View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2671_low_4 (Length: 653)
Name: NF2671_low_4
Description: NF2671
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2671_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 349; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 35 - 434
Target Start/End: Original strand, 39511614 - 39512014
Alignment:
| Q |
35 |
ccaaatatgaaaggtaaataaagggacattacattaaataacatttttcctctttcaaaaacaaa-aattaaataacatttttccgtaccctaatagatt |
133 |
Q |
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| T |
39511614 |
ccaaatatgaaaggtaaataaagggacattacattaaataacatttttcctctttcaaaaaaaaataattaaataacatttttccgtacactaatagatt |
39511713 |
T |
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| Q |
134 |
tagcttctttatgcttagattcattccccttttccaatcacatatgtgtaaggtcacaatcatatcacagcatgcattcaataacatctgaaccgtttaa |
233 |
Q |
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| T |
39511714 |
tagcttctttatgcttagattcattccccttttccaatcacatatgtgtacggtcacaaccatatcactgcatgcattcaataacatctgaaccgtttaa |
39511813 |
T |
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| Q |
234 |
tcaatatctaatcataaaaaatttaaattcagtattcttaatttaaaatagccaaaatctggaccgttcaatatcaatggaacaacctagatataactaa |
333 |
Q |
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| T |
39511814 |
tcaatatctaatcataaaaaatttaaattcaatattcttaatttaaaatagccaaaatctggaccgttcaatatcaatggaacaacctagatataactaa |
39511913 |
T |
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| Q |
334 |
gtgcatgcaatcaatcactatcactacacacaatccaaataaaaacttacgctgataaacattgacatggacataaaaaaattatatgctttttattaaa |
433 |
Q |
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| T |
39511914 |
gtgcatgcaatcaatcactatcactacatacactccaaataaaaacttatgctgataaacattgacatggacataaaaatattatatgcttttttttaaa |
39512013 |
T |
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| Q |
434 |
c |
434 |
Q |
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| T |
39512014 |
c |
39512014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 525 - 638
Target Start/End: Original strand, 39512106 - 39512219
Alignment:
| Q |
525 |
gttccaagttttcattccctttcaagtaacccattagactcagttaccaacatcattggccaaacaatctctctcatcattttgttgggtcaaccttagt |
624 |
Q |
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| T |
39512106 |
gttccaagttttctttccctttaaagtaacccattagactcagttaccaacatcattggccaaacaatctctctcatcattttgttgggtcaaccttagt |
39512205 |
T |
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| Q |
625 |
tcattgtctcactt |
638 |
Q |
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|||||||||||||| |
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| T |
39512206 |
tcattgtctcactt |
39512219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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