacggaaaatcggagaatttgggccc 18457487  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 506 - 578
Target Start/End: Original strand, 12771507 - 12771579
Alignment:
Q  506 tgttcccaagtttcgaggtaagttatttgaaaatgaagacctaaaacgacagaaaatcagagaaactgggccc 578  Q
    |||||| ||||| | ||| ||||||| |||| | |||||||||||||||| ||||| | ||||||||||||||    
T  12771507 tgttcctaagttccaaggcaagttatctgaagacgaagacctaaaacgacggaaaagcggagaaactgggccc 12771579  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 505 - 575
Target Start/End: Complemental strand, 8145040 - 8144970
Alignment:
Q  505 atgttcccaagtttcgaggtaagttatttgaaaatgaagacct-aaaacgacagaaaatcagagaaactggg 575  Q
    ||||||| ||||| ||||| |||||||||||| | |||||||| ||||||||| |||||| |||||||||||    
T  8145040 atgttcctaagttccgaggcaagttatttgaagacgaagacctaaaaacgaca-aaaatcggagaaactggg 8144970  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 520 - 568
Target Start/End: Complemental strand, 19169834 - 19169785
Alignment:
Q  520 gaggtaagttatttgaaaatgaagacctaaaa-cgacagaaaatcagaga 568  Q
    |||| |||||||||||| | |||||||||||| |||||||||||||||||    
T  19169834 gaggcaagttatttgaagacgaagacctaaaaacgacagaaaatcagaga 19169785  T

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Target: scaffold0451 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0451
Description:

Target: scaffold0451; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 505 - 569
Target Start/End: Complemental strand, 5523 - 5459
Alignment:
Q  505 atgttcccaagtttcgaggtaagttatttgaaaatgaagacctaaaacgacagaaaatcagagaa 569  Q
    ||||||||||||||| |||||||||||||||| | |||||||||||| ||| ||| ||| |||||    
T  5523 atgttcccaagtttcaaggtaagttatttgaacacgaagacctaaaatgacggaagatcggagaa 5459  T

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Target: chr2 (Bit Score: 37; Significance: 0.00000000002; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 507 - 563
Target Start/End: Complemental strand, 17350779 - 17350723
Alignment:
Q  507 gttcccaagtttcgaggtaagttatttgaaaatgaagacctaaaacgacagaaaatc 563  Q
    ||||||||||| ||||| |||||||||||| | ||||||||||||||| ||||||||    
T  17350779 gttcccaagttccgaggcaagttatttgaagacgaagacctaaaacgatagaaaatc 17350723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 519 - 581
Target Start/End: Original strand, 25886510 - 25886572
Alignment:
Q  519 cgaggtaagttatttgaaaatgaagacctaaaacgacagaaaatcagagaaactgggcccgga 581  Q
    ||||| |||||||||||| | ||| ||||||||| || ||||||| |||||||||||||||||    
T  25886510 cgaggcaagttatttgaagaggaacacctaaaacaacggaaaatcggagaaactgggcccgga 25886572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 662 - 709
Target Start/End: Original strand, 27540676 - 27540723
Alignment:
Q  662 tgggcattttaaatgtcgagggtgcaggcgtaattttgtgcgtttttg 709  Q
    |||||||||||||||||||||| ||||| || ||||| ||||||||||    
T  27540676 tgggcattttaaatgtcgagggcgcaggtgttattttatgcgtttttg 27540723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 506 - 572
Target Start/End: Complemental strand, 22568854 - 22568788
Alignment:
Q  506 tgttcccaagtttcgaggtaagttatttgaaaatgaagacctaaaacgacagaaaatcagagaaact 572  Q
    ||||||||||||  ||||||||||||||||| |  || |||||||| ||||||| || |||||||||    
T  22568854 tgttcccaagttctgaggtaagttatttgaagacaaaaacctaaaatgacagaatattagagaaact 22568788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 511 - 600
Target Start/End: Complemental strand, 29144420 - 29144331
Alignment:
Q  511 ccaagtttcgaggtaagttatttgaaaatgaagacctaaaa-cgacagaaaatcagagaaactgggcccggaaacacataagcatgcgcct 600  Q
    |||||||  |||| |||||||||||| | |||||||||||| |||| |||  | ||||||| ||||||| ||| |||||||||||||||||    
T  29144420 ccaagttctgaggcaagttatttgaagacgaagacctaaaaacgac-gaagttaagagaaattgggcccagaatcacataagcatgcgcct 29144331  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 506 - 578
Target Start/End: Original strand, 17674295 - 17674367
Alignment:
Q  506 tgttcccaagtttcgaggtaagttatttgaaaatgaagacct-aaaacgacagaaaatcagagaaactgggccc 578  Q
    ||||||||||||| |||| |||| ||||||| |  ||||||| ||||||||| ||||||||||||| |||||||    
T  17674295 tgttcccaagttttgaggcaagtcatttgaagaaaaagacctaaaaacgaca-aaaatcagagaaattgggccc 17674367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000007; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 505 - 575
Target Start/End: Original strand, 15542087 - 15542157
Alignment:
Q  505 atgttcccaagtttcgaggtaagttatttgaaaatgaagacctaaa-acgacagaaaatcagagaaactggg 575  Q
    ||||||||||||| ||||| |||||||||||| | ||||||||||| ||||| ||||||| |||||||||||    
T  15542087 atgttcccaagttccgaggaaagttatttgaagacgaagacctaaacacgac-gaaaatcggagaaactggg 15542157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 520 - 578
Target Start/End: Original strand, 16817426 - 16817484
Alignment:
Q  520 gaggtaagttatttgaaaatgaagacctaaaacgacagaaaatcagagaaactgggccc 578  Q
    |||| |||||||||||| |||||||| ||||||||||| ||||| |||||  |||||||    
T  16817426 gaggcaagttatttgaagatgaagacttaaaacgacaggaaatcggagaatttgggccc 16817484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 506 - 551
Target Start/End: Original strand, 21333373 - 21333418
Alignment:
Q  506 tgttcccaagtttcgaggtaagttatttgaaaatgaagacctaaaa 551  Q
    |||||||||||| ||||| |||||||||||| | ||||||||||||    
T  21333373 tgttcccaagttccgaggcaagttatttgaagacgaagacctaaaa 21333418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 519 - 568
Target Start/End: Complemental strand, 27546169 - 27546120
Alignment:
Q  519 cgaggtaagttatttgaaaatgaagacctaaaacgacagaaaatcagaga 568  Q
    ||||| || ||||||||| | |||||||||||||||||||||||| ||||    
T  27546169 cgaggcaaattatttgaagacgaagacctaaaacgacagaaaatcggaga 27546120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0111 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0111
Description:

Target: scaffold0111; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 506 - 575
Target Start/End: Complemental strand, 21268 - 21199
Alignment:
Q  506 tgttcccaagtttcgaggtaagttatttgaaaatgaagacctaaaacgacagaaaatcagagaaactggg 575  Q
    ||||||||||||  |||| |||||||||||| | ||||||||||||  |  ||||||| |||||||||||    
T  21268 tgttcccaagttctgaggcaagttatttgaagacgaagacctaaaaacaacgaaaatcggagaaactggg 21199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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